More than 300 homologs were found in PanDaTox collection
for query gene PputGB1_4027 on replicon NC_010322
Organism: Pseudomonas putida GB-1



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_4521  aerotaxis receptor, putative  96.55 
 
 
521 aa  1025    Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1648  aerotaxis receptor  70.8 
 
 
521 aa  728    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_3813  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  93.28 
 
 
521 aa  989    Pseudomonas putida W619  Bacteria  normal  0.629648  normal  0.0156802 
 
 
-
 
NC_009512  Pput_1390  methyl-accepting chemotaxis sensory transducer  97.12 
 
 
534 aa  1030    Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3735  PAS  69.29 
 
 
521 aa  717    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.065462 
 
 
-
 
NC_009439  Pmen_1800  methyl-accepting chemotaxis sensory transducer  70.15 
 
 
521 aa  724    Pseudomonas mendocina ymp  Bacteria  normal  0.258308  normal  0.504821 
 
 
-
 
NC_010322  PputGB1_4027  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  100 
 
 
521 aa  1058    Pseudomonas putida GB-1  Bacteria  normal  0.664053  normal  0.0821551 
 
 
-
 
NC_008463  PA14_44300  aerotaxis receptor Aer  49.81 
 
 
521 aa  492  9.999999999999999e-139  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1902  methyl-accepting chemotaxis sensory transducer  49.72 
 
 
521 aa  490  1e-137  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00326538  normal  0.948878 
 
 
-
 
NC_009512  Pput_3628  methyl-accepting chemotaxis sensory transducer  49.43 
 
 
521 aa  487  1e-136  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2111  aerotaxis receptor Aer-2  49.43 
 
 
521 aa  486  1e-136  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0317394 
 
 
-
 
NC_009656  PSPA7_3770  aerotaxis receptor Aer  49.81 
 
 
521 aa  487  1e-136  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1630  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  49.81 
 
 
521 aa  483  1e-135  Pseudomonas putida W619  Bacteria  normal  normal  0.814601 
 
 
-
 
NC_010322  PputGB1_1653  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  49.06 
 
 
521 aa  479  1e-134  Pseudomonas putida GB-1  Bacteria  normal  0.976535  normal  0.292811 
 
 
-
 
NC_007005  Psyr_3406  PAS  49.81 
 
 
521 aa  479  1e-134  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.387271  normal  0.671486 
 
 
-
 
NC_004578  PSPTO_2014  aerotaxis receptor  48.96 
 
 
521 aa  470  1.0000000000000001e-131  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_1833  chemotaxis sensory transducer, Pas/Pac sensor  48.87 
 
 
521 aa  471  1.0000000000000001e-131  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.884809  normal 
 
 
-
 
NC_009438  Sputcn32_3109  methyl-accepting chemotaxis sensory transducer  47.99 
 
 
522 aa  467  9.999999999999999e-131  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_1888  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  51.72 
 
 
521 aa  464  1e-129  Pseudomonas putida GB-1  Bacteria  normal  0.378373  normal 
 
 
-
 
NC_009512  Pput_3481  methyl-accepting chemotaxis sensory transducer  51.12 
 
 
521 aa  463  1e-129  Pseudomonas putida F1  Bacteria  normal  normal  0.41765 
 
 
-
 
NC_002947  PP_2257  aerotaxis receptor Aer-1  51.12 
 
 
521 aa  459  9.999999999999999e-129  Pseudomonas putida KT2440  Bacteria  normal  0.215452  normal  0.0215353 
 
 
-
 
NC_008740  Maqu_0262  methyl-accepting chemotaxis sensory transducer  47.59 
 
 
524 aa  446  1.0000000000000001e-124  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3595  methyl-accepting chemotaxis sensory transducer  44.11 
 
 
515 aa  432  1e-120  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1214  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  43.79 
 
 
527 aa  409  1e-113  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1324  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  42.78 
 
 
523 aa  389  1e-107  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.587106  n/a   
 
 
-
 
NC_011138  MADE_03783  Methyl-accepting chemotaxis protein (PAS/PAC and MSP doamins)  42.53 
 
 
527 aa  385  1e-105  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_0389  methyl-accepting chemotaxis sensory transducer  47.19 
 
 
419 aa  373  1e-102  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_0250  methyl-accepting chemotaxis protein  38.58 
 
 
518 aa  359  7e-98  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0580  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  40.42 
 
 
521 aa  349  8e-95  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0413099 
 
 
-
 
NC_009901  Spea_1860  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  37.12 
 
 
524 aa  349  8e-95  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4658  chemotaxis sensory transducer, Pas/Pac sensor  40.99 
 
 
529 aa  342  8e-93  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_4186  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  39.06 
 
 
526 aa  342  1e-92  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3447  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  39.19 
 
 
524 aa  341  1e-92  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0583  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  38.99 
 
 
524 aa  340  2.9999999999999998e-92  Shewanella sp. MR-4  Bacteria  normal  normal  0.344402 
 
 
-
 
NC_009439  Pmen_4451  methyl-accepting chemotaxis sensory transducer  41.9 
 
 
531 aa  338  9.999999999999999e-92  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_3294  methyl-accepting chemotaxis sensory transducer  39.6 
 
 
524 aa  337  2.9999999999999997e-91  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2690  methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor  37.19 
 
 
524 aa  335  1e-90  Shewanella sediminis HAW-EB3  Bacteria  normal  0.487789  normal 
 
 
-
 
NC_009665  Shew185_3782  methyl-accepting chemotaxis sensory transducer  39.72 
 
 
524 aa  335  1e-90  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_0582  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  38.4 
 
 
524 aa  333  4e-90  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_3908  methyl-accepting chemotaxis sensory transducer  37.88 
 
 
524 aa  333  5e-90  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0543  methyl-accepting chemotaxis sensory transducer  37.88 
 
 
524 aa  332  8e-90  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3725  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  37.88 
 
 
524 aa  332  8e-90  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2159  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  38.74 
 
 
523 aa  324  2e-87  Shewanella loihica PV-4  Bacteria  normal  0.416992  normal  0.881373 
 
 
-
 
NC_004347  SO_0584  methyl-accepting chemotaxis protein  37.2 
 
 
524 aa  324  3e-87  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009654  Mmwyl1_3460  methyl-accepting chemotaxis sensory transducer  35.33 
 
 
520 aa  322  9.999999999999999e-87  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1621  methyl-accepting chemotaxis protein  35.92 
 
 
513 aa  301  2e-80  Colwellia psychrerythraea 34H  Bacteria  normal  0.113175  n/a   
 
 
-
 
NC_011663  Sbal223_3073  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.86 
 
 
522 aa  301  3e-80  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.000000000166485 
 
 
-
 
NC_009665  Shew185_1282  methyl-accepting chemotaxis sensory transducer  36.91 
 
 
522 aa  300  3e-80  Shewanella baltica OS185  Bacteria  normal  0.13527  n/a   
 
 
-
 
NC_009052  Sbal_1238  methyl-accepting chemotaxis sensory transducer  36.72 
 
 
522 aa  299  9e-80  Shewanella baltica OS155  Bacteria  normal  0.0615962  n/a   
 
 
-
 
NC_004347  SO_3404  methyl-accepting chemotaxis protein  36.67 
 
 
522 aa  298  1e-79  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_2726  methyl-accepting chemotaxis sensory transducer  36.94 
 
 
538 aa  298  2e-79  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1317  methyl-accepting chemotaxis sensory transducer  36.67 
 
 
522 aa  296  9e-79  Shewanella baltica OS195  Bacteria  normal  normal  0.0176898 
 
 
-
 
NC_013457  VEA_001512  aerotaxis sensor receptor protein  34.97 
 
 
516 aa  294  3e-78  Vibrio sp. Ex25  Bacteria  normal  0.961146  n/a   
 
 
-
 
NC_008789  Hhal_0974  methyl-accepting chemotaxis sensory transducer  37.48 
 
 
532 aa  294  3e-78  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_1220  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.52 
 
 
522 aa  292  1e-77  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_1987  methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor  34.76 
 
 
518 aa  289  8e-77  Shewanella sediminis HAW-EB3  Bacteria  normal  0.185607  normal  0.0170041 
 
 
-
 
NC_008345  Sfri_3219  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.49 
 
 
516 aa  289  1e-76  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.1353  n/a   
 
 
-
 
NC_008577  Shewana3_1150  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.33 
 
 
522 aa  287  2.9999999999999996e-76  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_1149  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.33 
 
 
522 aa  287  2.9999999999999996e-76  Shewanella sp. MR-4  Bacteria  normal  0.737349  normal 
 
 
-
 
NC_003910  CPS_4927  methyl-accepting chemotaxis protein/sensory box protein  33.78 
 
 
511 aa  286  5e-76  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_0995  putative methyl-accepting chemotaxis sensory transducer  37.17 
 
 
517 aa  286  5e-76  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_3270  methyl-accepting chemotaxis sensory transducer  35.42 
 
 
532 aa  281  3e-74  Marinobacter aquaeolei VT8  Bacteria  normal  0.415489  n/a   
 
 
-
 
NC_010623  Bphy_4269  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.18 
 
 
556 aa  281  3e-74  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B2984  methyl-accepting chemotaxis sensory transducer, Pas/Pac sensor  36.19 
 
 
565 aa  278  2e-73  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_0532  putative methyl-accepting chemotaxis sensory transducer  36.28 
 
 
523 aa  275  1.0000000000000001e-72  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.0374128 
 
 
-
 
NC_004347  SO_1385  methyl-accepting chemotaxis protein  36.42 
 
 
520 aa  275  2.0000000000000002e-72  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_0337  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  32.7 
 
 
517 aa  275  2.0000000000000002e-72  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1294  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.21 
 
 
575 aa  272  1e-71  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00873235 
 
 
-
 
NC_010002  Daci_5286  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.99 
 
 
519 aa  270  4e-71  Delftia acidovorans SPH-1  Bacteria  normal  0.982796  normal 
 
 
-
 
NC_003296  RSp1224  aerotaxis sensor receptor transmembrane protein  35.83 
 
 
514 aa  269  8.999999999999999e-71  Ralstonia solanacearum GMI1000  Bacteria  normal  0.229455  normal  0.54431 
 
 
-
 
NC_008577  Shewana3_2987  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.42 
 
 
522 aa  269  8.999999999999999e-71  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1933  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  32.9 
 
 
598 aa  269  8.999999999999999e-71  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1520  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.72 
 
 
543 aa  268  1e-70  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.112151 
 
 
-
 
NC_008321  Shewmr4_2808  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.22 
 
 
522 aa  268  1e-70  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_2891  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.22 
 
 
522 aa  268  1e-70  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2113  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.45 
 
 
550 aa  268  2e-70  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_1125  methyl-accepting chemotaxis sensory transducer  35.69 
 
 
532 aa  263  4.999999999999999e-69  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I0618  methyl-accepting chemotaxis protein  34.62 
 
 
583 aa  262  8.999999999999999e-69  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1618  methyl-accepting chemotaxis protein  34.92 
 
 
526 aa  261  1e-68  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2920  aerotaxis sensor receptor  36.83 
 
 
549 aa  262  1e-68  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A2845  methyl-accepting chemotaxis protein  34.55 
 
 
526 aa  262  1e-68  Yersinia pestis Angola  Bacteria  normal  normal  0.208852 
 
 
-
 
NC_010465  YPK_1726  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.55 
 
 
526 aa  262  1e-68  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_3023  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.23 
 
 
514 aa  261  2e-68  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2247  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  32.5 
 
 
511 aa  261  2e-68  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_2648  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  33.85 
 
 
520 aa  260  4e-68  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_2406  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.34 
 
 
566 aa  260  4e-68  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6942  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.83 
 
 
566 aa  259  6e-68  Burkholderia phytofirmans PsJN  Bacteria  normal  0.819674  normal 
 
 
-
 
NC_011353  ECH74115_4385  aerotaxis receptor  34.77 
 
 
506 aa  256  9e-67  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.472426  normal 
 
 
-
 
NC_010468  EcolC_0628  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.58 
 
 
506 aa  255  1.0000000000000001e-66  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A2405  methyl-accepting chemotaxis sensory transducer, Pas/Pac sensor  33.33 
 
 
514 aa  255  1.0000000000000001e-66  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.0000957151  normal  0.313744 
 
 
-
 
NC_009092  Shew_2577  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  33.53 
 
 
524 aa  255  1.0000000000000001e-66  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_02941  fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component  34.2 
 
 
506 aa  254  2.0000000000000002e-66  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0629  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.2 
 
 
506 aa  254  2.0000000000000002e-66  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_3538  aerotaxis receptor  34.58 
 
 
506 aa  254  2.0000000000000002e-66  Escherichia coli E24377A  Bacteria  normal  0.840702  n/a   
 
 
-
 
NC_009800  EcHS_A3253  aerotaxis receptor  34.2 
 
 
506 aa  254  2.0000000000000002e-66  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E3508  aerotaxis receptor  34.2 
 
 
506 aa  254  2.0000000000000002e-66  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_1196  methyl-accepting chemotaxis sensory transducer  33.84 
 
 
522 aa  255  2.0000000000000002e-66  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_3366  aerotaxis receptor  34.77 
 
 
506 aa  255  2.0000000000000002e-66  Escherichia coli SMS-3-5  Bacteria  normal  0.775088  normal 
 
 
-
 
NC_012892  B21_02891  hypothetical protein  34.2 
 
 
506 aa  254  2.0000000000000002e-66  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0674  PAS  34.66 
 
 
544 aa  254  3e-66  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>