More than 300 homologs were found in PanDaTox collection
for query gene Ppha_0218 on replicon NC_011060
Organism: Pelodictyon phaeoclathratiforme BU-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011060  Ppha_0218  carbamoyl phosphate synthase small subunit  100 
 
 
367 aa  764    Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_2299  carbamoyl phosphate synthase small subunit  78.63 
 
 
369 aa  614  1e-175  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.0000401664  n/a   
 
 
-
 
NC_007512  Plut_0156  carbamoyl phosphate synthase small subunit  77.53 
 
 
369 aa  614  1e-175  Chlorobium luteolum DSM 273  Bacteria  normal  0.983052  normal  0.416855 
 
 
-
 
NC_008639  Cpha266_2459  carbamoyl phosphate synthase small subunit  75.62 
 
 
369 aa  603  1.0000000000000001e-171  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.420642  n/a   
 
 
-
 
NC_007514  Cag_0107  carbamoyl phosphate synthase small subunit  75.27 
 
 
367 aa  593  1e-168  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_2349  carbamoyl phosphate synthase small subunit  74.73 
 
 
366 aa  579  1e-164  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_011059  Paes_2113  carbamoyl phosphate synthase small subunit  73.7 
 
 
371 aa  578  1e-164  Prosthecochloris aestuarii DSM 271  Bacteria  unclonable  0.000000000982338  normal  0.988223 
 
 
-
 
NC_014148  Plim_2032  carbamoyl-phosphate synthase, small subunit  55.97 
 
 
383 aa  421  1e-116  Planctomyces limnophilus DSM 3776  Bacteria  unclonable  0.000000277554  n/a   
 
 
-
 
NC_007498  Pcar_1613  carbamoyl phosphate synthase small subunit  56.03 
 
 
376 aa  415  9.999999999999999e-116  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0266912  n/a   
 
 
-
 
NC_009253  Dred_1683  carbamoyl-phosphate synthase, small subunit  54.32 
 
 
359 aa  401  1e-111  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000104913  n/a   
 
 
-
 
NC_002939  GSU1273  carbamoyl phosphate synthase small subunit  52.94 
 
 
374 aa  393  1e-108  Geobacter sulfurreducens PCA  Bacteria  normal  0.0567002  n/a   
 
 
-
 
NC_010655  Amuc_1250  carbamoyl-phosphate synthase, small subunit  51.88 
 
 
372 aa  392  1e-108  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_1771  carbamoyl phosphate synthase small subunit  52.41 
 
 
374 aa  394  1e-108  Geobacter metallireducens GS-15  Bacteria  normal  0.0224697  normal  0.089739 
 
 
-
 
NC_012918  GM21_2310  carbamoyl phosphate synthase small subunit  51.87 
 
 
374 aa  392  1e-108  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008009  Acid345_2194  carbamoyl-phosphate synthase small subunit  53.23 
 
 
373 aa  393  1e-108  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_2215  carbamoyl-phosphate synthase, small subunit  51.57 
 
 
381 aa  392  1e-108  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000311671  n/a   
 
 
-
 
NC_011138  MADE_02244  carbamoyl-phosphate synthase small subunit  51.6 
 
 
440 aa  388  1e-107  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0231375  n/a   
 
 
-
 
NC_011146  Gbem_1898  carbamoyl phosphate synthase small subunit  51.87 
 
 
374 aa  391  1e-107  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0881  carbamoyl-phosphate synthase small subunit  52.07 
 
 
361 aa  388  1e-107  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_4055  carbamoyl-phosphate synthase, small subunit  50.53 
 
 
386 aa  385  1e-106  Roseiflexus sp. RS-1  Bacteria  normal  0.103191  normal 
 
 
-
 
NC_011083  SeHA_C0070  carbamoyl phosphate synthase small subunit  51.46 
 
 
391 aa  385  1e-106  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_3203  carbamoyl-phosphate synthase, small subunit  54.22 
 
 
368 aa  387  1e-106  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3019  carbamoyl-phosphate synthase small subunit  51.74 
 
 
377 aa  387  1e-106  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A0070  carbamoyl phosphate synthase small subunit  51.19 
 
 
382 aa  382  1e-105  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A0074  carbamoyl phosphate synthase small subunit  50.93 
 
 
382 aa  381  1e-105  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_4035  carbamoyl phosphate synthase small subunit  51.62 
 
 
396 aa  383  1e-105  Marinomonas sp. MWYL1  Bacteria  normal  0.311643  normal 
 
 
-
 
NC_011831  Cagg_2643  carbamoyl-phosphate synthase, small subunit  51.74 
 
 
374 aa  384  1e-105  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A0072  carbamoyl phosphate synthase small subunit  51.46 
 
 
382 aa  384  1e-105  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.399436  normal  0.955538 
 
 
-
 
NC_009767  Rcas_3359  carbamoyl-phosphate synthase, small subunit  50.13 
 
 
386 aa  383  1e-105  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.663891  normal 
 
 
-
 
NC_009483  Gura_1858  carbamoyl phosphate synthase small subunit  51.07 
 
 
373 aa  384  1e-105  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2527  carbamoyl phosphate synthase small subunit  51.87 
 
 
373 aa  383  1e-105  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_1774  carbamoyl phosphate synthase small subunit  49.08 
 
 
393 aa  384  1e-105  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.0283036 
 
 
-
 
NC_010730  SYO3AOP1_1361  carbamoyl phosphate synthase small subunit  48.26 
 
 
376 aa  381  1e-104  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0938  carbamoyl-phosphate synthase small subunit  50.81 
 
 
385 aa  381  1e-104  Dechloromonas aromatica RCB  Bacteria  normal  0.742428  normal 
 
 
-
 
NC_009675  Anae109_2191  carbamoyl phosphate synthase small subunit  50.94 
 
 
372 aa  379  1e-104  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.352304 
 
 
-
 
NC_007404  Tbd_1127  carbamoyl-phosphate synthase small subunit  52.53 
 
 
379 aa  378  1e-104  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.390679  normal 
 
 
-
 
NC_013889  TK90_0698  carbamoyl-phosphate synthase, small subunit  49.06 
 
 
377 aa  380  1e-104  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.110228 
 
 
-
 
NC_007947  Mfla_0778  carbamoyl-phosphate synthase small subunit  50 
 
 
376 aa  381  1e-104  Methylobacillus flagellatus KT  Bacteria  normal  0.42563  hitchhiker  0.000147727 
 
 
-
 
NC_010002  Daci_4932  carbamoyl-phosphate synthase, small subunit  48.95 
 
 
388 aa  379  1e-104  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.259128 
 
 
-
 
NC_012917  PC1_3648  carbamoyl phosphate synthase small subunit  51.6 
 
 
382 aa  379  1e-104  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.48497  n/a   
 
 
-
 
NC_011992  Dtpsy_1456  carbamoyl-phosphate synthase, small subunit  49.74 
 
 
390 aa  381  1e-104  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B0073  carbamoyl phosphate synthase small subunit  50.66 
 
 
382 aa  379  1e-104  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_2392  carbamoyl-phosphate synthase small subunit  49.74 
 
 
390 aa  381  1e-104  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1811  carbamoyl phosphate synthase small subunit  50.67 
 
 
393 aa  379  1e-104  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0542874 
 
 
-
 
NC_008554  Sfum_0009  carbamoyl phosphate synthase small subunit  52.8 
 
 
391 aa  379  1e-104  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.35972  normal 
 
 
-
 
CP001509  ECD_00036  carbamoyl-phosphate synthase small subunit  49.34 
 
 
382 aa  375  1e-103  Escherichia coli BL21(DE3)  Bacteria  normal  0.53844  n/a   
 
 
-
 
CP001637  EcDH1_3567  carbamoyl-phosphate synthase, small subunit  49.34 
 
 
382 aa  375  1e-103  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0372  carbamoyl-phosphate synthase, small subunit  50.7 
 
 
359 aa  377  1e-103  Ammonifex degensii KC4  Bacteria  normal  0.386907  n/a   
 
 
-
 
NC_010658  SbBS512_E0036  carbamoyl phosphate synthase small subunit  49.34 
 
 
382 aa  375  1e-103  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1731  carbamoyl phosphate synthase small subunit  49.47 
 
 
380 aa  375  1e-103  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_0120  carbamoyl-phosphate synthase, small subunit  49.48 
 
 
380 aa  375  1e-103  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A0035  carbamoyl phosphate synthase small subunit  49.34 
 
 
382 aa  375  1e-103  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_2122  carbamoyl phosphate synthase small subunit  51.61 
 
 
391 aa  377  1e-103  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.618886 
 
 
-
 
NC_012892  B21_00035  hypothetical protein  49.34 
 
 
382 aa  375  1e-103  Escherichia coli BL21  Bacteria  normal  0.457385  n/a   
 
 
-
 
NC_008789  Hhal_1776  carbamoyl-phosphate synthase, small subunit  49.87 
 
 
379 aa  375  1e-103  Halorhodospira halophila SL1  Bacteria  normal  0.0616181  n/a   
 
 
-
 
NC_010498  EcSMS35_0032  carbamoyl phosphate synthase small subunit  49.34 
 
 
391 aa  375  1e-103  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_0033  carbamoyl phosphate synthase small subunit  49.34 
 
 
382 aa  375  1e-103  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_0035  carbamoyl phosphate synthase small subunit  49.34 
 
 
382 aa  375  1e-103  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_1982  carbamoyl-phosphate synthase small subunit  50.53 
 
 
386 aa  375  1e-103  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.157941  normal  0.0125598 
 
 
-
 
NC_009436  Ent638_0591  carbamoyl phosphate synthase small subunit  49.6 
 
 
382 aa  373  1e-102  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_1019  carbamoyl-phosphate synthase, small subunit  48.57 
 
 
397 aa  374  1e-102  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2083  carbamoyl phosphate synthase small subunit  50.27 
 
 
373 aa  372  1e-102  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2240  carbamoyl phosphate synthase small subunit  50.27 
 
 
373 aa  374  1e-102  Anaeromyxobacter sp. K  Bacteria  normal  0.513182  n/a   
 
 
-
 
NC_013216  Dtox_2353  carbamoyl-phosphate synthase, small subunit  50.83 
 
 
358 aa  374  1e-102  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.00528586  normal 
 
 
-
 
NC_010468  EcolC_3623  carbamoyl phosphate synthase small subunit  49.34 
 
 
382 aa  373  1e-102  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.314254 
 
 
-
 
NC_007912  Sde_2729  carbamoyl-phosphate synthase small subunit  49.06 
 
 
387 aa  373  1e-102  Saccharophagus degradans 2-40  Bacteria  normal  0.422158  normal 
 
 
-
 
NC_011891  A2cp1_2328  carbamoyl phosphate synthase small subunit  50.27 
 
 
373 aa  372  1e-102  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_1011  carbamoyl phosphate synthase small subunit  48.77 
 
 
364 aa  371  1e-102  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_004479  carbamoyl-phosphate synthase small chain  52.27 
 
 
379 aa  374  1e-102  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_0896  carbamoyl-phosphate synthase, small subunit  49.6 
 
 
378 aa  372  1e-102  Psychromonas ingrahamii 37  Bacteria  normal  0.348294  normal  0.560722 
 
 
-
 
NC_008752  Aave_2610  carbamoyl-phosphate synthase, small subunit  48.28 
 
 
392 aa  372  1e-102  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.752092 
 
 
-
 
NC_011884  Cyan7425_1942  carbamoyl phosphate synthase small subunit  50.13 
 
 
389 aa  369  1e-101  Cyanothece sp. PCC 7425  Bacteria  normal  0.230816  normal  0.202912 
 
 
-
 
NC_003910  CPS_3459  carbamoyl phosphate synthase small subunit  49.74 
 
 
383 aa  370  1e-101  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_3196  carbamoyl phosphate synthase small subunit  50.53 
 
 
379 aa  369  1e-101  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0368063 
 
 
-
 
NC_013421  Pecwa_3841  carbamoyl phosphate synthase small subunit  50.53 
 
 
382 aa  371  1e-101  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_0554  carbamoyl-phosphate synthase, small subunit  49.87 
 
 
381 aa  369  1e-101  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00912  carbamoyl phosphate synthase small subunit  51.84 
 
 
416 aa  371  1e-101  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010531  Pnec_0848  carbamoyl-phosphate synthase, small subunit  47.79 
 
 
398 aa  369  1e-101  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.287672 
 
 
-
 
NC_007614  Nmul_A0478  carbamoyl-phosphate synthase, small subunit  48.28 
 
 
383 aa  369  1e-101  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2783  carbamoyl phosphate synthase small subunit  49.19 
 
 
381 aa  368  1e-101  Burkholderia thailandensis E264  Bacteria  normal  0.259596  n/a   
 
 
-
 
NC_007760  Adeh_1620  carbamoyl phosphate synthase small subunit  50.27 
 
 
373 aa  370  1e-101  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.394714  n/a   
 
 
-
 
NC_010424  Daud_1303  carbamoyl-phosphate synthase, small subunit  51.94 
 
 
359 aa  370  1e-101  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0780078  n/a   
 
 
-
 
NC_007948  Bpro_2679  carbamoyl phosphate synthase small subunit  47.42 
 
 
401 aa  369  1e-101  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0975  carbamoyl-phosphate synthase, small subunit  48.81 
 
 
379 aa  370  1e-101  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_3086  carbamoyl-phosphate synthase small subunit  49.74 
 
 
381 aa  370  1e-101  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0580438  n/a   
 
 
-
 
NC_009457  VC0395_A1968  carbamoyl phosphate synthase small subunit  51.06 
 
 
379 aa  370  1e-101  Vibrio cholerae O395  Bacteria  normal  0.837999  n/a   
 
 
-
 
NC_010577  XfasM23_0392  carbamoyl phosphate synthase small subunit  49.87 
 
 
399 aa  369  1e-101  Xylella fastidiosa M23  Bacteria  normal  0.166847  n/a   
 
 
-
 
NC_010513  Xfasm12_0451  carbamoyl phosphate synthase small subunit  49.87 
 
 
399 aa  370  1e-101  Xylella fastidiosa M12  Bacteria  normal  0.758109  n/a   
 
 
-
 
NC_010717  PXO_00088  carbamoyl phosphate synthase small subunit  49.33 
 
 
390 aa  368  1e-101  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.562291  n/a   
 
 
-
 
NC_008463  PA14_62930  carbamoyl phosphate synthase small subunit  49.33 
 
 
378 aa  371  1e-101  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011312  VSAL_I0585  carbamoyl phosphate synthase small subunit  50.39 
 
 
384 aa  370  1e-101  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0152244  n/a   
 
 
-
 
NC_012880  Dd703_0592  carbamoyl-phosphate synthase, small subunit  50.66 
 
 
382 aa  369  1e-101  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_1728  carbamoyl phosphate synthase small subunit  50 
 
 
378 aa  366  1e-100  Ralstonia pickettii 12D  Bacteria  normal  0.590257  normal  0.961099 
 
 
-
 
NC_008785  BMASAVP1_A1281  carbamoyl phosphate synthase small subunit  48.39 
 
 
381 aa  366  1e-100  Burkholderia mallei SAVP1  Bacteria  normal  0.697849  n/a   
 
 
-
 
NC_009438  Sputcn32_2940  carbamoyl phosphate synthase small subunit  50.26 
 
 
386 aa  365  1e-100  Shewanella putrefaciens CN-32  Bacteria  normal  0.185194  n/a   
 
 
-
 
NC_007434  BURPS1710b_1608  carbamoyl phosphate synthase small subunit  48.39 
 
 
381 aa  367  1e-100  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3404  carbamoyl phosphate synthase small subunit  49.07 
 
 
385 aa  367  1e-100  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000786314 
 
 
-
 
NC_014248  Aazo_2282  carbamoyl-phosphate synthase small subunit  49.47 
 
 
385 aa  367  1e-100  'Nostoc azollae' 0708  Bacteria  normal  0.332421  n/a   
 
 
-
 
NC_008700  Sama_2504  carbamoyl phosphate synthase small subunit  49.47 
 
 
381 aa  366  1e-100  Shewanella amazonensis SB2B  Bacteria  normal  0.323519  normal 
 
 
-
 
NC_008740  Maqu_3359  carbamoyl-phosphate synthase, small subunit  48.27 
 
 
381 aa  365  1e-100  Marinobacter aquaeolei VT8  Bacteria  normal  0.365692  n/a   
 
 
-
 
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