More than 300 homologs were found in PanDaTox collection
for query gene Pnuc_1186 on replicon NC_009379
Organism: Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009379  Pnuc_1186  binding-protein-dependent transport systems inner membrane component  100 
 
 
257 aa  515  1.0000000000000001e-145  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.409709  n/a   
 
 
-
 
NC_012917  PC1_3747  binding-protein-dependent transport systems inner membrane component  72.76 
 
 
254 aa  364  1e-100  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_0834  binding-protein-dependent transport systems inner membrane component  61.22 
 
 
264 aa  309  2.9999999999999997e-83  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_0267  binding-protein-dependent transport systems inner membrane component  62.86 
 
 
276 aa  303  2.0000000000000002e-81  Variovorax paradoxus S110  Bacteria  normal  0.0872978  n/a   
 
 
-
 
NC_011004  Rpal_3864  binding-protein-dependent transport systems inner membrane component  56.43 
 
 
261 aa  255  6e-67  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0933  binding-protein dependent transport system inner membrane protein  55.19 
 
 
261 aa  254  8e-67  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3781  binding-protein-dependent transport systems inner membrane component  64.12 
 
 
177 aa  234  1.0000000000000001e-60  Methylobacterium populi BJ001  Bacteria  normal  0.19201  normal  0.101834 
 
 
-
 
NC_007348  Reut_B5801  binding-protein dependent transport system inner membrane protein  32.91 
 
 
290 aa  134  1.9999999999999998e-30  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_34320  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  34.31 
 
 
273 aa  130  1.0000000000000001e-29  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_4306  binding-protein-dependent transport systems inner membrane component  31.3 
 
 
278 aa  127  1.0000000000000001e-28  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0649738  hitchhiker  0.00238236 
 
 
-
 
NC_008541  Arth_3035  binding-protein-dependent transport systems inner membrane component  34.03 
 
 
298 aa  125  7e-28  Arthrobacter sp. FB24  Bacteria  normal  0.30367  n/a   
 
 
-
 
NC_009485  BBta_1369  ABC transporter membrane protein  31.22 
 
 
272 aa  124  2e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0458182 
 
 
-
 
NC_013595  Sros_8275  ABC-type transporter, permease protein  30 
 
 
272 aa  123  3e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.144641 
 
 
-
 
NC_013757  Gobs_2479  binding-protein-dependent transport systems inner membrane component  32.34 
 
 
258 aa  122  6e-27  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1818  ABC transporter, permease protein  30.92 
 
 
263 aa  122  8e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.493092 
 
 
-
 
NC_014211  Ndas_4937  binding-protein-dependent transport systems inner membrane component  30.3 
 
 
287 aa  121  9e-27  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0773955  normal 
 
 
-
 
NC_013595  Sros_1812  ABC transporter, permease protein  30.74 
 
 
257 aa  121  9.999999999999999e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  0.554956  normal  0.627316 
 
 
-
 
NC_013093  Amir_5422  binding-protein-dependent transport systems inner membrane component  32.2 
 
 
269 aa  120  1.9999999999999998e-26  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011832  Mpal_1145  binding-protein-dependent transport systems inner membrane component  31.03 
 
 
279 aa  120  1.9999999999999998e-26  Methanosphaerula palustris E1-9c  Archaea  normal  0.208956  normal 
 
 
-
 
NC_008688  Pden_5126  binding-protein-dependent transport systems inner membrane component  31.91 
 
 
280 aa  120  1.9999999999999998e-26  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_2012  binding-protein-dependent transport systems inner membrane component  29.58 
 
 
280 aa  120  3e-26  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.338733  normal  0.193625 
 
 
-
 
NC_010510  Mrad2831_6162  binding-protein-dependent transport systems inner membrane component  30.47 
 
 
262 aa  120  3e-26  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.577279 
 
 
-
 
NC_010002  Daci_0146  binding-protein-dependent transport systems inner membrane component  33.05 
 
 
296 aa  118  9e-26  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.159688 
 
 
-
 
NC_010501  PputW619_4973  binding-protein-dependent transport systems inner membrane component  32.5 
 
 
265 aa  117  9.999999999999999e-26  Pseudomonas putida W619  Bacteria  normal  0.0722896  normal  0.022026 
 
 
-
 
NC_009512  Pput_0254  binding-protein-dependent transport systems inner membrane component  31.75 
 
 
265 aa  117  9.999999999999999e-26  Pseudomonas putida F1  Bacteria  normal  0.293544  normal  0.0445843 
 
 
-
 
NC_011757  Mchl_1422  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
273 aa  118  9.999999999999999e-26  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1261  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
273 aa  118  9.999999999999999e-26  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.306936 
 
 
-
 
NC_002947  PP_0239  binding-protein-dependent transport systems inner membrane component  31.75 
 
 
265 aa  117  1.9999999999999998e-25  Pseudomonas putida KT2440  Bacteria  normal  hitchhiker  0.00756787 
 
 
-
 
NC_007492  Pfl01_5412  binding-protein dependent transport system inner membrane protein  31.85 
 
 
260 aa  116  3e-25  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.210037  hitchhiker  0.00191971 
 
 
-
 
NC_010725  Mpop_1211  binding-protein-dependent transport systems inner membrane component  29.64 
 
 
273 aa  116  3e-25  Methylobacterium populi BJ001  Bacteria  normal  0.132759  normal  0.452833 
 
 
-
 
NC_009483  Gura_3875  binding-protein-dependent transport systems inner membrane component  31.33 
 
 
289 aa  115  5e-25  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_0263  binding-protein-dependent transport systems inner membrane component  32.08 
 
 
265 aa  115  6e-25  Pseudomonas putida GB-1  Bacteria  normal  0.791848  normal 
 
 
-
 
NC_009636  Smed_1127  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
267 aa  115  6e-25  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_5423  binding-protein-dependent transport systems inner membrane component  30.9 
 
 
298 aa  115  8.999999999999998e-25  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4214  binding-protein-dependent transport systems inner membrane component  29 
 
 
281 aa  114  1.0000000000000001e-24  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_4051  binding-protein-dependent transport systems inner membrane component  29.92 
 
 
273 aa  114  1.0000000000000001e-24  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.395379 
 
 
-
 
NC_011368  Rleg2_4541  binding-protein-dependent transport systems inner membrane component  31.2 
 
 
283 aa  114  1.0000000000000001e-24  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.193679 
 
 
-
 
NC_009436  Ent638_1453  alkanesulfonate transporter permease subunit  29.72 
 
 
263 aa  114  1.0000000000000001e-24  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_1692  putative ABC transporter membrane protein  31.38 
 
 
281 aa  114  2.0000000000000002e-24  Thermobifida fusca YX  Bacteria  hitchhiker  0.00465779  n/a   
 
 
-
 
NC_007347  Reut_A2719  binding-protein dependent transport system inner membrane protein  34.18 
 
 
284 aa  113  2.0000000000000002e-24  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4060  binding-protein dependent transport system inner membrane protein  28.35 
 
 
256 aa  114  2.0000000000000002e-24  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2566  ABC transporter, membrane subunit  29.74 
 
 
252 aa  114  2.0000000000000002e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.345232 
 
 
-
 
NC_013517  Sterm_0483  binding-protein-dependent transport systems inner membrane component  30.38 
 
 
275 aa  114  2.0000000000000002e-24  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_012854  Rleg_6387  binding-protein-dependent transport systems inner membrane component  31.37 
 
 
283 aa  113  3e-24  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.199649  normal  0.0607956 
 
 
-
 
NC_014150  Bmur_2553  binding-protein-dependent transport systems inner membrane component  31.98 
 
 
275 aa  112  4.0000000000000004e-24  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_2968  binding-protein-dependent transport systems inner membrane component  32.47 
 
 
289 aa  113  4.0000000000000004e-24  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0761961  normal 
 
 
-
 
NC_004311  BRA1188  taurine ABC transporter, permease protein  28.64 
 
 
250 aa  111  1.0000000000000001e-23  Brucella suis 1330  Bacteria  normal  0.0612406  n/a   
 
 
-
 
NC_013159  Svir_18130  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  31.74 
 
 
283 aa  111  1.0000000000000001e-23  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1642  binding-protein-dependent transport systems inner membrane component  30.57 
 
 
263 aa  110  2.0000000000000002e-23  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_0102  binding-protein-dependent transport systems inner membrane component  30.38 
 
 
263 aa  110  2.0000000000000002e-23  Variovorax paradoxus S110  Bacteria  normal  0.922239  n/a   
 
 
-
 
NC_012791  Vapar_1899  binding-protein-dependent transport systems inner membrane component  32.71 
 
 
275 aa  110  2.0000000000000002e-23  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_1736  binding-protein-dependent transport systems inner membrane component  28.63 
 
 
264 aa  110  2.0000000000000002e-23  Serratia proteamaculans 568  Bacteria  normal  0.440066  normal  0.144233 
 
 
-
 
NC_008541  Arth_3081  binding-protein-dependent transport systems inner membrane component  30.4 
 
 
257 aa  110  2.0000000000000002e-23  Arthrobacter sp. FB24  Bacteria  normal  0.0826963  n/a   
 
 
-
 
NC_010465  YPK_1957  binding-protein-dependent transport systems inner membrane component  29.96 
 
 
273 aa  110  3e-23  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1848  ABC transporter permease  29.96 
 
 
273 aa  110  3e-23  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1673  binding-protein-dependent transport systems inner membrane component  29.57 
 
 
263 aa  109  3e-23  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_3642  binding-protein-dependent transport systems inner membrane component  32.92 
 
 
275 aa  110  3e-23  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.142025  normal 
 
 
-
 
NC_012850  Rleg_2304  binding-protein-dependent transport systems inner membrane component  27.8 
 
 
278 aa  109  4.0000000000000004e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.37818 
 
 
-
 
NC_008463  PA14_19570  ABC transporter permease  29.58 
 
 
262 aa  109  5e-23  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_1684  ABC transporter permease  29.58 
 
 
262 aa  108  8.000000000000001e-23  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3869  binding-protein-dependent transport systems inner membrane component  27.67 
 
 
274 aa  108  1e-22  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_0355  putative ABC aliphatic sulfonates transporter, permease subunit  30.08 
 
 
264 aa  108  1e-22  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_0423  binding-protein-dependent transport systems inner membrane component  30.08 
 
 
264 aa  108  1e-22  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_0047  binding-protein-dependent transport systems inner membrane component  28.75 
 
 
306 aa  107  2e-22  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_0326  binding-protein-dependent transport systems inner membrane component  30.93 
 
 
257 aa  106  3e-22  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.369486  n/a   
 
 
-
 
NC_007973  Rmet_2858  binding-protein-dependent transport systems inner membrane component  31.36 
 
 
291 aa  106  3e-22  Cupriavidus metallidurans CH34  Bacteria  normal  0.582448  normal 
 
 
-
 
NC_012917  PC1_1402  binding-protein-dependent transport systems inner membrane component  29.83 
 
 
257 aa  106  5e-22  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_2276  binding-protein-dependent transport systems inner membrane component  31.3 
 
 
257 aa  105  5e-22  Methylobacterium sp. 4-46  Bacteria  normal  0.722283  normal  0.0991744 
 
 
-
 
NC_009485  BBta_3299  putative sulfonate ABC transporter, permease protein  26.36 
 
 
286 aa  106  5e-22  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.201269  normal  0.262094 
 
 
-
 
NC_009428  Rsph17025_0761  binding-protein-dependent transport systems inner membrane component  28.51 
 
 
412 aa  105  6e-22  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_0024  binding-protein-dependent transport systems inner membrane component  27.8 
 
 
264 aa  105  7e-22  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_44530  Binding-protein-dependent transport systems inner membrane component  31.82 
 
 
259 aa  105  8e-22  Azotobacter vinelandii DJ  Bacteria  normal  0.0634098  n/a   
 
 
-
 
NC_010501  PputW619_4981  binding-protein-dependent transport systems inner membrane component  27.73 
 
 
279 aa  105  9e-22  Pseudomonas putida W619  Bacteria  normal  normal  0.588836 
 
 
-
 
NC_013159  Svir_34310  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  29.1 
 
 
256 aa  105  9e-22  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_0846  binding-protein-dependent transport systems inner membrane component  26.61 
 
 
255 aa  105  9e-22  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.185051 
 
 
-
 
NC_011666  Msil_0768  binding-protein-dependent transport systems inner membrane component  27 
 
 
286 aa  104  1e-21  Methylocella silvestris BL2  Bacteria  n/a    normal  0.113876 
 
 
-
 
NC_004578  PSPTO_5315  aliphatic sulfonates ABC transporter, permease protein  31.25 
 
 
265 aa  104  1e-21  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0030  binding-protein-dependent transport systems inner membrane component  27.8 
 
 
264 aa  104  1e-21  Pectobacterium wasabiae WPP163  Bacteria  normal  0.050552  n/a   
 
 
-
 
NC_007973  Rmet_1372  binding-protein-dependent transport systems inner membrane component  28.12 
 
 
268 aa  104  1e-21  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_4332  ABC transporter permease  29.15 
 
 
298 aa  104  1e-21  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_1800  binding-protein-dependent transport systems inner membrane component  29.83 
 
 
257 aa  104  1e-21  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011981  Avi_7221  ABC transporter membrane spanning protein (nitrate/sulfonates)  27.6 
 
 
282 aa  104  1e-21  Agrobacterium vitis S4  Bacteria  normal  0.735165  n/a   
 
 
-
 
NC_002947  PP_0231  binding-protein-dependent transport systems inner membrane component  27.5 
 
 
279 aa  103  2e-21  Pseudomonas putida KT2440  Bacteria  normal  0.33405  hitchhiker  0.000710194 
 
 
-
 
NC_009485  BBta_7247  ABC transporter permease  36.18 
 
 
286 aa  103  2e-21  Bradyrhizobium sp. BTAi1  Bacteria  decreased coverage  0.00669088  normal  0.643564 
 
 
-
 
NC_013946  Mrub_1393  binding-protein-dependent transport systems inner membrane component  29.53 
 
 
254 aa  103  2e-21  Meiothermus ruber DSM 1279  Bacteria  normal  0.302994  normal  0.157809 
 
 
-
 
NC_011004  Rpal_4641  binding-protein-dependent transport systems inner membrane component  27.62 
 
 
277 aa  104  2e-21  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.750363  n/a   
 
 
-
 
NC_008709  Ping_0049  ABC taurine transporter, binding protein inner membrane component  26.58 
 
 
330 aa  104  2e-21  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.0656508 
 
 
-
 
NC_008786  Veis_1108  binding-protein-dependent transport systems inner membrane component  29.91 
 
 
255 aa  103  2e-21  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.135552 
 
 
-
 
NC_009485  BBta_2677  putative ABC transporter, permease protein  31.73 
 
 
255 aa  103  3e-21  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.58951 
 
 
-
 
NC_012791  Vapar_3844  binding-protein-dependent transport systems inner membrane component  28.27 
 
 
293 aa  103  3e-21  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_4875  binding-protein dependent transport system inner membrane protein  31.25 
 
 
265 aa  103  3e-21  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746085  normal 
 
 
-
 
NC_007298  Daro_2152  binding-protein dependent transport system inner membrane protein  27.78 
 
 
271 aa  103  3e-21  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.529987 
 
 
-
 
NC_007492  Pfl01_0210  binding-protein dependent transport system inner membrane protein  28.85 
 
 
532 aa  103  3e-21  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1380  binding-protein-dependent transporter inner membrane component  28.87 
 
 
277 aa  102  4e-21  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.153307 
 
 
-
 
NC_010084  Bmul_0421  binding-protein-dependent transport systems inner membrane component  31.09 
 
 
321 aa  102  5e-21  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.905374 
 
 
-
 
NC_009656  PSPA7_1171  taurine ABC transporter permease  27.43 
 
 
272 aa  102  5e-21  Pseudomonas aeruginosa PA7  Bacteria  normal  0.104716  n/a   
 
 
-
 
NC_012850  Rleg_3008  binding-protein-dependent transport systems inner membrane component  26.58 
 
 
280 aa  102  5e-21  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_4284  binding-protein-dependent transport systems inner membrane component  28.1 
 
 
272 aa  102  5e-21  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0949532  normal 
 
 
-
 
NC_009253  Dred_1575  binding-protein-dependent transport systems inner membrane component  24.79 
 
 
254 aa  102  6e-21  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0747147  n/a   
 
 
-
 
NC_007947  Mfla_1557  binding-protein-dependent transport systems inner membrane component  28.86 
 
 
272 aa  102  6e-21  Methylobacillus flagellatus KT  Bacteria  decreased coverage  0.00127239  hitchhiker  0.00240392 
 
 
-
 
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