More than 300 homologs were found in PanDaTox collection
for query gene RPB_1286 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007778  RPB_1286  HAD family hydrolase  100 
 
 
229 aa  456  1e-127  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3933  HAD family hydrolase  85.71 
 
 
271 aa  380  1e-105  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4817  HAD-superfamily hydrolase, subfamily IA, variant 3  78.64 
 
 
235 aa  339  2e-92  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.821962  n/a   
 
 
-
 
NC_007925  RPC_4133  HAD family hydrolase  70.05 
 
 
223 aa  276  2e-73  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1791  putative haloacid dehalogenase/epoxide hydrolase  54.5 
 
 
218 aa  201  9.999999999999999e-51  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_0935  HAD family hydrolase  41.13 
 
 
235 aa  159  2e-38  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.941543  normal 
 
 
-
 
NC_011369  Rleg2_0846  HAD-superfamily hydrolase, subfamily IA, variant 3  40 
 
 
231 aa  143  2e-33  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.814852 
 
 
-
 
NC_009012  Cthe_0780  HAD family hydrolase  38.07 
 
 
227 aa  142  6e-33  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_3346  HAD family hydrolase  36.32 
 
 
221 aa  133  1.9999999999999998e-30  Caulobacter sp. K31  Bacteria  normal  0.363754  normal 
 
 
-
 
NC_013457  VEA_001299  CbbY family protein  35.05 
 
 
216 aa  133  3e-30  Vibrio sp. Ex25  Bacteria  normal  0.916657  n/a   
 
 
-
 
NC_007413  Ava_3074  HAD family hydrolase  38.6 
 
 
222 aa  130  2.0000000000000002e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_05174  phosphoglycolate phosphatase  35.68 
 
 
256 aa  130  2.0000000000000002e-29  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011989  Avi_1034  hydrolase  38.73 
 
 
217 aa  129  4.0000000000000003e-29  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_0452  HAD-superfamily hydrolase, subfamily IA, variant 3  37.04 
 
 
227 aa  128  6e-29  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_010577  XfasM23_0479  HAD family hydrolase  39.9 
 
 
225 aa  120  1.9999999999999998e-26  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_0037  haloacid dehalogenase/epoxide hydrolase family protein  36.32 
 
 
219 aa  119  3e-26  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_0542  hydrolase  39.9 
 
 
225 aa  119  4.9999999999999996e-26  Xylella fastidiosa M12  Bacteria  normal  0.491879  n/a   
 
 
-
 
NC_011661  Dtur_0461  HAD-superfamily hydrolase, subfamily IA, variant 3  33.18 
 
 
217 aa  117  9.999999999999999e-26  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_3528  HAD family hydrolase  35.21 
 
 
222 aa  117  9.999999999999999e-26  Psychromonas ingrahamii 37  Bacteria  normal  0.894258  hitchhiker  0.00350401 
 
 
-
 
NC_013517  Sterm_2266  HAD-superfamily hydrolase, subfamily IA, variant 3  32.39 
 
 
220 aa  117  1.9999999999999998e-25  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_03084  HAD superfamily hydrolase  38.35 
 
 
226 aa  116  3e-25  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1634  HAD-superfamily hydrolase, subfamily IA, variant 3  34.8 
 
 
221 aa  114  1.0000000000000001e-24  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0501975  n/a   
 
 
-
 
NC_007947  Mfla_1729  HAD family hydrolase  32.46 
 
 
728 aa  110  2.0000000000000002e-23  Methylobacillus flagellatus KT  Bacteria  normal  0.696153  hitchhiker  0.000289006 
 
 
-
 
NC_009512  Pput_3689  HAD family hydrolase  33.8 
 
 
707 aa  105  5e-22  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2212  HAD-superfamily hydrolase, subfamily IA, variant 3  38.27 
 
 
220 aa  103  3e-21  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_2267  HAD-superfamily hydrolase, subfamily IA, variant 3  31.05 
 
 
219 aa  102  5e-21  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2052  HAD superfamily hydrolase  32.87 
 
 
707 aa  102  7e-21  Pseudomonas putida KT2440  Bacteria  normal  0.380026  normal 
 
 
-
 
NC_010501  PputW619_2172  HAD family hydrolase  34.9 
 
 
710 aa  100  1e-20  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_1571  HAD family hydrolase  35.26 
 
 
714 aa  100  2e-20  Pseudomonas putida GB-1  Bacteria  normal  normal  0.882263 
 
 
-
 
NC_013595  Sros_7385  HAD-superfamily hydrolase, subfamily IA  36.36 
 
 
248 aa  99.8  3e-20  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_0864  HAD family hydrolase  36.08 
 
 
226 aa  100  3e-20  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5916  HAD family hydrolase  36.9 
 
 
218 aa  99.8  3e-20  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0345843  normal  0.0351614 
 
 
-
 
NC_008044  TM1040_1460  HAD family hydrolase  34.78 
 
 
229 aa  99  5e-20  Ruegeria sp. TM1040  Bacteria  hitchhiker  0.00552213  normal  0.266811 
 
 
-
 
NC_008700  Sama_0381  2-deoxyglucose-6-phosphatase  36.32 
 
 
221 aa  99.4  5e-20  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0071153  normal  0.324571 
 
 
-
 
NC_002977  MCA2733  HAD-superfamily hydrolase, subfamily IA, variant 3 family protein  36.71 
 
 
237 aa  97.4  2e-19  Methylococcus capsulatus str. Bath  Bacteria  normal  0.53567  n/a   
 
 
-
 
NC_009338  Mflv_3054  HAD family hydrolase  34.8 
 
 
224 aa  97.1  2e-19  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.751068  normal  0.223571 
 
 
-
 
NC_013526  Tter_2485  HAD-superfamily hydrolase, subfamily IA, variant 3  32.82 
 
 
238 aa  96.7  3e-19  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2523  HAD family hydrolase  34.55 
 
 
219 aa  95.9  4e-19  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.000000000119514  n/a   
 
 
-
 
NC_013235  Namu_2787  HAD-superfamily hydrolase, subfamily IA, variant 3  35.47 
 
 
230 aa  96.3  4e-19  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00137861  hitchhiker  0.0000132599 
 
 
-
 
NC_008148  Rxyl_0905  HAD family hydrolase  31.47 
 
 
204 aa  96.3  4e-19  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.427836  n/a   
 
 
-
 
NC_010001  Cphy_2790  HAD family hydrolase  29.41 
 
 
223 aa  95.9  5e-19  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_2293  HAD-superfamily hydrolase, subfamily IA, variant 3  36.79 
 
 
218 aa  95.9  5e-19  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.0000494788  n/a   
 
 
-
 
NC_008530  LGAS_1217  HAD family sugar phosphatase  29.6 
 
 
226 aa  95.5  5e-19  Lactobacillus gasseri ATCC 33323  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_1550  HAD-superfamily hydrolase, subfamily IA, variant 3  34.74 
 
 
249 aa  95.5  6e-19  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.204001 
 
 
-
 
NC_010831  Cphamn1_0520  HAD-superfamily hydrolase, subfamily IA, variant 3  36.04 
 
 
217 aa  95.5  6e-19  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_39300  haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED  32.55 
 
 
218 aa  95.5  7e-19  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_1743  HAD-superfamily hydrolase, subfamily IA, variant 3  34.21 
 
 
227 aa  95.1  8e-19  Geobacillus sp. WCH70  Bacteria  normal  0.293469  n/a   
 
 
-
 
NC_009012  Cthe_3073  HAD family hydrolase  32.98 
 
 
223 aa  95.1  8e-19  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00582956  n/a   
 
 
-
 
NC_009076  BURPS1106A_1066  haloacid dehalogenase, IA family protein  35.9 
 
 
224 aa  94.7  9e-19  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_3473  HAD family hydrolase  34.3 
 
 
243 aa  94.7  1e-18  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_006348  BMA0717  HAD-superfamily hydrolase  35.9 
 
 
224 aa  94  2e-18  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_1218  putative hydrolase  35.71 
 
 
762 aa  93.6  2e-18  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_0473  HAD-superfamily hydrolase, subfamily IA, variant 3  36.79 
 
 
211 aa  93.6  2e-18  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.0000148872  normal 
 
 
-
 
NC_009080  BMA10247_1609  HAD-superfamily hydrolase  35.9 
 
 
224 aa  94  2e-18  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_2412  HAD-superfamily hydrolase, subfamily IA, variant 3  34.07 
 
 
222 aa  94  2e-18  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009074  BURPS668_1060  haloacid dehalogenase, IA family protein  35.9 
 
 
224 aa  94  2e-18  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2296  HAD-superfamily hydrolase  35.9 
 
 
224 aa  94  2e-18  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2990  HAD-superfamily hydrolase  35.9 
 
 
224 aa  94  2e-18  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_5789  HAD-superfamily hydrolase subfamily IA, variant 3  33.64 
 
 
248 aa  93.2  3e-18  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.805096 
 
 
-
 
NC_007947  Mfla_1543  HAD family hydrolase  34.83 
 
 
218 aa  93.2  3e-18  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.290377 
 
 
-
 
NC_014165  Tbis_1853  HAD-superfamily hydrolase  34.11 
 
 
213 aa  93.2  3e-18  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_2245  HAD-superfamily hydrolase, subfamily IA, variant 3  39.04 
 
 
247 aa  93.2  3e-18  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.56873  normal 
 
 
-
 
NC_007492  Pfl01_1752  HAD family hydrolase  37.31 
 
 
232 aa  92  6e-18  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007955  Mbur_1556  HAD family hydrolase  35.11 
 
 
232 aa  92  6e-18  Methanococcoides burtonii DSM 6242  Archaea  decreased coverage  0.0000000000353855  n/a   
 
 
-
 
NC_010003  Pmob_0452  HAD family hydrolase  28.21 
 
 
221 aa  92.4  6e-18  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_1566  HAD family hydrolase  31.07 
 
 
216 aa  90.9  1e-17  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4498  HAD-superfamily hydrolase subfamily IA, variant 3  32.29 
 
 
223 aa  91.7  1e-17  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.511661  normal  0.0143777 
 
 
-
 
NC_009486  Tpet_1517  HAD family hydrolase  31.07 
 
 
216 aa  90.5  2e-17  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0269  haloacid dehalogenase, IA family protein  30.48 
 
 
217 aa  90.1  2e-17  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_32070  haloacid dehalogenase superfamily enzyme, subfamily IA  31.44 
 
 
227 aa  89.7  3e-17  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.466176  normal  0.444114 
 
 
-
 
NC_003295  RSc0271  hypothetical protein  33.33 
 
 
229 aa  89.4  4e-17  Ralstonia solanacearum GMI1000  Bacteria  normal  0.586518  normal 
 
 
-
 
NC_011831  Cagg_1516  HAD-superfamily hydrolase, subfamily IA, variant 3  36.41 
 
 
227 aa  89.4  5e-17  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_0260  haloacid dehalogenase, IA family protein  30.48 
 
 
217 aa  89  5e-17  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B0922  hydrolase, haloacid dehalogenase-like family  31.58 
 
 
235 aa  89  6e-17  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_2205  HAD-superfamily hydrolase subfamily IA, variant 3  32.12 
 
 
228 aa  88.2  9e-17  Meiothermus ruber DSM 1279  Bacteria  normal  0.322675  normal 
 
 
-
 
NC_013205  Aaci_2469  HAD-superfamily hydrolase, subfamily IA, variant 3  31.22 
 
 
224 aa  87.8  1e-16  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.618161  n/a   
 
 
-
 
CP001637  EcDH1_0994  beta-phosphoglucomutase family hydrolase  33.9 
 
 
188 aa  87  2e-16  Escherichia coli DH1  Bacteria  hitchhiker  0.000000122872  n/a   
 
 
-
 
NC_014212  Mesil_0179  HAD-superfamily hydrolase, subfamily IA, variant 3  33.17 
 
 
218 aa  87  2e-16  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_02312  putative unknown enzyme  35.56 
 
 
224 aa  87  2e-16  Alteromonas macleodii 'Deep ecotype'  Bacteria  hitchhiker  0.00322256  n/a   
 
 
-
 
NC_010655  Amuc_1509  HAD-superfamily hydrolase, subfamily IA, variant 3  34.9 
 
 
231 aa  87.4  2e-16  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  hitchhiker  0.000193428 
 
 
-
 
NC_013521  Sked_20940  haloacid dehalogenase superfamily enzyme, subfamily IA  33.51 
 
 
273 aa  86.7  3e-16  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.650807 
 
 
-
 
NC_011725  BCB4264_A4313  hydrolase, haloacid dehalogenase-like family  30.69 
 
 
235 aa  86.3  3e-16  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_0437  2-deoxyglucose-6-phosphatase  29.47 
 
 
221 aa  86.7  3e-16  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.000647119  hitchhiker  0.00000756317 
 
 
-
 
NC_013457  VEA_000391  2-deoxyglucose-6-phosphate hydrolase YniC  29.06 
 
 
218 aa  86.3  4e-16  Vibrio sp. Ex25  Bacteria  normal  0.0106831  n/a   
 
 
-
 
NC_008345  Sfri_3772  2-deoxyglucose-6-phosphatase  31.58 
 
 
218 aa  86.3  4e-16  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_1197  HAD-superfamily hydrolase, subfamily IA, variant 3  30.98 
 
 
225 aa  86.3  4e-16  Jonesia denitrificans DSM 20603  Bacteria  normal  0.0955551  normal  0.148864 
 
 
-
 
NC_009667  Oant_1388  HAD family hydrolase  33.71 
 
 
223 aa  85.9  5e-16  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0109  HAD family hydrolase  30.98 
 
 
223 aa  85.9  5e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  decreased coverage  0.00453013 
 
 
-
 
NC_013530  Xcel_1481  HAD-superfamily hydrolase, subfamily IA, variant 3  36.76 
 
 
233 aa  85.5  5e-16  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_3425  2-deoxyglucose-6-phosphatase  29.82 
 
 
223 aa  85.5  6e-16  Shewanella loihica PV-4  Bacteria  hitchhiker  0.000919178  normal 
 
 
-
 
NC_013169  Ksed_13910  haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED  37.57 
 
 
232 aa  85.5  6e-16  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.491881  normal 
 
 
-
 
NC_008781  Pnap_2743  HAD family hydrolase  30.7 
 
 
227 aa  85.5  6e-16  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.994994  normal  0.0511558 
 
 
-
 
NC_013093  Amir_7029  HAD-superfamily hydrolase, subfamily IA, variant 3  32.43 
 
 
213 aa  85.5  6e-16  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010644  Emin_0820  HAD family hydrolase  28.7 
 
 
221 aa  85.5  7e-16  Elusimicrobium minutum Pei191  Bacteria  normal  0.420721  hitchhiker  0.00000000104285 
 
 
-
 
NC_009921  Franean1_1853  HAD family hydrolase  32.8 
 
 
235 aa  85.1  8e-16  Frankia sp. EAN1pec  Bacteria  normal  0.147437  normal  0.0157174 
 
 
-
 
NC_007604  Synpcc7942_0085  HAD family hydrolase  34.78 
 
 
228 aa  85.1  9e-16  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_1913  HAD-superfamily hydrolase, subfamily IA, variant 3  33.33 
 
 
245 aa  84.7  0.000000000000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000000014808 
 
 
-
 
NC_008009  Acid345_3787  HAD family hydrolase  28.34 
 
 
238 aa  84.7  0.000000000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.85061  normal 
 
 
-
 
NC_009665  Shew185_3926  2-deoxyglucose-6-phosphatase  30.41 
 
 
219 aa  84.3  0.000000000000001  Shewanella baltica OS185  Bacteria  hitchhiker  0.00000000238408  n/a   
 
 
-
 
NC_008577  Shewana3_0432  2-deoxyglucose-6-phosphatase  31.44 
 
 
218 aa  84.7  0.000000000000001  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000498152  normal 
 
 
-
 
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