More than 300 homologs were found in PanDaTox collection
for query gene Ppha_0994 on replicon NC_011060
Organism: Pelodictyon phaeoclathratiforme BU-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011060  Ppha_0994  two component transcriptional regulator, winged helix family  100 
 
 
227 aa  462  1e-129  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.337893  n/a   
 
 
-
 
NC_010803  Clim_1291  two component transcriptional regulator, winged helix family  79.64 
 
 
222 aa  385  1e-106  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1205  two component transcriptional regulator  77.83 
 
 
222 aa  379  1e-104  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_007514  Cag_0440  two component transcriptional regulator  78.67 
 
 
225 aa  375  1e-103  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.747409  n/a   
 
 
-
 
NC_007512  Plut_1212  two component transcriptional regulator  69.96 
 
 
232 aa  341  5.999999999999999e-93  Chlorobium luteolum DSM 273  Bacteria  normal  0.0899901  normal  0.616229 
 
 
-
 
NC_010831  Cphamn1_0990  two component transcriptional regulator, winged helix family  67.27 
 
 
222 aa  322  3e-87  Chlorobium phaeobacteroides BS1  Bacteria  hitchhiker  0.000957791  decreased coverage  0.0000715536 
 
 
-
 
NC_009483  Gura_4293  two component transcriptional regulator  48.66 
 
 
224 aa  232  3e-60  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000934276  n/a   
 
 
-
 
NC_012918  GM21_0227  two component transcriptional regulator, winged helix family  47.77 
 
 
224 aa  232  4.0000000000000004e-60  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007517  Gmet_3383  two component transcriptional regulator  47.32 
 
 
224 aa  231  6e-60  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0451  DNA-binding response regulator  46.88 
 
 
224 aa  231  7.000000000000001e-60  Geobacter sulfurreducens PCA  Bacteria  normal  0.313098  n/a   
 
 
-
 
NC_011146  Gbem_0243  two component transcriptional regulator, winged helix family  47.32 
 
 
224 aa  228  8e-59  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.000226454  n/a   
 
 
-
 
NC_007498  Pcar_3081  two component signal transduction response regulator  48.43 
 
 
223 aa  225  5.0000000000000005e-58  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2957  two component transcriptional regulator  47.56 
 
 
223 aa  222  3e-57  Pelobacter propionicus DSM 2379  Bacteria  unclonable  0.000000000406961  n/a   
 
 
-
 
NC_009441  Fjoh_2880  two component transcriptional regulator  47.06 
 
 
220 aa  216  2e-55  Flavobacterium johnsoniae UW101  Bacteria  normal  0.344114  n/a   
 
 
-
 
NC_008554  Sfum_2007  two component transcriptional regulator  49.77 
 
 
223 aa  214  9e-55  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_3423  response regulator receiver protein  47.71 
 
 
224 aa  211  5.999999999999999e-54  Streptosporangium roseum DSM 43021  Bacteria  normal  0.699539  normal  0.107362 
 
 
-
 
NC_007644  Moth_1478  two component transcriptional regulator  48.43 
 
 
240 aa  210  1e-53  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.0000111909  normal 
 
 
-
 
NC_011729  PCC7424_2242  two component transcriptional regulator, winged helix family  47.27 
 
 
224 aa  209  3e-53  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.415885 
 
 
-
 
NC_009483  Gura_1986  two component heavy metal response transcriptional regulator  47.75 
 
 
223 aa  208  5e-53  Geobacter uraniireducens Rf4  Bacteria  normal  0.0566795  n/a   
 
 
-
 
NC_010001  Cphy_0015  two component transcriptional regulator  47.14 
 
 
228 aa  208  7e-53  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_3411  two component transcriptional regulator, winged helix family  46.82 
 
 
224 aa  207  1e-52  Cyanothece sp. PCC 7425  Bacteria  normal  0.591115  normal 
 
 
-
 
NC_009523  RoseRS_2290  two component transcriptional regulator  47.51 
 
 
224 aa  206  2e-52  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_0615  two component transcriptional regulator  46.36 
 
 
228 aa  206  2e-52  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0841359  normal  0.719107 
 
 
-
 
NC_009767  Rcas_2487  two component transcriptional regulator  47.06 
 
 
224 aa  204  1e-51  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.431556  normal 
 
 
-
 
NC_014248  Aazo_0389  winged helix family two component transcriptional regulator  47.06 
 
 
224 aa  204  1e-51  'Nostoc azollae' 0708  Bacteria  normal  0.667669  n/a   
 
 
-
 
NC_011831  Cagg_1351  two component transcriptional regulator, winged helix family  46.4 
 
 
225 aa  203  2e-51  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00188361  unclonable  0.0000000206018 
 
 
-
 
NC_013525  Tter_1435  two component transcriptional regulator, winged helix family  47.14 
 
 
233 aa  203  2e-51  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013037  Dfer_2762  two component transcriptional regulator, winged helix family  47.77 
 
 
225 aa  202  3e-51  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_4301  two component transcriptional regulator  43.56 
 
 
230 aa  202  3e-51  Mycobacterium sp. MCS  Bacteria  normal  0.681825  n/a   
 
 
-
 
NC_008705  Mkms_4387  two component transcriptional regulator  43.56 
 
 
230 aa  202  3e-51  Mycobacterium sp. KMS  Bacteria  normal  0.0316317  normal 
 
 
-
 
NC_009077  Mjls_4681  two component transcriptional regulator  43.56 
 
 
230 aa  202  3e-51  Mycobacterium sp. JLS  Bacteria  normal  normal  0.354926 
 
 
-
 
NC_012034  Athe_0280  two component transcriptional regulator, winged helix family  45.54 
 
 
225 aa  201  5e-51  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_1873  two component transcriptional regulator  44.09 
 
 
226 aa  201  5e-51  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_0998  two component transcriptional regulator, winged helix family  42.99 
 
 
223 aa  201  8e-51  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1815  two component heavy metal response transcriptional regulator  45.45 
 
 
224 aa  201  9e-51  Ralstonia eutropha JMP134  Bacteria  normal  0.275759  n/a   
 
 
-
 
NC_013730  Slin_2929  two component transcriptional regulator, winged helix family  43.36 
 
 
230 aa  200  9.999999999999999e-51  Spirosoma linguale DSM 74  Bacteria  normal  0.0551332  normal 
 
 
-
 
NC_008607  Ppro_3752  two component transcriptional regulator  46.19 
 
 
224 aa  200  9.999999999999999e-51  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.000783534  n/a   
 
 
-
 
NC_008060  Bcen_1505  two component heavy metal response transcriptional regulator  45.98 
 
 
225 aa  199  1.9999999999999998e-50  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.228186  n/a   
 
 
-
 
NC_008544  Bcen2424_6324  two component heavy metal response transcriptional regulator  45.98 
 
 
225 aa  199  1.9999999999999998e-50  Burkholderia cenocepacia HI2424  Bacteria  normal  0.313253  normal 
 
 
-
 
NC_010512  Bcenmc03_6987  two component heavy metal response transcriptional regulator  45.98 
 
 
225 aa  199  1.9999999999999998e-50  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.67799  normal  0.586494 
 
 
-
 
NC_007777  Francci3_2401  two component transcriptional regulator  43.5 
 
 
283 aa  199  3e-50  Frankia sp. CcI3  Bacteria  normal  0.0476592  normal  0.0197415 
 
 
-
 
NC_009565  TBFG_10999  two component response transcriptional regulatory protein MprA  43.11 
 
 
230 aa  199  3e-50  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00000000188235  normal  0.671639 
 
 
-
 
NC_008726  Mvan_4844  two component transcriptional regulator  42.04 
 
 
231 aa  199  3.9999999999999996e-50  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.312171 
 
 
-
 
NC_013037  Dfer_0274  two component transcriptional regulator, winged helix family  44.25 
 
 
232 aa  198  5e-50  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.701823  normal  0.83989 
 
 
-
 
NC_009338  Mflv_1887  two component transcriptional regulator  42.92 
 
 
231 aa  198  5e-50  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.882564  normal  0.344123 
 
 
-
 
NC_009972  Haur_2799  two component transcriptional regulator  44.84 
 
 
236 aa  198  6e-50  Herpetosiphon aurantiacus ATCC 23779  Bacteria  unclonable  0.000000368356  n/a   
 
 
-
 
NC_011729  PCC7424_4284  two component transcriptional regulator, winged helix family  46.88 
 
 
227 aa  198  7e-50  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007298  Daro_2259  two component heavy metal response transcriptional regulator  45.33 
 
 
225 aa  197  7.999999999999999e-50  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1208  two component heavy metal response transcriptional regulator, winged helix family  45.54 
 
 
226 aa  197  7.999999999999999e-50  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0537  two component transcriptional regulator, winged helix family  46.43 
 
 
224 aa  197  7.999999999999999e-50  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0716782  n/a   
 
 
-
 
NC_010682  Rpic_1780  two component heavy metal response transcriptional regulator, winged helix family  43.56 
 
 
228 aa  196  3e-49  Ralstonia pickettii 12J  Bacteria  normal  0.817023  normal  0.826624 
 
 
-
 
NC_013730  Slin_4793  two component transcriptional regulator, winged helix family  44.64 
 
 
225 aa  196  3e-49  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B2033  DNA-binding response regulator  42.99 
 
 
224 aa  196  3e-49  Bacillus cereus G9842  Bacteria  normal  0.725953  normal 
 
 
-
 
NC_008392  Bamb_5988  two component heavy metal response transcriptional regulator  45.09 
 
 
225 aa  196  3e-49  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_010557  BamMC406_5744  two component heavy metal response transcriptional regulator  45.09 
 
 
225 aa  195  4.0000000000000005e-49  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0360294  normal  0.749662 
 
 
-
 
NC_011725  BCB4264_A3221  DNA-binding response regulator  42.86 
 
 
224 aa  195  4.0000000000000005e-49  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0422  two component heavy metal response transcriptional regulator  45.54 
 
 
227 aa  195  5.000000000000001e-49  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2944  two component transcriptional regulator  42.99 
 
 
224 aa  195  5.000000000000001e-49  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0958095  n/a   
 
 
-
 
NC_009656  PSPA7_2348  putative two-component response regulator  44.84 
 
 
228 aa  194  8.000000000000001e-49  Pseudomonas aeruginosa PA7  Bacteria  normal  0.804247  n/a   
 
 
-
 
NC_010515  Bcenmc03_4106  two component heavy metal response transcriptional regulator  45 
 
 
223 aa  194  9e-49  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.971428 
 
 
-
 
NC_011773  BCAH820_3235  DNA-binding response regulator  42.53 
 
 
224 aa  194  9e-49  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_010003  Pmob_0851  two component transcriptional regulator  44.95 
 
 
222 aa  193  1e-48  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0187  two component transcriptional regulator  44.39 
 
 
227 aa  194  1e-48  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_4261  two component transcriptional regulator, winged helix family  43.05 
 
 
224 aa  193  2e-48  Cyanothece sp. PCC 8802  Bacteria  normal  0.906422  normal  0.0109867 
 
 
-
 
NC_008391  Bamb_5186  two component heavy metal response transcriptional regulator  44.55 
 
 
223 aa  193  2e-48  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_27810  putative two-component response regulator  44.39 
 
 
226 aa  193  2e-48  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_3673  response regulator receiver  41.7 
 
 
227 aa  193  2e-48  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_3349  two component heavy metal response transcriptional regulator  44.09 
 
 
223 aa  192  3e-48  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4757  two component heavy metal response transcriptional regulator  44.55 
 
 
223 aa  192  3e-48  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0878196  n/a   
 
 
-
 
NC_008543  Bcen2424_3410  two component heavy metal response transcriptional regulator  44.55 
 
 
223 aa  192  3e-48  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_1718  two component heavy metal response transcriptional regulator, winged helix family  42.67 
 
 
228 aa  192  4e-48  Ralstonia pickettii 12J  Bacteria  normal  0.348336  normal 
 
 
-
 
NC_012849  Rpic12D_5335  two component heavy metal response transcriptional regulator, winged helix family  42.67 
 
 
228 aa  192  4e-48  Ralstonia pickettii 12D  Bacteria  normal  0.733276  normal  0.970872 
 
 
-
 
NC_008699  Noca_1613  response regulator receiver  43.58 
 
 
225 aa  192  4e-48  Nocardioides sp. JS614  Bacteria  normal  0.97266  n/a   
 
 
-
 
NC_011726  PCC8801_4222  two component transcriptional regulator, winged helix family  43.05 
 
 
224 aa  191  5e-48  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007973  Rmet_1751  two component heavy metal response transcriptional regulator  42.73 
 
 
224 aa  191  5e-48  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.0784096 
 
 
-
 
NC_011662  Tmz1t_4055  two component heavy metal response transcriptional regulator, winged helix family  43.36 
 
 
226 aa  191  6e-48  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_2177  response regulator receiver protein  44.75 
 
 
223 aa  191  6e-48  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  decreased coverage  0.00323539  n/a   
 
 
-
 
NC_005945  BAS2999  DNA-binding response regulator  42.08 
 
 
224 aa  191  8e-48  Bacillus anthracis str. Sterne  Bacteria  normal  0.227145  n/a   
 
 
-
 
NC_007530  GBAA_3229  DNA-binding response regulator  42.08 
 
 
224 aa  191  8e-48  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_3400  two component transcriptional regulator  42.15 
 
 
224 aa  191  8e-48  Flavobacterium johnsoniae UW101  Bacteria  normal  0.105495  n/a   
 
 
-
 
NC_008782  Ajs_1461  two component heavy metal response transcriptional regulator  43.56 
 
 
227 aa  191  8e-48  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011313  VSAL_II0723  transcriptional regulator, response regulator  44.44 
 
 
225 aa  190  1e-47  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_2104  two component transcriptional regulator, winged helix family  44.95 
 
 
225 aa  191  1e-47  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.302064  normal  0.805943 
 
 
-
 
NC_013124  Afer_0703  two component transcriptional regulator, winged helix family  45.5 
 
 
236 aa  191  1e-47  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_1247  two component transcriptional regulator, winged helix family  41.28 
 
 
235 aa  191  1e-47  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.464606  normal 
 
 
-
 
NC_013517  Sterm_2324  two component transcriptional regulator, winged helix family  44.8 
 
 
223 aa  190  1e-47  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.237639  n/a   
 
 
-
 
NC_007952  Bxe_B1389  two component heavy metal response transcriptional regulator  44.55 
 
 
225 aa  190  1e-47  Burkholderia xenovorans LB400  Bacteria  normal  0.717226  normal  0.091392 
 
 
-
 
NC_012918  GM21_3720  two component heavy metal response transcriptional regulator, winged helix family  44.59 
 
 
224 aa  190  1e-47  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008740  Maqu_3740  two component transcriptional regulator  42.41 
 
 
226 aa  191  1e-47  Marinobacter aquaeolei VT8  Bacteria  normal  0.487084  n/a   
 
 
-
 
NC_011662  Tmz1t_3985  two component heavy metal response transcriptional regulator, winged helix family  43.75 
 
 
226 aa  190  1e-47  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RSp0655  two component response regulator transcription regulator protein  43.11 
 
 
228 aa  189  2e-47  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.81937 
 
 
-
 
NC_011146  Gbem_3615  two component heavy metal response transcriptional regulator, winged helix family  43.69 
 
 
224 aa  190  2e-47  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1727  two component transcriptional regulator  41.44 
 
 
228 aa  189  2.9999999999999997e-47  Opitutus terrae PB90-1  Bacteria  normal  0.284746  normal 
 
 
-
 
NC_010676  Bphyt_5224  two component heavy metal response transcriptional regulator, winged helix family  44.55 
 
 
225 aa  189  4e-47  Burkholderia phytofirmans PsJN  Bacteria  normal  0.57611  normal 
 
 
-
 
NC_009487  SaurJH9_1476  two component transcriptional regulator  44.64 
 
 
219 aa  188  5e-47  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_3286  two component transcriptional regulator, winged helix family  42.67 
 
 
228 aa  188  5e-47  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.167791  n/a   
 
 
-
 
NC_009632  SaurJH1_1505  response regulator receiver  44.64 
 
 
219 aa  188  5e-47  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.404603  n/a   
 
 
-
 
NC_008782  Ajs_2725  two component heavy metal response transcriptional regulator  42.67 
 
 
227 aa  188  5e-47  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_3932  two component transcriptional regulator  43.38 
 
 
226 aa  188  5.999999999999999e-47  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_3855  two component heavy metal response transcriptional regulator  43.05 
 
 
226 aa  188  7e-47  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.845216 
 
 
-
 
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