More than 300 homologs were found in PanDaTox collection
for query gene Psyr_4800 on replicon NC_007005
Organism: Pseudomonas syringae pv. syringae B728a



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004578  PSPTO_0378  DNA-binding heavy metal response regulator  99.55 
 
 
224 aa  453  1e-127  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_4800  heavy metal response regulator  100 
 
 
224 aa  456  1e-127  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  hitchhiker  0.00185939 
 
 
-
 
NC_007492  Pfl01_3624  two component heavy metal response transcriptional regulator  80.36 
 
 
224 aa  377  1e-103  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1174  two component heavy metal response transcriptional regulator  75.89 
 
 
224 aa  358  3e-98  Pseudomonas mendocina ymp  Bacteria  normal  0.216853  normal 
 
 
-
 
NC_002947  PP_1438  DNA-binding response regulator CzrR  74.89 
 
 
224 aa  353  1e-96  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4283  two component heavy metal response transcriptional regulator  74.89 
 
 
224 aa  353  1e-96  Pseudomonas putida F1  Bacteria  normal  0.0230752  normal 
 
 
-
 
NC_010322  PputGB1_4369  two component heavy metal response transcriptional regulator  73.99 
 
 
224 aa  350  1e-95  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0732935 
 
 
-
 
NC_010322  PputGB1_0061  two component heavy metal response transcriptional regulator  75.89 
 
 
224 aa  349  2e-95  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0868462 
 
 
-
 
NC_002947  PP_0047  DNA-binding heavy metal response regulator, putative  75.89 
 
 
224 aa  349  2e-95  Pseudomonas putida KT2440  Bacteria  normal  0.116112  hitchhiker  0.00000494979 
 
 
-
 
NC_010501  PputW619_0064  two component heavy metal response transcriptional regulator  75.89 
 
 
224 aa  349  2e-95  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.000118539 
 
 
-
 
NC_009512  Pput_0061  two component heavy metal response transcriptional regulator  75.89 
 
 
224 aa  349  2e-95  Pseudomonas putida F1  Bacteria  normal  0.382659  hitchhiker  0.0034413 
 
 
-
 
NC_009656  PSPA7_2714  putative two-component response regulator  68.61 
 
 
224 aa  327  1.0000000000000001e-88  Pseudomonas aeruginosa PA7  Bacteria  normal  0.681326  n/a   
 
 
-
 
NC_008463  PA14_31960  putative two-component response regulator  68.61 
 
 
224 aa  327  1.0000000000000001e-88  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.029957  normal 
 
 
-
 
NC_002947  PP_0029  DNA-binding response regulator CzrR  68.61 
 
 
224 aa  326  2.0000000000000001e-88  Pseudomonas putida KT2440  Bacteria  normal  hitchhiker  0.00000398254 
 
 
-
 
NC_010322  PputGB1_0043  two component heavy metal response transcriptional regulator  68.61 
 
 
224 aa  326  2.0000000000000001e-88  Pseudomonas putida GB-1  Bacteria  normal  0.216902  normal 
 
 
-
 
NC_009512  Pput_0043  two component heavy metal response transcriptional regulator  68.61 
 
 
224 aa  326  2.0000000000000001e-88  Pseudomonas putida F1  Bacteria  normal  0.955175  hitchhiker  0.00039578 
 
 
-
 
NC_010501  PputW619_0046  two component heavy metal response transcriptional regulator  68.61 
 
 
224 aa  326  2.0000000000000001e-88  Pseudomonas putida W619  Bacteria  normal  0.398344  normal  0.151204 
 
 
-
 
NC_008758  Pnap_4558  two component heavy metal response transcriptional regulator  61.43 
 
 
226 aa  288  6e-77  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_3962  two component heavy metal response transcriptional regulator  63.39 
 
 
225 aa  286  2.9999999999999996e-76  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010557  BamMC406_5744  two component heavy metal response transcriptional regulator  63.39 
 
 
225 aa  285  5.999999999999999e-76  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0360294  normal  0.749662 
 
 
-
 
NC_008392  Bamb_5988  two component heavy metal response transcriptional regulator  62.95 
 
 
225 aa  284  5.999999999999999e-76  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_010512  Bcenmc03_6987  two component heavy metal response transcriptional regulator  63.84 
 
 
225 aa  282  3.0000000000000004e-75  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.67799  normal  0.586494 
 
 
-
 
NC_008060  Bcen_1505  two component heavy metal response transcriptional regulator  63.84 
 
 
225 aa  282  3.0000000000000004e-75  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.228186  n/a   
 
 
-
 
NC_008544  Bcen2424_6324  two component heavy metal response transcriptional regulator  63.84 
 
 
225 aa  282  3.0000000000000004e-75  Burkholderia cenocepacia HI2424  Bacteria  normal  0.313253  normal 
 
 
-
 
NC_007347  Reut_A1815  two component heavy metal response transcriptional regulator  62.33 
 
 
224 aa  281  5.000000000000001e-75  Ralstonia eutropha JMP134  Bacteria  normal  0.275759  n/a   
 
 
-
 
NC_007952  Bxe_B1389  two component heavy metal response transcriptional regulator  62.95 
 
 
225 aa  281  7.000000000000001e-75  Burkholderia xenovorans LB400  Bacteria  normal  0.717226  normal  0.091392 
 
 
-
 
NC_007973  Rmet_1751  two component heavy metal response transcriptional regulator  62.05 
 
 
224 aa  278  4e-74  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.0784096 
 
 
-
 
NC_010676  Bphyt_5224  two component heavy metal response transcriptional regulator, winged helix family  62.05 
 
 
225 aa  277  8e-74  Burkholderia phytofirmans PsJN  Bacteria  normal  0.57611  normal 
 
 
-
 
NC_010682  Rpic_1780  two component heavy metal response transcriptional regulator, winged helix family  60.44 
 
 
228 aa  277  9e-74  Ralstonia pickettii 12J  Bacteria  normal  0.817023  normal  0.826624 
 
 
-
 
NC_010682  Rpic_1841  two component heavy metal response transcriptional regulator, winged helix family  61.26 
 
 
228 aa  275  3e-73  Ralstonia pickettii 12J  Bacteria  normal  0.99331  hitchhiker  0.00000222676 
 
 
-
 
NC_010682  Rpic_1718  two component heavy metal response transcriptional regulator, winged helix family  60 
 
 
228 aa  275  3e-73  Ralstonia pickettii 12J  Bacteria  normal  0.348336  normal 
 
 
-
 
NC_012849  Rpic12D_5335  two component heavy metal response transcriptional regulator, winged helix family  60 
 
 
228 aa  275  3e-73  Ralstonia pickettii 12D  Bacteria  normal  0.733276  normal  0.970872 
 
 
-
 
NC_010682  Rpic_1760  two component heavy metal response transcriptional regulator, winged helix family  58.82 
 
 
225 aa  276  3e-73  Ralstonia pickettii 12J  Bacteria  normal  0.133831  normal  0.402692 
 
 
-
 
NC_007971  Rmet_5978  regulatory protein CzcR  58.82 
 
 
225 aa  273  1.0000000000000001e-72  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.0000269255  normal  0.0723212 
 
 
-
 
NC_012849  Rpic12D_5099  two component heavy metal response transcriptional regulator, winged helix family  60.36 
 
 
228 aa  273  2.0000000000000002e-72  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0773075 
 
 
-
 
NC_003296  RSp0489  response regulator for cobalt zinc cadmium resistance transcription regulator protein  58.82 
 
 
224 aa  272  3e-72  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_2474  heavy metal response regulator  59.82 
 
 
223 aa  272  3e-72  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_3985  two component heavy metal response transcriptional regulator, winged helix family  60.44 
 
 
226 aa  272  3e-72  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_5186  two component heavy metal response transcriptional regulator  58.3 
 
 
223 aa  272  3e-72  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_2259  two component heavy metal response transcriptional regulator  59.11 
 
 
225 aa  271  4.0000000000000004e-72  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_3349  two component heavy metal response transcriptional regulator  58.3 
 
 
223 aa  271  6e-72  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B3961  heavy metal response regulator  58.82 
 
 
229 aa  271  7e-72  Ralstonia eutropha JMP134  Bacteria  decreased coverage  0.00889091  n/a   
 
 
-
 
NC_010002  Daci_0451  two component heavy metal response transcriptional regulator  59.19 
 
 
230 aa  271  7e-72  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_003296  RSp0655  two component response regulator transcription regulator protein  59.91 
 
 
228 aa  270  2e-71  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.81937 
 
 
-
 
NC_010515  Bcenmc03_4106  two component heavy metal response transcriptional regulator  57.4 
 
 
223 aa  268  2.9999999999999997e-71  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.971428 
 
 
-
 
NC_011662  Tmz1t_4055  two component heavy metal response transcriptional regulator, winged helix family  59.11 
 
 
226 aa  268  5e-71  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_5178  two component heavy metal response transcriptional regulator  58.22 
 
 
225 aa  268  5.9999999999999995e-71  Pseudomonas putida W619  Bacteria  normal  0.341313  normal 
 
 
-
 
NC_008782  Ajs_1236  two component heavy metal response transcriptional regulator  59.82 
 
 
219 aa  268  7e-71  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_2337  two component heavy metal response transcriptional regulator  58.3 
 
 
227 aa  267  8e-71  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C1381  two component heavy metal response transcriptional regulator  56.56 
 
 
224 aa  267  8.999999999999999e-71  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.961918 
 
 
-
 
NC_008061  Bcen_4757  two component heavy metal response transcriptional regulator  56.95 
 
 
223 aa  267  1e-70  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0878196  n/a   
 
 
-
 
NC_008543  Bcen2424_3410  two component heavy metal response transcriptional regulator  56.95 
 
 
223 aa  267  1e-70  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_010070  Bmul_6295  two component heavy metal response transcriptional regulator  57.4 
 
 
223 aa  266  1e-70  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.803537  normal  0.219108 
 
 
-
 
NC_007005  Psyr_1497  heavy metal response regulator  58.41 
 
 
228 aa  266  2e-70  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_1091  two component heavy metal response transcriptional regulator  57.71 
 
 
232 aa  266  2e-70  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0422  two component heavy metal response transcriptional regulator  59.01 
 
 
227 aa  265  4e-70  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B2768  two component heavy metal response transcriptional regulator  58.74 
 
 
223 aa  265  5.999999999999999e-70  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_1986  two component heavy metal response transcriptional regulator  57.59 
 
 
223 aa  265  5.999999999999999e-70  Geobacter uraniireducens Rf4  Bacteria  normal  0.0566795  n/a   
 
 
-
 
NC_012791  Vapar_3559  two component heavy metal response transcriptional regulator, winged helix family  56.05 
 
 
225 aa  264  1e-69  Variovorax paradoxus S110  Bacteria  normal  0.710681  n/a   
 
 
-
 
NC_007404  Tbd_1749  two component heavy metal response transcriptional regulator  60.36 
 
 
242 aa  264  1e-69  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0202  two component heavy metal response transcriptional regulator  57.66 
 
 
226 aa  263  1e-69  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3892  putative two-component response regulator  55.61 
 
 
229 aa  262  4e-69  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_2348  putative two-component response regulator  57.78 
 
 
228 aa  261  8e-69  Pseudomonas aeruginosa PA7  Bacteria  normal  0.804247  n/a   
 
 
-
 
NC_011901  Tgr7_1208  two component heavy metal response transcriptional regulator, winged helix family  60 
 
 
226 aa  260  8.999999999999999e-69  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_2165  two component heavy metal response transcriptional regulator, winged helix family  57.85 
 
 
232 aa  260  1e-68  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.77286 
 
 
-
 
NC_007347  Reut_A2490  heavy metal response regulator  61.26 
 
 
228 aa  260  1e-68  Ralstonia eutropha JMP134  Bacteria  normal  0.289616  n/a   
 
 
-
 
NC_008825  Mpe_A1629  two-component response regulator  55.51 
 
 
228 aa  260  1e-68  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.128663 
 
 
-
 
NC_006349  BMAA1028  DNA-binding response regulator IrlR  57.4 
 
 
229 aa  259  2e-68  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0282692  n/a   
 
 
-
 
NC_008835  BMA10229_0402  transcriptional activator IrlR  57.4 
 
 
229 aa  259  2e-68  Burkholderia mallei NCTC 10229  Bacteria  normal  0.0800763  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0030  DNA-binding response regulator IrlR  57.4 
 
 
229 aa  259  2e-68  Burkholderia pseudomallei 1710b  Bacteria  normal  0.122488  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1439  transcriptional activator IrlR  57.4 
 
 
229 aa  259  2e-68  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_0010  transcriptional activator IrlR  57.4 
 
 
229 aa  259  2e-68  Burkholderia mallei SAVP1  Bacteria  normal  0.121051  n/a   
 
 
-
 
NC_009079  BMA10247_A1180  transcriptional activator IrlR  57.4 
 
 
229 aa  259  2e-68  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0831411  n/a   
 
 
-
 
NC_008463  PA14_45880  putative two-component response regulator  54.71 
 
 
229 aa  260  2e-68  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.954426 
 
 
-
 
NC_009075  BURPS668_A1524  transcriptional activator protein IrlR  57.4 
 
 
229 aa  259  2e-68  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_0019  two component heavy metal response transcriptional regulator  56.44 
 
 
225 aa  258  3e-68  Pseudomonas putida GB-1  Bacteria  normal  0.593373  normal 
 
 
-
 
NC_007492  Pfl01_3379  two component heavy metal response transcriptional regulator  58.26 
 
 
223 aa  259  3e-68  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0017  two component heavy metal response transcriptional regulator  56.44 
 
 
225 aa  258  3e-68  Pseudomonas putida F1  Bacteria  normal  normal  0.0468746 
 
 
-
 
NC_010501  PputW619_0017  two component heavy metal response transcriptional regulator  56.44 
 
 
225 aa  258  3e-68  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_1948  response regulator receiver domain-containing protein  55.56 
 
 
226 aa  258  4e-68  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.679676 
 
 
-
 
NC_007650  BTH_II1376  DNA-binding response regulator IrlR  56.95 
 
 
229 aa  258  5.0000000000000005e-68  Burkholderia thailandensis E264  Bacteria  normal  0.498923  n/a   
 
 
-
 
NC_008782  Ajs_1461  two component heavy metal response transcriptional regulator  60 
 
 
227 aa  258  6e-68  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1748a  hypothetical protein  56.36 
 
 
223 aa  258  7e-68  Burkholderia xenovorans LB400  Bacteria  normal  0.0697031  normal  0.305387 
 
 
-
 
NC_010681  Bphyt_1510  two component heavy metal response transcriptional regulator, winged helix family  58.3 
 
 
227 aa  256  1e-67  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_5383  two component heavy metal response transcriptional regulator  55.56 
 
 
225 aa  257  1e-67  Pseudomonas putida KT2440  Bacteria  normal  normal  0.651671 
 
 
-
 
NC_008463  PA14_27810  putative two-component response regulator  56.44 
 
 
226 aa  257  1e-67  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_001641  putative two component response regulator transcription regulator protein  52.44 
 
 
230 aa  255  3e-67  Vibrio sp. Ex25  Bacteria  normal  0.170142  n/a   
 
 
-
 
NC_010682  Rpic_1742  two component heavy metal response transcriptional regulator, winged helix family  59.56 
 
 
228 aa  255  5e-67  Ralstonia pickettii 12J  Bacteria  normal  normal  0.595604 
 
 
-
 
NC_010676  Bphyt_4933  two component heavy metal response transcriptional regulator, winged helix family  55.91 
 
 
223 aa  255  5e-67  Burkholderia phytofirmans PsJN  Bacteria  normal  0.461594  normal  0.344735 
 
 
-
 
NC_010515  Bcenmc03_3842  two component heavy metal response transcriptional regulator  56.05 
 
 
227 aa  254  6e-67  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.67414 
 
 
-
 
NC_010501  PputW619_4391  two component heavy metal response transcriptional regulator  56.05 
 
 
224 aa  254  7e-67  Pseudomonas putida W619  Bacteria  normal  normal  0.593256 
 
 
-
 
NC_008061  Bcen_4683  two component heavy metal response transcriptional regulator  56.05 
 
 
228 aa  254  7e-67  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.222547  n/a   
 
 
-
 
NC_008786  Veis_0344  two component heavy metal response transcriptional regulator  56.05 
 
 
231 aa  254  7e-67  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_3680  two component heavy metal response transcriptional regulator  56.05 
 
 
228 aa  254  7e-67  Burkholderia cenocepacia HI2424  Bacteria  normal  0.224842  normal 
 
 
-
 
NC_007005  Psyr_3374  heavy metal response regulator  56.05 
 
 
229 aa  254  8e-67  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2234  two component heavy metal response transcriptional regulator  57.33 
 
 
225 aa  254  8e-67  Pseudomonas mendocina ymp  Bacteria  normal  0.162422  normal 
 
 
-
 
NC_007511  Bcep18194_B2430  two component heavy metal response transcriptional regulator  55.61 
 
 
227 aa  253  1.0000000000000001e-66  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3258  two component heavy metal response transcriptional regulator  53.6 
 
 
238 aa  253  1.0000000000000001e-66  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00206307  normal  0.0675777 
 
 
-
 
NC_010468  EcolC_3426  DNA-binding transcriptional activator CusR  54.71 
 
 
226 aa  254  1.0000000000000001e-66  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010070  Bmul_6173  two component heavy metal response transcriptional regulator  55.61 
 
 
228 aa  253  2.0000000000000002e-66  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.400074 
 
 
-
 
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