More than 300 homologs were found in PanDaTox collection
for query gene RPC_3790 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007925  RPC_3790  two component LuxR family transcriptional regulator  100 
 
 		 226 aa  448  1e-125  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007778  RPB_4449  two component LuxR family transcriptional regulator  78.9 
 
 		 230 aa  348  5e-95  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  0.683214 
 
 
-
 
NC_011004  Rpal_1676  two component transcriptional regulator, LuxR family  75.57 
 
 		 228 aa  344  5e-94  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007958  RPD_2401  response regulator receiver  78.34 
 
 		 230 aa  341  4e-93  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0808908 
 
 
-
 
NC_007958  RPD_3789  response regulator receiver  74.66 
 
 		 228 aa  340  8e-93  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0916709 
 
 
-
 
NC_007778  RPB_4035  two component LuxR family transcriptional regulator  75.11 
 
 		 228 aa  340  1e-92  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_3423  two component transcriptional regulator, LuxR family  74.03 
 
 		 235 aa  334  5e-91  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.324081  n/a   
 
 
-
 
NC_009485  BBta_3079  two component LuxR family transcriptional regulator  58.74 
 
 		 233 aa  269  2e-71  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011666  Msil_2019  two component transcriptional regulator, LuxR family  60.18 
 
 		 223 aa  258  4e-68  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_010505  Mrad2831_3042  two component LuxR family transcriptional regulator  53.02 
 
 		 222 aa  229  2e-59  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.280021 
 
 
-
 
NC_010725  Mpop_3747  two component transcriptional regulator, LuxR family  53.49 
 
 		 221 aa  225  4e-58  Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_5717  two component LuxR family transcriptional regulator  48.15 
 
 		 220 aa  203  2e-51  Methylobacterium sp. 4-46  Bacteria  normal  0.873964  hitchhiker  0.00405289 
 
 
-
 
NC_007958  RPD_2393  response regulator receiver  67.86 
 
 		 172 aa  192  3e-48  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.820012  normal  0.124287 
 
 
-
 
NC_007778  RPB_4442  response regulator receiver domain-containing protein  68.15 
 
 		 172 aa  191  9e-48  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  0.591595 
 
 
-
 
NC_011830  Dhaf_1194  two component transcriptional regulator, LuxR family  43.52 
 
 		 217 aa  188  5e-47  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.272513  n/a   
 
 
-
 
NC_011894  Mnod_0855  two component transcriptional regulator, LuxR family  45.79 
 
 		 223 aa  187  9e-47  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.082304  n/a   
 
 
-
 
NC_011894  Mnod_0851  two component transcriptional regulator, LuxR family  41.74 
 
 		 232 aa  174  7e-43  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  40.38 
 
 		 218 aa  163  2.0000000000000002e-39  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  41.47 
 
 		 228 aa  163  2.0000000000000002e-39  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  39.91 
 
 		 218 aa  162  4.0000000000000004e-39  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009675  Anae109_1810  two component LuxR family transcriptional regulator  41.12 
 
 		 218 aa  162  4.0000000000000004e-39  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  39.91 
 
 		 218 aa  162  4.0000000000000004e-39  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_011830  Dhaf_1230  two component transcriptional regulator, LuxR family  38.03 
 
 		 215 aa  159  4e-38  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  38.39 
 
 		 224 aa  157  1e-37  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  37.96 
 
 		 213 aa  157  2e-37  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_011757  Mchl_1985  two component transcriptional regulator, LuxR family  39.35 
 
 		 222 aa  156  2e-37  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010172  Mext_1668  response regulator receiver  38.68 
 
 		 222 aa  156  3e-37  Methylobacterium extorquens PA1  Bacteria  normal  0.679138  normal  1 
 
 
-
 
NC_014148  Plim_3764  response regulator receiver  41.31 
 
 		 217 aa  155  4e-37  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.321181  n/a   
 
 
-
 
NC_010725  Mpop_4860  two component transcriptional regulator, LuxR family  38.84 
 
 		 236 aa  154  8e-37  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.142587 
 
 
-
 
NC_011831  Cagg_3668  two component transcriptional regulator, LuxR family  41.43 
 
 		 213 aa  154  1e-36  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_0347  two component transcriptional regulator, LuxR family  39.72 
 
 		 222 aa  152  2.9999999999999998e-36  Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011757  Mchl_4712  two component transcriptional regulator, LuxR family  37.44 
 
 		 236 aa  152  4e-36  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.37561  normal  1 
 
 
-
 
NC_010172  Mext_4343  response regulator receiver  37.44 
 
 		 236 aa  152  4e-36  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009483  Gura_2780  two component LuxR family transcriptional regulator  39.25 
 
 		 226 aa  151  5.9999999999999996e-36  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009439  Pmen_2375  two component LuxR family transcriptional regulator  38.6 
 
 		 214 aa  150  2e-35  Pseudomonas mendocina ymp  Bacteria  normal  0.405291  normal  0.0506876 
 
 
-
 
NC_011830  Dhaf_1205  two component transcriptional regulator, LuxR family  35.51 
 
 		 212 aa  150  2e-35  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_013739  Cwoe_1298  two component transcriptional regulator, LuxR family  36.57 
 
 		 228 aa  149  3e-35  Conexibacter woesei DSM 14684  Bacteria  normal  0.70055  normal  1 
 
 
-
 
NC_013552  DhcVS_601  DNA-binding response regulator, LuxR family  34.39 
 
 		 224 aa  148  5e-35  Dehalococcoides sp. VS  Bacteria  normal  1  n/a   
 
 
-
 
NC_002936  DET0663  LuxR family DNA-binding response regulator  33.94 
 
 		 224 aa  146  2.0000000000000003e-34  Dehalococcoides ethenogenes 195  Bacteria  normal  1  n/a   
 
 
-
 
NC_002936  DET0697  LuxR family DNA-binding response regulator  33.94 
 
 		 224 aa  146  2.0000000000000003e-34  Dehalococcoides ethenogenes 195  Bacteria  normal  1  n/a   
 
 
-
 
NC_009455  DehaBAV1_0632  two component LuxR family transcriptional regulator  33.94 
 
 		 224 aa  147  2.0000000000000003e-34  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00385785  n/a   
 
 
-
 
NC_002947  PP_4099  DNA-binding response regulator GacA  36.74 
 
 		 212 aa  145  5e-34  Pseudomonas putida KT2440  Bacteria  normal  0.427607  normal  0.0594882 
 
 
-
 
NC_009512  Pput_1765  two component LuxR family transcriptional regulator  36.74 
 
 		 212 aa  145  5e-34  Pseudomonas putida F1  Bacteria  normal  0.456405  hitchhiker  0.00257365 
 
 
-
 
NC_011071  Smal_1526  two component transcriptional regulator, LuxR family  39.53 
 
 		 215 aa  145  6e-34  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.88337  normal  1 
 
 
-
 
NC_007974  Rmet_4715  Two component LuxR family transcriptional regulator  34.76 
 
 		 264 aa  144  7.0000000000000006e-34  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009656  PSPA7_2613  response regulator GacA  36.11 
 
 		 214 aa  144  8.000000000000001e-34  Pseudomonas aeruginosa PA7  Bacteria  normal  0.466832  n/a   
 
 
-
 
NC_008463  PA14_30650  response regulator GacA  36.11 
 
 		 214 aa  144  8.000000000000001e-34  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  hitchhiker  0.00700013 
 
 
-
 
NC_008781  Pnap_0790  two component LuxR family transcriptional regulator  37.44 
 
 		 214 aa  144  9e-34  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.870503  normal  0.997505 
 
 
-
 
NC_009654  Mmwyl1_0679  two component LuxR family transcriptional regulator  34.6 
 
 		 213 aa  144  1e-33  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007947  Mfla_0815  two component LuxR family transcriptional regulator  37.09 
 
 		 213 aa  144  1e-33  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.00000180305  normal  1 
 
 
-
 
NC_009943  Dole_0029  two component LuxR family transcriptional regulator  38.1 
 
 		 214 aa  143  2e-33  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.317943  n/a   
 
 
-
 
NC_007974  Rmet_4516  two component LuxR family transcriptional regulator  40.95 
 
 		 214 aa  143  2e-33  Cupriavidus metallidurans CH34  Bacteria  normal  0.0463384  normal  0.0270495 
 
 
-
 
NC_002939  GSU0682  LuxR family DNA-binding response regulator  38.86 
 
 		 215 aa  142  3e-33  Geobacter sulfurreducens PCA  Bacteria  normal  0.874366  n/a   
 
 
-
 
NC_007614  Nmul_A1235  two component LuxR family transcriptional regulator  38.05 
 
 		 211 aa  143  3e-33  Nitrosospira multiformis ATCC 25196  Bacteria  normal  1  n/a   
 
 
-
 
NC_010718  Nther_0648  two component transcriptional regulator, LuxR family  38.46 
 
 		 215 aa  142  3e-33  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007947  Mfla_1714  two component LuxR family transcriptional regulator  35.35 
 
 		 213 aa  142  3e-33  Methylobacillus flagellatus KT  Bacteria  normal  0.975164  hitchhiker  0.000785935 
 
 
-
 
NC_010506  Swoo_3747  two component LuxR family transcriptional regulator  35.24 
 
 		 206 aa  142  4e-33  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010552  BamMC406_4248  two component LuxR family transcriptional regulator  36.07 
 
 		 215 aa  142  5e-33  Burkholderia ambifaria MC40-6  Bacteria  normal  0.206342  normal  1 
 
 
-
 
NC_009675  Anae109_1385  two component LuxR family transcriptional regulator  36.74 
 
 		 212 aa  142  5e-33  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008391  Bamb_3774  two component LuxR family transcriptional regulator  36.07 
 
 		 215 aa  142  5e-33  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  0.329832 
 
 
-
 
NC_002939  GSU1293  LuxR family DNA-binding response regulator  35.78 
 
 		 216 aa  142  6e-33  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_010086  Bmul_4256  two component LuxR family transcriptional regulator  36.53 
 
 		 215 aa  142  6e-33  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.282152  normal  1 
 
 
-
 
NC_009455  DehaBAV1_0945  two component LuxR family transcriptional regulator  37.74 
 
 		 232 aa  141  7e-33  Dehalococcoides sp. BAV1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013739  Cwoe_4976  two component transcriptional regulator, LuxR family  40 
 
 		 218 aa  141  8e-33  Conexibacter woesei DSM 14684  Bacteria  normal  0.289575  normal  0.034027 
 
 
-
 
NC_010501  PputW619_3375  two component LuxR family transcriptional regulator  35.81 
 
 		 212 aa  141  8e-33  Pseudomonas putida W619  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007511  Bcep18194_B1652  two component LuxR family transcriptional regulator  36.07 
 
 		 215 aa  141  9e-33  Burkholderia sp. 383  Bacteria  normal  0.187578  normal  0.308689 
 
 
-
 
NC_007005  Psyr_2897  LuxR response regulator receiver  36.57 
 
 		 222 aa  140  9.999999999999999e-33  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.017691  normal  0.317002 
 
 
-
 
NC_013501  Rmar_1122  two component transcriptional regulator, LuxR family  35.16 
 
 		 234 aa  140  9.999999999999999e-33  Rhodothermus marinus DSM 4252  Bacteria  normal  0.752968  n/a   
 
 
-
 
NC_002936  DET1063  LuxR family DNA-binding response regulator  37.38 
 
 		 232 aa  140  1.9999999999999998e-32  Dehalococcoides ethenogenes 195  Bacteria  normal  0.815436  n/a   
 
 
-
 
NC_002976  SERP1981  transcriptional regulatory protein DegU, putative  37.16 
 
 		 218 aa  140  1.9999999999999998e-32  Staphylococcus epidermidis RP62A  Bacteria  normal  1  n/a   
 
 
-
 
NC_003295  RSc2312  two-component response regulator transcription regulator protein  35.55 
 
 		 238 aa  140  1.9999999999999998e-32  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  0.500036 
 
 
-
 
NC_011312  VSAL_I2141  response regulator  33.49 
 
 		 214 aa  140  1.9999999999999998e-32  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.126922  n/a   
 
 
-
 
NC_010515  Bcenmc03_5989  two component LuxR family transcriptional regulator  36.07 
 
 		 215 aa  140  1.9999999999999998e-32  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007951  Bxe_A1850  two component LuxR family transcriptional regulator  37.32 
 
 		 216 aa  140  1.9999999999999998e-32  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013204  Elen_1743  two component transcriptional regulator, LuxR family  35.98 
 
 		 214 aa  140  1.9999999999999998e-32  Eggerthella lenta DSM 2243  Bacteria  normal  0.370009  normal  0.039988 
 
 
-
 
NC_008543  Bcen2424_4365  two component LuxR family transcriptional regulator  36.07 
 
 		 215 aa  140  1.9999999999999998e-32  Burkholderia cenocepacia HI2424  Bacteria  normal  0.902614  normal  1 
 
 
-
 
NC_008576  Mmc1_2093  two component LuxR family transcriptional regulator  36.11 
 
 		 206 aa  140  1.9999999999999998e-32  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000328625  normal  0.180863 
 
 
-
 
NC_007435  BURPS1710b_A0127  LuxR family DNA-binding response regulator  35.62 
 
 		 215 aa  139  3e-32  Burkholderia pseudomallei 1710b  Bacteria  normal  0.914848  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1551  LuxR family DNA-binding response regulator  35.62 
 
 		 215 aa  139  3e-32  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_008061  Bcen_4002  two component LuxR family transcriptional regulator  36.07 
 
 		 215 aa  139  3e-32  Burkholderia cenocepacia AU 1054  Bacteria  normal  1  n/a   
 
 
-
 
NC_008345  Sfri_2649  response regulator  33.18 
 
 		 214 aa  139  3e-32  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_013552  DhcVS_934  DNA-binding response regulator, LuxR family  36.92 
 
 		 232 aa  139  3e-32  Dehalococcoides sp. VS  Bacteria  normal  0.717523  n/a   
 
 
-
 
NC_009075  BURPS668_A1634  LuxR family DNA-binding response regulator  35.62 
 
 		 215 aa  139  3e-32  Burkholderia pseudomallei 668  Bacteria  normal  1  n/a   
 
 
-
 
NC_004310  BR0342  LuxR family DNA-binding response regulator  35.38 
 
 		 213 aa  139  3.9999999999999997e-32  Brucella suis 1330  Bacteria  normal  0.0601944  n/a   
 
 
-
 
NC_009505  BOV_0358  LuxR family DNA-binding response regulator  35.38 
 
 		 213 aa  139  3.9999999999999997e-32  Brucella ovis ATCC 25840  Bacteria  normal  0.363  n/a   
 
 
-
 
NC_008228  Patl_2290  two component LuxR family transcriptional regulator  35.14 
 
 		 215 aa  139  3.9999999999999997e-32  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_009665  Shew185_2600  response regulator  33.94 
 
 		 214 aa  139  4.999999999999999e-32  Shewanella baltica OS185  Bacteria  hitchhiker  0.000388579  n/a   
 
 
-
 
NC_009632  SaurJH1_2463  response regulator receiver  36.11 
 
 		 217 aa  139  4.999999999999999e-32  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  1  n/a   
 
 
-
 
NC_003910  CPS_1406  DNA-binding response regulator  35.58 
 
 		 215 aa  139  4.999999999999999e-32  Colwellia psychrerythraea 34H  Bacteria  normal  0.253896  n/a   
 
 
-
 
NC_011663  Sbal223_1782  response regulator  33.94 
 
 		 214 aa  139  4.999999999999999e-32  Shewanella baltica OS223  Bacteria  normal  0.0381154  hitchhiker  0.0000000750596 
 
 
-
 
NC_010571  Oter_0829  two component LuxR family transcriptional regulator  36.07 
 
 		 219 aa  139  4.999999999999999e-32  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.0121621 
 
 
-
 
NC_009487  SaurJH9_2415  two component LuxR family transcriptional regulator  36.11 
 
 		 217 aa  139  4.999999999999999e-32  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  1  n/a   
 
 
-
 
NC_009052  Sbal_2562  response regulator  33.94 
 
 		 214 aa  139  4.999999999999999e-32  Shewanella baltica OS155  Bacteria  normal  0.0171044  n/a   
 
 
-
 
NC_007650  BTH_II1247  LuxR family DNA-binding response regulator  35.16 
 
 		 215 aa  139  4.999999999999999e-32  Burkholderia thailandensis E264  Bacteria  normal  0.32702  n/a   
 
 
-
 
NC_009997  Sbal195_2677  response regulator  33.94 
 
 		 214 aa  139  4.999999999999999e-32  Shewanella baltica OS195  Bacteria  normal  0.0738952  normal  0.957867 
 
 
-
 
NC_011146  Gbem_0451  two component transcriptional regulator, LuxR family  38.32 
 
 		 216 aa  139  4.999999999999999e-32  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_007644  Moth_0023  two component LuxR family transcriptional regulator  37.5 
 
 		 221 aa  138  7e-32  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.273145  hitchhiker  0.00000136124 
 
 
-
 
NC_007954  Sden_1436  response regulator  33.18 
 
 		 214 aa  138  7e-32  Shewanella denitrificans OS217  Bacteria  normal  0.794512  n/a   
 
 
-
 
NC_012918  GM21_0467  two component transcriptional regulator, LuxR family  38.32 
 
 		 216 aa  138  7e-32  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000507383 
 
 
-
 
NC_008577  Shewana3_1608  response regulator  33.94 
 
 		 214 aa  138  7.999999999999999e-32  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000660452  normal  0.150334 
 
 
-
 
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