11 homologs were found in PanDaTox collection
for query gene RPB_0015 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007778  RPB_0015  Cbb3-type cytochrome oxidase component  100 
 
 
54 aa  109  1e-23  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0732  Cbb3-type cytochrome oxidase component  87.04 
 
 
54 aa  97.8  4e-20  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0430029  normal 
 
 
-
 
NC_007925  RPC_0013  Cbb3-type cytochrome oxidase component  70.37 
 
 
54 aa  80.9  6e-15  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0018  Cbb3-type cytochrome oxidase component  68.52 
 
 
54 aa  80.1  1e-14  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_3661  Cbb3-type cytochrome oxidase component  48 
 
 
50 aa  51.2  4e-06  Methylocella silvestris BL2  Bacteria  n/a    normal  0.678332 
 
 
-
 
NC_008347  Mmar10_1151  Cbb3-type cytochrome oxidase component  47.83 
 
 
65 aa  47.4  6e-05  Maricaulis maris MCS10  Bacteria  normal  0.340113  normal  0.0945912 
 
 
-
 
NC_010511  M446_3272  Cbb3-type cytochrome oxidase component  45.65 
 
 
49 aa  47  9e-05  Methylobacterium sp. 4-46  Bacteria  normal  0.348375  normal  0.349252 
 
 
-
 
NC_009719  Plav_1530  Cbb3-type cytochrome oxidase component  61.29 
 
 
74 aa  46.6  0.0001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_2439  Cbb3-type cytochrome oxidase component  62.5 
 
 
52 aa  45.4  0.0003  Caulobacter sp. K31  Bacteria  normal  0.0735007  normal 
 
 
-
 
NC_011894  Mnod_2113  Cbb3-type cytochrome oxidase component  53.12 
 
 
49 aa  42.4  0.002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5232  Cbb3-type cytochrome oxidase component  53.12 
 
 
49 aa  42.4  0.002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.346286  n/a   
 
 
-
 
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