More than 300 homologs were found in PanDaTox collection
for query gene PputGB1_3157 on replicon NC_010322
Organism: Pseudomonas putida GB-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010322  PputGB1_3157  acyl-CoA dehydrogenase type 2  100 
 
 
407 aa  827    Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_007509  Bcep18194_C7712  Acyl-CoA dehydrogenase, central region  63.75 
 
 
425 aa  525  1e-148  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009078  BURPS1106A_A0928  acyl-CoA dehydrogenase domain-containing protein  58.78 
 
 
412 aa  466  9.999999999999999e-131  Burkholderia pseudomallei 1106a  Bacteria  normal  0.0398526  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2254  acyl-CoA dehydrogenase domain-containing protein  58.78 
 
 
451 aa  466  9.999999999999999e-131  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A1523  acyl-CoA dehydrogenase domain-containing protein  58.52 
 
 
412 aa  464  1e-129  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA1148  acyl-CoA dehydrogenase domain-containing protein  58.52 
 
 
412 aa  464  1e-129  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II1742  acyl-CoA dehydrogenase domain-containing protein  58.02 
 
 
412 aa  464  1e-129  Burkholderia thailandensis E264  Bacteria  normal  0.469598  n/a   
 
 
-
 
NC_008835  BMA10229_0091  acyl-CoA dehydrogenase domain-containing protein  58.52 
 
 
412 aa  464  1e-129  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A1013  acyl-CoA dehydrogenase domain-containing protein  58.52 
 
 
412 aa  464  1e-129  Burkholderia pseudomallei 668  Bacteria  normal  0.153934  n/a   
 
 
-
 
NC_010512  Bcenmc03_6338  acyl-CoA dehydrogenase type 2  56.93 
 
 
412 aa  459  9.999999999999999e-129  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008062  Bcen_6515  Acyl-CoA dehydrogenase, type 2-like  56.93 
 
 
412 aa  459  9.999999999999999e-129  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008544  Bcen2424_6749  acyl-CoA dehydrogenase type 2  56.93 
 
 
412 aa  459  9.999999999999999e-129  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.144379 
 
 
-
 
NC_009656  PSPA7_2934  hypothetical protein  59.9 
 
 
411 aa  447  1.0000000000000001e-124  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_34550  hypothetical protein  59.9 
 
 
411 aa  447  1.0000000000000001e-124  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.0698049 
 
 
-
 
NC_012560  Avin_43650  Acyl-CoA dehydrogenase  57.03 
 
 
414 aa  442  1e-123  Azotobacter vinelandii DJ  Bacteria  normal  0.0618443  n/a   
 
 
-
 
NC_011894  Mnod_5014  Acyl-CoA dehydrogenase type 2 domain protein  55.5 
 
 
415 aa  442  1e-123  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_0877  acyl-CoA dehydrogenase type 2  56.57 
 
 
429 aa  437  1e-121  Acidovorax citrulli AAC00-1  Bacteria  normal  0.485998  normal  0.261313 
 
 
-
 
NC_008463  PA14_34300  DszC family monooxygenase  58.97 
 
 
405 aa  432  1e-120  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.803163  normal  0.0145718 
 
 
-
 
NC_009485  BBta_2550  putative acyl-CoA dehydrogenase  55.44 
 
 
413 aa  428  1e-119  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.405659  normal  0.31936 
 
 
-
 
NC_009656  PSPA7_2915  hypothetical protein  58.46 
 
 
405 aa  429  1e-119  Pseudomonas aeruginosa PA7  Bacteria  normal  0.281087  n/a   
 
 
-
 
NC_007509  Bcep18194_C7499  Acyl-CoA dehydrogenase  58.45 
 
 
412 aa  427  1e-118  Burkholderia sp. 383  Bacteria  normal  0.140498  normal  0.395305 
 
 
-
 
NC_009439  Pmen_2362  acyl-CoA dehydrogenase type 2  54.87 
 
 
399 aa  427  1e-118  Pseudomonas mendocina ymp  Bacteria  decreased coverage  0.00266653  hitchhiker  0.00112869 
 
 
-
 
NC_009485  BBta_2551  putative acyl-CoA dehydrogenase  52.91 
 
 
416 aa  417  9.999999999999999e-116  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.285917  normal  0.436959 
 
 
-
 
NC_010501  PputW619_4989  acyl-CoA dehydrogenase type 2  56.36 
 
 
393 aa  416  9.999999999999999e-116  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_0554  acyl-CoA dehydrogenase type 2  52.04 
 
 
417 aa  416  9.999999999999999e-116  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0223  DszC family monooxygenase  55.18 
 
 
406 aa  412  1e-114  Pseudomonas putida KT2440  Bacteria  decreased coverage  0.00885592  hitchhiker  0.00679283 
 
 
-
 
NC_007492  Pfl01_0240  Acyl-CoA dehydrogenase-like  52.43 
 
 
413 aa  411  1e-114  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2755  hypothetical protein  51.41 
 
 
414 aa  410  1e-113  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0247  acyl-CoA dehydrogenase type 2  55.18 
 
 
393 aa  409  1e-113  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_5184  acyl-CoA dehydrogenase family protein  53.45 
 
 
440 aa  408  1e-113  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.995233  n/a   
 
 
-
 
NC_011757  Mchl_3957  Acyl-CoA dehydrogenase type 2 domain  57.11 
 
 
419 aa  409  1e-113  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0790683  normal  0.786977 
 
 
-
 
NC_009512  Pput_2998  acyl-CoA dehydrogenase type 2  51.66 
 
 
410 aa  408  1e-113  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_31480  Acyl-CoA dehydrogenase family protein  51.95 
 
 
424 aa  409  1e-113  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_0238  acyl-CoA dehydrogenase type 2  55.32 
 
 
393 aa  411  1e-113  Pseudomonas putida F1  Bacteria  normal  0.679999  normal  0.247147 
 
 
-
 
NC_010172  Mext_3664  acyl-CoA dehydrogenase type 2  56.85 
 
 
419 aa  406  1.0000000000000001e-112  Methylobacterium extorquens PA1  Bacteria  normal  0.952309  normal 
 
 
-
 
NC_004578  PSPTO_2985  acyl-CoA dehydrogenase family protein  50.64 
 
 
426 aa  406  1.0000000000000001e-112  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.280885  n/a   
 
 
-
 
NC_010581  Bind_2054  acyl-CoA dehydrogenase type 2  51.54 
 
 
415 aa  408  1.0000000000000001e-112  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.876427  normal 
 
 
-
 
NC_011988  Avi_5155  acyl-CoA dehydrogenase  49.87 
 
 
422 aa  405  1.0000000000000001e-112  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011371  Rleg2_6565  Acyl-CoA dehydrogenase type 2 domain  54.36 
 
 
405 aa  402  1e-111  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.191589  normal  0.316976 
 
 
-
 
NC_010725  Mpop_3951  Acyl-CoA dehydrogenase type 2 domain  55.75 
 
 
419 aa  403  1e-111  Methylobacterium populi BJ001  Bacteria  normal  normal  0.865313 
 
 
-
 
NC_002947  PP_0224  DszC family monooxygenase  53.71 
 
 
413 aa  399  9.999999999999999e-111  Pseudomonas putida KT2440  Bacteria  normal  0.88641  hitchhiker  0.00688358 
 
 
-
 
NC_004578  PSPTO_5185  acyl-CoA dehydrogenase family protein  53.15 
 
 
401 aa  401  9.999999999999999e-111  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0353  Acyl-CoA dehydrogenase, C-terminal  52.64 
 
 
401 aa  400  9.999999999999999e-111  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.758482 
 
 
-
 
NC_007005  Psyr_0354  Acyl-CoA dehydrogenase, C-terminal  52.66 
 
 
440 aa  401  9.999999999999999e-111  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_0024  acyl-CoA dehydrogenase type 2  57.83 
 
 
418 aa  401  9.999999999999999e-111  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.641341 
 
 
-
 
NC_009512  Pput_0239  acyl-CoA dehydrogenase type 2  53.96 
 
 
413 aa  399  9.999999999999999e-111  Pseudomonas putida F1  Bacteria  normal  normal  0.238794 
 
 
-
 
NC_010581  Bind_2053  acyl-CoA dehydrogenase type 2  52.3 
 
 
403 aa  399  9.999999999999999e-111  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0248  acyl-CoA dehydrogenase type 2  54.22 
 
 
413 aa  401  9.999999999999999e-111  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0239  Acyl-CoA dehydrogenase-like  54.17 
 
 
397 aa  397  1e-109  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_31490  Acyl-CoA dehydrogenase family protein  56.07 
 
 
402 aa  397  1e-109  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B1544  hypothetical protein  54.52 
 
 
420 aa  396  1e-109  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.86549 
 
 
-
 
NC_009485  BBta_2549  putative acyl-CoA dehydrogenase  50.62 
 
 
434 aa  392  1e-108  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.354355  normal  0.569351 
 
 
-
 
NC_010501  PputW619_4988  acyl-CoA dehydrogenase type 2  53.2 
 
 
413 aa  394  1e-108  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_2916  hypothetical protein  53.79 
 
 
411 aa  392  1e-108  Pseudomonas aeruginosa PA7  Bacteria  normal  0.548504  n/a   
 
 
-
 
NC_012852  Rleg_6150  Acyl-CoA dehydrogenase type 2 domain protein  54.36 
 
 
405 aa  389  1e-107  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  hitchhiker  0.00426369  hitchhiker  0.00144914 
 
 
-
 
NC_008463  PA14_34320  DszC family monooxygenase  53.28 
 
 
411 aa  390  1e-107  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.404084  normal  0.0301883 
 
 
-
 
NC_011988  Avi_5156  acyl-CoA dehydrogenase  49.75 
 
 
420 aa  388  1e-106  Agrobacterium vitis S4  Bacteria  normal  0.0718281  n/a   
 
 
-
 
NC_013739  Cwoe_2677  Acyl-CoA dehydrogenase type 2 domain protein  50.64 
 
 
433 aa  378  1e-103  Conexibacter woesei DSM 14684  Bacteria  normal  0.3001  normal  0.883174 
 
 
-
 
NC_010002  Daci_1778  acyl-CoA dehydrogenase type 2  52.93 
 
 
425 aa  373  1e-102  Delftia acidovorans SPH-1  Bacteria  normal  0.251662  normal  0.768767 
 
 
-
 
NC_012791  Vapar_1903  Acyl-CoA dehydrogenase type 2 domain protein  52.82 
 
 
417 aa  371  1e-101  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0930  acyl-CoA dehydrogenase domain-containing protein  53.31 
 
 
404 aa  365  1e-100  Burkholderia pseudomallei 1106a  Bacteria  normal  0.0316102  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2255  acyl-CoA dehydrogenase domain-containing protein  53.31 
 
 
400 aa  365  1e-100  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A1015  acyl-CoA dehydrogenase domain-containing protein  53.04 
 
 
404 aa  363  2e-99  Burkholderia pseudomallei 668  Bacteria  normal  0.0155117  n/a   
 
 
-
 
NC_013510  Tcur_1370  Acyl-CoA dehydrogenase type 2 domain protein  50.37 
 
 
413 aa  364  2e-99  Thermomonospora curvata DSM 43183  Bacteria  normal  0.478253  n/a   
 
 
-
 
NC_006349  BMAA1147  acyl-CoA dehydrogenase domain-containing protein  53.04 
 
 
400 aa  362  4e-99  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0092  acyl-CoA dehydrogenase domain-containing protein  53.04 
 
 
404 aa  362  5.0000000000000005e-99  Burkholderia mallei NCTC 10229  Bacteria  normal  0.362932  n/a   
 
 
-
 
NC_009079  BMA10247_A1521  acyl-CoA dehydrogenase domain-containing protein  53.04 
 
 
404 aa  362  5.0000000000000005e-99  Burkholderia mallei NCTC 10247  Bacteria  normal  0.954011  n/a   
 
 
-
 
NC_008752  Aave_2008  acyl-CoA dehydrogenase type 2  54.08 
 
 
425 aa  357  1.9999999999999998e-97  Acidovorax citrulli AAC00-1  Bacteria  normal  0.200025  hitchhiker  0.00322208 
 
 
-
 
NC_007952  Bxe_B1545  hypothetical protein  52.55 
 
 
416 aa  356  3.9999999999999996e-97  Burkholderia xenovorans LB400  Bacteria  normal  0.828601  normal  0.5845 
 
 
-
 
NC_009485  BBta_2572  putative acyl-CoA dehydrogenase  51.29 
 
 
393 aa  343  2.9999999999999997e-93  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.275239 
 
 
-
 
NC_009439  Pmen_2361  acyl-CoA dehydrogenase type 2  52.33 
 
 
412 aa  342  5.999999999999999e-93  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00969514  hitchhiker  0.0011963 
 
 
-
 
NC_008752  Aave_2009  acyl-CoA dehydrogenase type 2  48.91 
 
 
411 aa  341  1e-92  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0963467  hitchhiker  0.00351271 
 
 
-
 
NC_004578  PSPTO_2439  acyl-CoA dehydrogenase family protein  49.09 
 
 
403 aa  341  2e-92  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.267155  n/a   
 
 
-
 
NC_011988  Avi_6061  acyl-CoA dehydrogenase  50 
 
 
326 aa  338  7e-92  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1779  acyl-CoA dehydrogenase type 2  47.86 
 
 
430 aa  338  9.999999999999999e-92  Delftia acidovorans SPH-1  Bacteria  normal  0.392008  normal 
 
 
-
 
NC_012880  Dd703_3100  Acyl-CoA dehydrogenase type 2 domain protein  42.04 
 
 
392 aa  333  4e-90  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2440  acyl-CoA dehydrogenase family protein  47.62 
 
 
395 aa  328  2.0000000000000001e-88  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0806323  n/a   
 
 
-
 
NC_009485  BBta_2571  putative acyl-CoA dehydrogenase  47.57 
 
 
420 aa  312  5.999999999999999e-84  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.517153  normal  0.280114 
 
 
-
 
NC_014158  Tpau_1370  Acyl-CoA dehydrogenase type 2 domain protein  47.27 
 
 
395 aa  308  9e-83  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4516  acyl-CoA dehydrogenase type 2  45.22 
 
 
395 aa  308  1.0000000000000001e-82  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.130533 
 
 
-
 
NC_010505  Mrad2831_4228  acyl-CoA dehydrogenase type 2  51.1 
 
 
412 aa  298  1e-79  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0568392 
 
 
-
 
NC_013441  Gbro_1581  Acyl-CoA dehydrogenase type 2 domain protein  44.47 
 
 
413 aa  287  2e-76  Gordonia bronchialis DSM 43247  Bacteria  normal  0.217261  n/a   
 
 
-
 
NC_010505  Mrad2831_4227  acyl-CoA dehydrogenase type 2  49.62 
 
 
418 aa  286  4e-76  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0340079 
 
 
-
 
NC_007333  Tfu_1495  hypothetical protein  46.87 
 
 
403 aa  261  1e-68  Thermobifida fusca YX  Bacteria  normal  0.0879599  n/a   
 
 
-
 
NC_009077  Mjls_0895  acyl-CoA dehydrogenase type 2  44.72 
 
 
398 aa  260  3e-68  Mycobacterium sp. JLS  Bacteria  normal  normal  0.0424541 
 
 
-
 
NC_008146  Mmcs_0889  Acyl-CoA dehydrogenase, type 2-like protein  44.19 
 
 
398 aa  260  3e-68  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0906  acyl-CoA dehydrogenase type 2  44.19 
 
 
398 aa  260  3e-68  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_3342  acyl-CoA dehydrogenase type 2  38.13 
 
 
410 aa  239  5.999999999999999e-62  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3110  Acyl-CoA dehydrogenase type 2 domain  37.47 
 
 
375 aa  218  1e-55  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.464185 
 
 
-
 
NC_008726  Mvan_3173  acyl-CoA dehydrogenase type 2  37.4 
 
 
415 aa  215  9e-55  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.203103  normal  0.0489615 
 
 
-
 
NC_013510  Tcur_1377  acyl-CoA dehydrogenase domain protein  36.56 
 
 
409 aa  208  1e-52  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0469267  n/a   
 
 
-
 
NC_009077  Mjls_3501  acyl-CoA dehydrogenase type 2  37.95 
 
 
411 aa  197  2.0000000000000003e-49  Mycobacterium sp. JLS  Bacteria  normal  0.102842  normal  0.83486 
 
 
-
 
NC_008146  Mmcs_3488  Acyl-CoA dehydrogenase, type 2-like protein  37.95 
 
 
411 aa  197  2.0000000000000003e-49  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_3551  acyl-CoA dehydrogenase type 2  37.95 
 
 
411 aa  197  2.0000000000000003e-49  Mycobacterium sp. KMS  Bacteria  normal  0.058709  normal 
 
 
-
 
NC_007974  Rmet_3858  putative acyl-CoA dehydrogenase  35.05 
 
 
451 aa  197  3e-49  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.99682 
 
 
-
 
NC_012850  Rleg_3368  Acyl-CoA dehydrogenase type 2 domain protein  34.36 
 
 
375 aa  197  3e-49  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0794016 
 
 
-
 
NC_008781  Pnap_0557  acyl-CoA dehydrogenase type 2  33.16 
 
 
395 aa  190  2.9999999999999997e-47  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.692519  normal 
 
 
-
 
NC_011981  Avi_7189  acyl-CoA dehydrogenase  32.11 
 
 
412 aa  190  2.9999999999999997e-47  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007509  Bcep18194_C7715  Acyl-CoA dehydrogenase-like  35.42 
 
 
448 aa  190  4e-47  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_4334  acyl-CoA dehydrogenase type 2  33.16 
 
 
409 aa  184  3e-45  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
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