9 homologs were found in PanDaTox collection
for query gene RPB_0034 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007778  RPB_0034  hypothetical protein  100 
 
 
148 aa  289  7e-78  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.26926  normal 
 
 
-
 
NC_011004  Rpal_2120  hypothetical protein  78.32 
 
 
150 aa  221  2e-57  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0217734  n/a   
 
 
-
 
NC_007958  RPD_3089  hypothetical protein  78.17 
 
 
148 aa  217  5e-56  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.693168  normal  0.0494541 
 
 
-
 
NC_007925  RPC_2963  hypothetical protein  69.86 
 
 
148 aa  212  1e-54  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.257701  normal 
 
 
-
 
NC_003295  RSc1848  hypothetical protein  48.57 
 
 
151 aa  124  4e-28  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0188402  normal  0.0439501 
 
 
-
 
NC_009784  VIBHAR_06477  hypothetical protein  46.21 
 
 
154 aa  123  1e-27  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007643  Rru_A1442  putative lipoprotein  51.06 
 
 
159 aa  114  3e-25  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.425847  n/a   
 
 
-
 
NC_009092  Shew_3149  putative lipoprotein  42.57 
 
 
152 aa  104  4e-22  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_1104  putative lipoprotein  41.13 
 
 
152 aa  72.4  2e-12  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.943049 
 
 
-
 
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