More than 300 homologs were found in PanDaTox collection
for query gene PsycPRwf_1626 on replicon NC_009524
Organism: Psychrobacter sp. PRwf-1



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009524  PsycPRwf_1626  histone family protein DNA-binding protein  100 
 
 
90 aa  183  6e-46  Psychrobacter sp. PRwf-1  Bacteria  unclonable  0.00000000000133039  hitchhiker  0.00000000638901 
 
 
-
 
NC_007969  Pcryo_1653  histone-like DNA-binding protein  85.56 
 
 
90 aa  157  3e-38  Psychrobacter cryohalolentis K5  Bacteria  unclonable  0.00000047794  unclonable  0.0000440637 
 
 
 
NC_007204  Psyc_1474  putative DNA-binding protein HU-beta  84.44 
 
 
90 aa  155  1e-37  Psychrobacter arcticus 273-4  Bacteria  hitchhiker  0.0000000000000997119  hitchhiker  0.0000985943 
 
 
-
 
NC_013422  Hneap_0390  histone family protein DNA-binding protein  62.22 
 
 
90 aa  124  4.0000000000000003e-28  Halothiobacillus neapolitanus c2  Bacteria  decreased coverage  0.0000165854  n/a   
 
 
-
 
NC_011901  Tgr7_0942  histone family protein DNA-binding protein  61.11 
 
 
90 aa  119  1.9999999999999998e-26  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_1726  histone family protein DNA-binding protein  60 
 
 
90 aa  118  3e-26  Marinomonas sp. MWYL1  Bacteria  unclonable  0.00000000326644  hitchhiker  0.00672024 
 
 
-
 
NC_008740  Maqu_1837  histone family protein DNA-binding protein  61.8 
 
 
90 aa  117  4.9999999999999996e-26  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00431989  n/a   
 
 
-
 
NC_011898  Ccel_2424  histone family protein DNA-binding protein  62.22 
 
 
91 aa  116  9.999999999999999e-26  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000000394497  n/a   
 
 
-
 
NC_007520  Tcr_1180  histone-like DNA-binding protein  57.78 
 
 
90 aa  115  1.9999999999999998e-25  Thiomicrospira crunogena XCL-2  Bacteria  unclonable  2.95654e-16  n/a   
 
 
-
 
NC_013889  TK90_0576  histone family protein DNA-binding protein  60 
 
 
90 aa  115  3e-25  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0418926 
 
 
-
 
NC_011662  Tmz1t_2014  histone family protein DNA-binding protein  60 
 
 
90 aa  114  3e-25  Thauera sp. MZ1T  Bacteria  decreased coverage  0.000105311  n/a   
 
 
-
 
NC_010159  YpAngola_A3051  transcriptional regulator HU subunit beta  57.78 
 
 
90 aa  114  3.9999999999999997e-25  Yersinia pestis Angola  Bacteria  hitchhiker  0.00488463  normal 
 
 
-
 
NC_010465  YPK_3231  transcriptional regulator HU subunit beta  57.78 
 
 
90 aa  114  3.9999999999999997e-25  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_3089  transcriptional regulator HU subunit beta  57.78 
 
 
90 aa  114  3.9999999999999997e-25  Yersinia pseudotuberculosis IP 31758  Bacteria  unclonable  1.42002e-19  n/a   
 
 
-
 
NC_007912  Sde_1611  nucleoid protein HU beta subunit  57.78 
 
 
90 aa  113  7.999999999999999e-25  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.000132089  normal 
 
 
-
 
NC_011898  Ccel_3085  histone family protein DNA-binding protein  60 
 
 
91 aa  112  1.0000000000000001e-24  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.000115471  n/a   
 
 
-
 
NC_009901  Spea_3731  histone family protein DNA-binding protein  58.89 
 
 
90 aa  112  1.0000000000000001e-24  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0687  histone family protein DNA-binding protein  61.11 
 
 
91 aa  112  2.0000000000000002e-24  Thermoanaerobacter sp. X514  Bacteria  normal  0.105584  n/a   
 
 
-
 
NC_007484  Noc_1772  histone-like DNA-binding protein  55.56 
 
 
90 aa  112  2.0000000000000002e-24  Nitrosococcus oceani ATCC 19707  Bacteria  decreased coverage  0.000757515  n/a   
 
 
-
 
NC_007963  Csal_2043  histone-like DNA-binding protein  56.67 
 
 
90 aa  112  2.0000000000000002e-24  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_0600  histone family protein DNA-binding protein  60 
 
 
90 aa  111  3e-24  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_01420  nucleoid DNA-binding protein  56.67 
 
 
90 aa  111  4.0000000000000004e-24  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_012912  Dd1591_3065  transcriptional regulator HU subunit beta  56.67 
 
 
90 aa  111  4.0000000000000004e-24  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0430  histone family protein DNA-binding protein  58.89 
 
 
90 aa  111  4.0000000000000004e-24  Shewanella loihica PV-4  Bacteria  normal  0.719598  normal 
 
 
-
 
NC_009436  Ent638_0907  transcriptional regulator HU subunit beta  56.67 
 
 
90 aa  110  4.0000000000000004e-24  Enterobacter sp. 638  Bacteria  normal  0.0908162  normal 
 
 
-
 
NC_013456  VEA_004041  DNA-binding protein HU-beta  56.67 
 
 
90 aa  110  5e-24  Vibrio sp. Ex25  Bacteria  unclonable  0.000000015142  n/a   
 
 
-
 
NC_010506  Swoo_4353  histone family protein DNA-binding protein  58.89 
 
 
90 aa  110  5e-24  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  54.44 
 
 
90 aa  110  5e-24  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal 
 
 
-
 
CP001509  ECD_00392  HU, DNA-binding transcriptional regulator, beta subunit  56.67 
 
 
90 aa  110  6e-24  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3169  histone family protein DNA-binding protein  56.67 
 
 
90 aa  110  6e-24  Escherichia coli DH1  Bacteria  hitchhiker  0.000005828  n/a   
 
 
-
 
NC_011353  ECH74115_0526  transcriptional regulator HU subunit beta  56.67 
 
 
90 aa  110  6e-24  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.00026983  normal  0.698185 
 
 
-
 
NC_013411  GYMC61_0465  histone family protein DNA-binding protein  56.32 
 
 
90 aa  110  6e-24  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010468  EcolC_3192  transcriptional regulator HU subunit beta  56.67 
 
 
90 aa  110  6e-24  Escherichia coli ATCC 8739  Bacteria  normal  0.0216859  hitchhiker  0.00242013 
 
 
-
 
NC_010498  EcSMS35_0483  transcriptional regulator HU subunit beta  56.67 
 
 
90 aa  110  6e-24  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.000219434  normal 
 
 
-
 
NC_009801  EcE24377A_0476  transcriptional regulator HU subunit beta  56.67 
 
 
90 aa  110  6e-24  Escherichia coli E24377A  Bacteria  hitchhiker  0.000220916  n/a   
 
 
-
 
NC_012793  GWCH70_2154  histone family protein DNA-binding protein  56.32 
 
 
90 aa  110  6e-24  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000000552537  n/a   
 
 
-
 
NC_012892  B21_00396  hypothetical protein  56.67 
 
 
90 aa  110  6e-24  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A0517  transcriptional regulator HU subunit beta  56.67 
 
 
90 aa  110  6e-24  Escherichia coli HS  Bacteria  hitchhiker  0.0000000000441181  n/a   
 
 
-
 
NC_010658  SbBS512_E0363  transcriptional regulator HU subunit beta  56.67 
 
 
90 aa  110  6e-24  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.00017145  n/a   
 
 
-
 
NC_011312  VSAL_I0822  DNA-binding protein HU-beta  56.67 
 
 
98 aa  110  7.000000000000001e-24  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.172487  n/a   
 
 
-
 
NC_013421  Pecwa_3261  transcriptional regulator HU subunit beta  56.67 
 
 
90 aa  110  7.000000000000001e-24  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1051  transcriptional regulator HU subunit beta  56.67 
 
 
90 aa  110  7.000000000000001e-24  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.593082  n/a   
 
 
-
 
NC_002947  PP_2303  histone family protein DNA-binding protein  60 
 
 
90 aa  110  8.000000000000001e-24  Pseudomonas putida KT2440  Bacteria  normal  0.0561689  hitchhiker  0.000233767 
 
 
-
 
NC_009512  Pput_3466  histone family protein DNA-binding protein  60 
 
 
90 aa  110  8.000000000000001e-24  Pseudomonas putida F1  Bacteria  normal  0.360259  hitchhiker  0.000212777 
 
 
-
 
NC_009656  PSPA7_3493  DNA-binding protein HU  57.78 
 
 
90 aa  110  8.000000000000001e-24  Pseudomonas aeruginosa PA7  Bacteria  normal  0.175993  n/a   
 
 
-
 
NC_007947  Mfla_0016  nucleoid protein HU beta subunit  55.56 
 
 
90 aa  110  8.000000000000001e-24  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_008309  HS_1538  DNA-binding protein HU  56.67 
 
 
91 aa  110  8.000000000000001e-24  Haemophilus somnus 129PT  Bacteria  unclonable  0.0000000000676058  n/a   
 
 
-
 
NC_008463  PA14_41210  DNA-binding protein HU  57.78 
 
 
90 aa  110  8.000000000000001e-24  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0758892  normal  0.416187 
 
 
-
 
NC_012880  Dd703_2873  transcriptional regulator HU subunit beta  55.56 
 
 
90 aa  110  9e-24  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I2846  DNA-binding protein HU-alpha  57.78 
 
 
90 aa  109  1.0000000000000001e-23  Aliivibrio salmonicida LFI1238  Bacteria  decreased coverage  0.00368421  n/a   
 
 
-
 
NC_009439  Pmen_2053  nucleoid protein HU beta subunit  57.78 
 
 
90 aa  109  1.0000000000000001e-23  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.000457213  normal  0.0670315 
 
 
-
 
NC_009253  Dred_0115  histone family protein DNA-binding protein  60.92 
 
 
95 aa  109  1.0000000000000001e-23  Desulfotomaculum reducens MI-1  Bacteria  normal  0.552761  n/a   
 
 
-
 
NC_008709  Ping_1468  DNA-binding protein HU beta subunit  57.78 
 
 
91 aa  109  1.0000000000000001e-23  Psychromonas ingrahamii 37  Bacteria  normal  0.961834  normal  0.643607 
 
 
-
 
NC_009783  VIBHAR_00213  DNA-binding protein  58.89 
 
 
101 aa  109  1.0000000000000001e-23  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011094  SeSA_A0510  transcriptional regulator HU subunit beta  55.56 
 
 
90 aa  108  2.0000000000000002e-23  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0507646  normal 
 
 
-
 
NC_011205  SeD_A0493  transcriptional regulator HU subunit beta  55.56 
 
 
90 aa  108  2.0000000000000002e-23  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.107938  normal 
 
 
-
 
NC_011083  SeHA_C0554  transcriptional regulator HU subunit beta  55.56 
 
 
90 aa  108  2.0000000000000002e-23  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  hitchhiker  0.00736621  normal 
 
 
-
 
NC_011080  SNSL254_A0500  transcriptional regulator HU subunit beta  55.56 
 
 
90 aa  108  2.0000000000000002e-23  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.332585  normal  0.0268714 
 
 
-
 
NC_011149  SeAg_B0491  transcriptional regulator HU subunit beta  55.56 
 
 
90 aa  108  2.0000000000000002e-23  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0126716  n/a   
 
 
-
 
NC_009012  Cthe_2657  nucleoid protein Hbs  58.89 
 
 
91 aa  108  2.0000000000000002e-23  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.000194133  n/a   
 
 
-
 
NC_010322  PputGB1_1905  histone family protein DNA-binding protein  58.89 
 
 
90 aa  108  2.0000000000000002e-23  Pseudomonas putida GB-1  Bacteria  normal  0.173408  hitchhiker  0.000216257 
 
 
-
 
NC_008228  Patl_3133  histone-like DNA-binding protein  53.33 
 
 
90 aa  108  2.0000000000000002e-23  Pseudoalteromonas atlantica T6c  Bacteria  unclonable  0.0000000045924  n/a   
 
 
-
 
NC_013171  Apre_0964  histone family protein DNA-binding protein  59.34 
 
 
92 aa  108  2.0000000000000002e-23  Anaerococcus prevotii DSM 20548  Bacteria  decreased coverage  0.00000000994236  n/a   
 
 
-
 
NC_012560  Avin_23600  histone-like DNA-binding protein  57.78 
 
 
90 aa  108  2.0000000000000002e-23  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_002182  DNA-binding protein HU-alpha  57.78 
 
 
90 aa  108  3e-23  Vibrio sp. Ex25  Bacteria  normal  0.131368  n/a   
 
 
-
 
NC_009140  SNSL254_pSN254_0022  DNA-binding protein HU  56.67 
 
 
90 aa  108  3e-23  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  hitchhiker  0.00102315  hitchhiker  0.000567997 
 
 
-
 
NC_012034  Athe_0648  histone family protein DNA-binding protein  57.47 
 
 
91 aa  108  3e-23  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.0000000000417185  n/a   
 
 
-
 
NC_002977  MCA0532  DNA-binding protein HU-beta  52.22 
 
 
90 aa  107  4.0000000000000004e-23  Methylococcus capsulatus str. Bath  Bacteria  decreased coverage  0.00043104  n/a   
 
 
-
 
NC_008345  Sfri_3532  histone family protein DNA-binding protein  57.78 
 
 
90 aa  107  4.0000000000000004e-23  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0600  histone family protein DNA-binding protein  58.89 
 
 
90 aa  107  4.0000000000000004e-23  Halorhodospira halophila SL1  Bacteria  normal  0.0791658  n/a   
 
 
-
 
NC_008752  Aave_1666  histone family protein DNA-binding protein  56.67 
 
 
90 aa  107  4.0000000000000004e-23  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_0075  histone family protein DNA-binding protein  57.47 
 
 
91 aa  107  6e-23  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0085  nucleoid protein Hbs  56.32 
 
 
91 aa  107  7.000000000000001e-23  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0539634  normal 
 
 
-
 
NC_009457  VC0395_A1509  DNA-binding protein HU-beta  54.44 
 
 
90 aa  106  8.000000000000001e-23  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000000000490467  n/a   
 
 
-
 
NC_009997  Sbal195_1630  histone family protein DNA-binding protein  54.44 
 
 
90 aa  106  1e-22  Shewanella baltica OS195  Bacteria  unclonable  0.0000000159632  normal 
 
 
-
 
NC_004347  SO_1797  HU family DNA-binding protein  54.44 
 
 
90 aa  106  1e-22  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010501  PputW619_1745  histone family protein DNA-binding protein  57.78 
 
 
90 aa  105  1e-22  Pseudomonas putida W619  Bacteria  normal  0.693876  hitchhiker  0.00044049 
 
 
-
 
NC_011663  Sbal223_2747  histone family protein DNA-binding protein  54.44 
 
 
90 aa  106  1e-22  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000000276504  normal  0.581764 
 
 
-
 
NC_009665  Shew185_1596  histone family protein DNA-binding protein  54.44 
 
 
90 aa  106  1e-22  Shewanella baltica OS185  Bacteria  unclonable  0.00000000000169185  n/a   
 
 
-
 
NC_008321  Shewmr4_2492  histone family protein DNA-binding protein  54.44 
 
 
90 aa  106  1e-22  Shewanella sp. MR-4  Bacteria  unclonable  0.000000000348442  normal  0.0842071 
 
 
-
 
NC_008322  Shewmr7_2560  histone family protein DNA-binding protein  54.44 
 
 
90 aa  106  1e-22  Shewanella sp. MR-7  Bacteria  unclonable  0.000000135506  normal  0.0536414 
 
 
-
 
NC_009052  Sbal_1607  histone family protein DNA-binding protein  54.44 
 
 
90 aa  106  1e-22  Shewanella baltica OS155  Bacteria  hitchhiker  0.0000000022491  n/a   
 
 
-
 
NC_009438  Sputcn32_1493  histone family protein DNA-binding protein  54.44 
 
 
90 aa  106  1e-22  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000000388309  n/a   
 
 
-
 
NC_009972  Haur_3398  histone family protein DNA-binding protein  56.98 
 
 
92 aa  105  2e-22  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.000223697  n/a   
 
 
-
 
NC_007404  Tbd_1674  histone-like DNA-binding protein  53.33 
 
 
90 aa  105  2e-22  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.171237 
 
 
-
 
NC_008577  Shewana3_2658  histone family protein DNA-binding protein  54.44 
 
 
90 aa  105  2e-22  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000180426  normal  0.730265 
 
 
-
 
NC_009832  Spro_1098  histone family protein DNA-binding protein  52.22 
 
 
101 aa  104  3e-22  Serratia proteamaculans 568  Bacteria  hitchhiker  0.00970005  hitchhiker  0.00000236625 
 
 
-
 
NC_007954  Sden_0658  histone-like DNA-binding protein  56.67 
 
 
90 aa  105  3e-22  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_02474  DNA-binding protein HU  52.22 
 
 
90 aa  105  3e-22  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1227  HU family DNA-binding protein  53.33 
 
 
90 aa  104  4e-22  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0000165625  normal 
 
 
-
 
NC_011830  Dhaf_0135  histone family protein DNA-binding protein  54.44 
 
 
91 aa  104  5e-22  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00267128  n/a   
 
 
-
 
NC_007794  Saro_1362  histone-like DNA-binding protein  56.67 
 
 
90 aa  104  5e-22  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.102123  n/a   
 
 
-
 
NC_009457  VC0395_A2650  DNA-binding protein HU  56.18 
 
 
90 aa  103  5e-22  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1873  HU family DNA-binding protein  55.56 
 
 
91 aa  103  6e-22  Colwellia psychrerythraea 34H  Bacteria  normal  0.972501  n/a   
 
 
-
 
NC_007413  Ava_1767  nucleoid protein Hbs  51.69 
 
 
94 aa  103  7e-22  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011777  BCAH820_B0184  DNA-binding protein HU 1  54.02 
 
 
90 aa  103  7e-22  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_012560  Avin_43920  histone-like DNA-binding protein  52.22 
 
 
90 aa  103  8e-22  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_3110  histone family protein DNA-binding protein  53.33 
 
 
90 aa  103  8e-22  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000105676  hitchhiker  0.00000299463 
 
 
-
 
NC_014248  Aazo_0318  histone family protein DNA-binding protein  51.69 
 
 
94 aa  103  9e-22  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_1560  histone family protein DNA-binding protein  51.72 
 
 
90 aa  102  1e-21  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.768925  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>