14 homologs were found in PanDaTox collection
for query gene RPB_0008 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007778  RPB_0008  hypothetical protein  100 
 
 
92 aa  181  3e-45  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.791262  normal 
 
 
-
 
NC_007958  RPD_0739  hypothetical protein  86.96 
 
 
74 aa  119  2e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0011  hypothetical protein  75.38 
 
 
69 aa  95.9  2e-19  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0894998  n/a   
 
 
-
 
NC_007778  RPB_1035  hypothetical protein  55.74 
 
 
66 aa  61.6  3e-09  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_2991  hypothetical protein  58.82 
 
 
114 aa  60.1  1e-08  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.310456  normal 
 
 
-
 
NC_007958  RPD_3220  hypothetical protein  55.17 
 
 
63 aa  58.9  2e-08  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.318816  normal 
 
 
-
 
NC_009485  BBta_2219  hypothetical protein  57.41 
 
 
63 aa  58.9  2e-08  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0200525 
 
 
-
 
NC_011004  Rpal_1615  hypothetical protein  57.41 
 
 
63 aa  56.6  1e-07  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.180845  n/a   
 
 
-
 
NC_007964  Nham_1089  hypothetical protein  51.92 
 
 
94 aa  55.1  4e-07  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_3019  hypothetical protein  56.6 
 
 
64 aa  53.5  1e-06  Methylobacterium sp. 4-46  Bacteria  normal  0.189985  normal  0.0594421 
 
 
-
 
NC_011894  Mnod_5112  hypothetical protein  49.18 
 
 
65 aa  50.8  6e-06  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_0173  hypothetical protein  45.28 
 
 
117 aa  47  8e-05  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_009485  BBta_3278  hypothetical protein  52.5 
 
 
67 aa  42  0.003  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2421  hypothetical protein  50 
 
 
73 aa  41.6  0.004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
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