38 homologs were found in PanDaTox collection
for query gene Psyr_3047 on replicon NC_007005
Organism: Pseudomonas syringae pv. syringae B728a



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007005  Psyr_3047  helix-hairpin-helix DNA-binding motif-containing protein  100 
 
 
149 aa  300  5.000000000000001e-81  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0185896 
 
 
-
 
NC_004578  PSPTO_3181  transcriptional regulator, putative  73.83 
 
 
149 aa  222  1e-57  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.387057  n/a   
 
 
-
 
NC_004578  PSPTO_3025  DNA-binding protein, putative  62.5 
 
 
120 aa  88.2  4e-17  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.111076  n/a   
 
 
-
 
NC_010322  PputGB1_3673  XRE family transcriptional regulator  50.63 
 
 
129 aa  87  7e-17  Pseudomonas putida GB-1  Bacteria  normal  0.151534  hitchhiker  0.000000782403 
 
 
-
 
NC_009512  Pput_1764  helix-turn-helix domain-containing protein  58.46 
 
 
129 aa  86.3  1e-16  Pseudomonas putida F1  Bacteria  normal  hitchhiker  0.00226226 
 
 
-
 
NC_010501  PputW619_3376  XRE family transcriptional regulator  39.83 
 
 
129 aa  84.7  4e-16  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_4100  Cro/CI family transcriptional regulator  56.92 
 
 
129 aa  82  0.000000000000002  Pseudomonas putida KT2440  Bacteria  normal  0.394089  normal  0.0554933 
 
 
-
 
NC_008060  Bcen_0314  XRE family transcriptional regulator  53.62 
 
 
116 aa  77.8  0.00000000000005  Burkholderia cenocepacia AU 1054  Bacteria  decreased coverage  0.0000214612  n/a   
 
 
-
 
NC_008542  Bcen2424_0797  XRE family transcriptional regulator  53.62 
 
 
116 aa  77.8  0.00000000000005  Burkholderia cenocepacia HI2424  Bacteria  decreased coverage  0.0000538753  n/a   
 
 
-
 
NC_010508  Bcenmc03_0766  Cro/CI family transcriptional regulator  50.72 
 
 
106 aa  73.6  0.000000000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.047378  normal 
 
 
-
 
NC_007005  Psyr_2898  helix-hairpin-helix DNA-binding motif-containing protein  64.06 
 
 
120 aa  72.8  0.000000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.270535  normal  0.294834 
 
 
-
 
NC_010515  Bcenmc03_4178  helix-turn-helix domain-containing protein  51.72 
 
 
130 aa  66.2  0.0000000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.886419  normal 
 
 
-
 
NC_008061  Bcen_4829  XRE family transcriptional regulator  51.72 
 
 
123 aa  65.9  0.0000000002  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.584136  n/a   
 
 
-
 
NC_007963  Csal_1365  putative phage repressor  50.82 
 
 
227 aa  65.5  0.0000000002  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_3337  XRE family transcriptional regulator  51.72 
 
 
123 aa  65.9  0.0000000002  Burkholderia cenocepacia HI2424  Bacteria  normal  0.98805  normal 
 
 
-
 
NC_010465  YPK_2310  XRE family transcriptional regulator  47.73 
 
 
130 aa  65.9  0.0000000002  Yersinia pseudotuberculosis YPIII  Bacteria  hitchhiker  0.0000103087  n/a   
 
 
-
 
NC_003295  RSc1907  putative DNA-binding repressor transcription regulator protein  49.18 
 
 
173 aa  63.5  0.0000000008  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0629084  normal 
 
 
-
 
NC_010002  Daci_2276  XRE family transcriptional regulator  47.69 
 
 
214 aa  63.2  0.000000001  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.0220665 
 
 
-
 
NC_008781  Pnap_3316  XRE family transcriptional regulator  47.69 
 
 
126 aa  61.6  0.000000003  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0996495  normal 
 
 
-
 
NC_010086  Bmul_4866  XRE family transcriptional regulator  51.56 
 
 
179 aa  60.8  0.000000006  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.894538  normal  0.194277 
 
 
-
 
NC_010508  Bcenmc03_0177  putative DNA-binding repressor transcription regulator protein  39.39 
 
 
149 aa  58.2  0.00000004  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_2710  XRE family transcriptional regulator  48.44 
 
 
116 aa  56.2  0.0000002  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.00207223  normal 
 
 
-
 
NC_010002  Daci_2585  XRE family transcriptional regulator  36.84 
 
 
110 aa  55.1  0.0000004  Delftia acidovorans SPH-1  Bacteria  hitchhiker  0.00026111  hitchhiker  0.00000611184 
 
 
-
 
NC_010002  Daci_2619  XRE family transcriptional regulator  36.84 
 
 
110 aa  55.1  0.0000004  Delftia acidovorans SPH-1  Bacteria  hitchhiker  0.000698613  hitchhiker  0.000000000219561 
 
 
-
 
NC_010002  Daci_1608  XRE family transcriptional regulator  38.71 
 
 
185 aa  53.5  0.0000009  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0405  hypothetical protein  31.58 
 
 
118 aa  51.6  0.000004  Thioalkalivibrio sp. HL-EbGR7  Bacteria  hitchhiker  0.000114125  n/a   
 
 
-
 
NC_013422  Hneap_1627  transcriptional regulator, XRE family  44.26 
 
 
135 aa  51.6  0.000004  Halothiobacillus neapolitanus c2  Bacteria  hitchhiker  0.00124147  n/a   
 
 
-
 
NC_009656  PSPA7_4463  XRE family transcriptional regulator  35.24 
 
 
117 aa  50.8  0.000007  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_2481  putative phage repressor  41.18 
 
 
230 aa  49.3  0.00002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008527  LACR_2142  XRE family transcriptional regulator  28.09 
 
 
175 aa  45.8  0.0002  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_01337  phage-related protei  40.68 
 
 
143 aa  45.1  0.0003  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.317958  n/a   
 
 
-
 
NC_011206  Lferr_0134  transcriptional regulator, XRE family  39.13 
 
 
152 aa  43.9  0.0007  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  hitchhiker  0.000191075  normal 
 
 
-
 
NC_011206  Lferr_1274  transcriptional regulator, XRE family  31.73 
 
 
152 aa  43.9  0.0008  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.222413  normal  0.176639 
 
 
-
 
NC_012917  PC1_2626  transcriptional regulator, XRE family  40.32 
 
 
137 aa  43.1  0.001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0239529  n/a   
 
 
-
 
NC_007760  Adeh_2436  XRE family transcriptional regulator  46.81 
 
 
68 aa  40.4  0.007  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.109963  n/a   
 
 
-
 
NC_011891  A2cp1_1522  transcriptional regulator, XRE family  46.81 
 
 
68 aa  40.4  0.007  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.379498  n/a   
 
 
-
 
NC_011145  AnaeK_1427  transcriptional regulator, XRE family  46.81 
 
 
68 aa  40.4  0.007  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1444  helix-turn-helix domain-containing protein  46.81 
 
 
68 aa  40.4  0.008  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.557197  normal 
 
 
-
 
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