12 homologs were found in PanDaTox collection
for query gene RPC_1237 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007925  RPC_1237    100 
 
 
225 bp  446  1e-123  Rhodopseudomonas palustris BisB18  Bacteria  hitchhiker  0.000103856  unclonable  1.63408e-08 
 
 
-
 
NC_007778  RPB_4035  two component LuxR family transcriptional regulator  91.43 
 
 
687 bp  228  5e-58  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3789  response regulator receiver  90.86 
 
 
687 bp  220  1e-55  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0916709 
 
 
-
 
NC_011004  Rpal_1676  two component transcriptional regulator, LuxR family  87.86 
 
 
687 bp  176  2e-42  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4449  two component LuxR family transcriptional regulator  84.03 
 
 
693 bp  87.7  1e-15  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.683214 
 
 
-
 
NC_011004  Rpal_3423  two component transcriptional regulator, LuxR family  84.35 
 
 
708 bp  85.7  5e-15  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.324081  n/a   
 
 
-
 
NC_009485  BBta_3079  two component LuxR family transcriptional regulator  91.53 
 
 
702 bp  77.8  1e-12  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3790  two component LuxR family transcriptional regulator  81.48 
 
 
681 bp  56  4e-06  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_2401  response regulator receiver  81.31 
 
 
693 bp  54  2e-05  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0808908 
 
 
-
 
NC_010511  M446_5717  two component LuxR family transcriptional regulator  96.55 
 
 
663 bp  50.1  0.0003  Methylobacterium sp. 4-46  Bacteria  normal  0.873964  hitchhiker  0.00405289 
 
 
-
 
NC_008825  Mpe_A3621  response regulatory protein  93.55 
 
 
732 bp  46.1  0.004  Methylibium petroleiphilum PM1  Bacteria  normal  0.0192509  normal  0.145723 
 
 
-
 
NC_011886  Achl_3561  transcriptional regulator, LuxR family  93.55 
 
 
2727 bp  46.1  0.004  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
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