More than 300 homologs were found in PanDaTox collection
for query gene Pnap_0790 on replicon NC_008781
Organism: Polaromonas naphthalenivorans CJ2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008781  Pnap_0790  two component LuxR family transcriptional regulator  100 
 
 
214 aa  434  1e-121  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.870503  normal  0.997505 
 
 
-
 
NC_007948  Bpro_4296  two component LuxR family transcriptional regulator  77.57 
 
 
214 aa  323  2e-87  Polaromonas sp. JS666  Bacteria  normal  0.891496  normal 
 
 
-
 
NC_007948  Bpro_1167  two component LuxR family transcriptional regulator  75.12 
 
 
213 aa  309  2e-83  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_1400  two component LuxR family transcriptional regulator  51.67 
 
 
216 aa  231  5e-60  Dechloromonas aromatica RCB  Bacteria  normal  0.973321  normal  0.0605156 
 
 
-
 
NC_007974  Rmet_4516  two component LuxR family transcriptional regulator  56.1 
 
 
214 aa  228  7e-59  Cupriavidus metallidurans CH34  Bacteria  normal  0.0463384  normal  0.0270495 
 
 
-
 
NC_007298  Daro_1572  two component LuxR family transcriptional regulator  54.59 
 
 
218 aa  225  3e-58  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.972408 
 
 
-
 
NC_010557  BamMC406_6196  two component LuxR family transcriptional regulator  51.94 
 
 
215 aa  221  6e-57  Burkholderia ambifaria MC40-6  Bacteria  normal  0.280791  normal  0.522243 
 
 
-
 
NC_007650  BTH_II1247  LuxR family DNA-binding response regulator  51.94 
 
 
215 aa  221  8e-57  Burkholderia thailandensis E264  Bacteria  normal  0.32702  n/a   
 
 
-
 
NC_010622  Bphy_1137  two component LuxR family transcriptional regulator  50.95 
 
 
214 aa  220  9.999999999999999e-57  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009075  BURPS668_A1634  LuxR family DNA-binding response regulator  50.97 
 
 
215 aa  218  7.999999999999999e-56  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1551  LuxR family DNA-binding response regulator  50.97 
 
 
215 aa  218  7.999999999999999e-56  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0127  LuxR family DNA-binding response regulator  50.97 
 
 
215 aa  218  7.999999999999999e-56  Burkholderia pseudomallei 1710b  Bacteria  normal  0.914848  n/a   
 
 
-
 
NC_010625  Bphy_7047  two component LuxR family transcriptional regulator  50.49 
 
 
215 aa  217  1e-55  Burkholderia phymatum STM815  Bacteria  normal  normal  0.976007 
 
 
-
 
NC_010625  Bphy_5813  two component LuxR family transcriptional regulator  50.49 
 
 
215 aa  216  2e-55  Burkholderia phymatum STM815  Bacteria  normal  normal  0.118405 
 
 
-
 
NC_007511  Bcep18194_B1652  two component LuxR family transcriptional regulator  50 
 
 
215 aa  216  2e-55  Burkholderia sp. 383  Bacteria  normal  0.187578  normal  0.308689 
 
 
-
 
NC_007951  Bxe_A1850  two component LuxR family transcriptional regulator  50.49 
 
 
216 aa  216  2e-55  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010087  Bmul_5903  two component LuxR family transcriptional regulator  50.48 
 
 
215 aa  216  2e-55  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.68975  normal  0.398777 
 
 
-
 
NC_010086  Bmul_4256  two component LuxR family transcriptional regulator  49.05 
 
 
215 aa  216  2e-55  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.282152  normal 
 
 
-
 
NC_010552  BamMC406_4248  two component LuxR family transcriptional regulator  50 
 
 
215 aa  215  2.9999999999999998e-55  Burkholderia ambifaria MC40-6  Bacteria  normal  0.206342  normal 
 
 
-
 
NC_010515  Bcenmc03_5989  two component LuxR family transcriptional regulator  50 
 
 
215 aa  215  2.9999999999999998e-55  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_3774  two component LuxR family transcriptional regulator  50 
 
 
215 aa  215  2.9999999999999998e-55  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.329832 
 
 
-
 
NC_008543  Bcen2424_4365  two component LuxR family transcriptional regulator  50 
 
 
215 aa  215  2.9999999999999998e-55  Burkholderia cenocepacia HI2424  Bacteria  normal  0.902614  normal 
 
 
-
 
NC_008061  Bcen_4002  two component LuxR family transcriptional regulator  50 
 
 
215 aa  215  4e-55  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6314  two component transcriptional regulator, LuxR family  50.49 
 
 
216 aa  215  5e-55  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6235  two component transcriptional regulator, LuxR family  50.24 
 
 
210 aa  214  8e-55  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.612124 
 
 
-
 
NC_010625  Bphy_6558  two component LuxR family transcriptional regulator  50.96 
 
 
210 aa  213  9.999999999999999e-55  Burkholderia phymatum STM815  Bacteria  normal  normal  0.458284 
 
 
-
 
NC_009075  BURPS668_A1228  LuxR family DNA-binding response regulator  49.53 
 
 
215 aa  213  1.9999999999999998e-54  Burkholderia pseudomallei 668  Bacteria  normal  0.0904383  n/a   
 
 
-
 
NC_010676  Bphyt_5584  two component transcriptional regulator, LuxR family  49.03 
 
 
215 aa  212  2.9999999999999995e-54  Burkholderia phytofirmans PsJN  Bacteria  normal  0.282667  normal 
 
 
-
 
NC_008835  BMA10229_0760  LuxR family DNA-binding response regulator  49.07 
 
 
215 aa  211  4.9999999999999996e-54  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A1725  LuxR family DNA-binding response regulator  49.07 
 
 
215 aa  211  4.9999999999999996e-54  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0703  LuxR family DNA-binding response regulator  49.07 
 
 
215 aa  211  4.9999999999999996e-54  Burkholderia mallei ATCC 23344  Bacteria  normal  0.533722  n/a   
 
 
-
 
NC_007347  Reut_A1216  two component LuxR family transcriptional regulator  50 
 
 
215 aa  211  4.9999999999999996e-54  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II1570  LuxR family DNA-binding response regulator  49.07 
 
 
215 aa  211  4.9999999999999996e-54  Burkholderia thailandensis E264  Bacteria  normal  0.17909  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1154  LuxR family DNA-binding response regulator  49.07 
 
 
215 aa  211  4.9999999999999996e-54  Burkholderia pseudomallei 1106a  Bacteria  normal  0.324728  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2427  LuxR family DNA-binding response regulator  50 
 
 
282 aa  211  5.999999999999999e-54  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_010627  Bphy_7764  two component LuxR family transcriptional regulator  49.04 
 
 
210 aa  208  6e-53  Burkholderia phymatum STM815  Bacteria  normal  0.527093  normal 
 
 
-
 
NC_008391  Bamb_5330  two component LuxR family transcriptional regulator  48.54 
 
 
215 aa  207  8e-53  Burkholderia ambifaria AMMD  Bacteria  normal  0.858277  normal 
 
 
-
 
NC_007404  Tbd_1290  two component LuxR family transcriptional regulator  50.97 
 
 
209 aa  207  1e-52  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.542915  normal 
 
 
-
 
NC_007511  Bcep18194_B2520  two component LuxR family transcriptional regulator  47.57 
 
 
214 aa  206  2e-52  Burkholderia sp. 383  Bacteria  normal  0.943169  normal  0.310419 
 
 
-
 
NC_008543  Bcen2424_3595  two component LuxR family transcriptional regulator  47.09 
 
 
215 aa  204  1e-51  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_3925  two component LuxR family transcriptional regulator  47.09 
 
 
215 aa  202  2e-51  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_5126  two component LuxR family transcriptional regulator  47.57 
 
 
209 aa  202  4e-51  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.135043  normal  0.384971 
 
 
-
 
NC_007347  Reut_A0121  two component LuxR family transcriptional regulator  46.19 
 
 
210 aa  201  6e-51  Ralstonia eutropha JMP134  Bacteria  normal  0.830531  n/a   
 
 
-
 
NC_007614  Nmul_A1336  two component LuxR family transcriptional regulator  45.41 
 
 
208 aa  201  6e-51  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_0901  two component LuxR family transcriptional regulator  45.93 
 
 
235 aa  201  6e-51  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007973  Rmet_0090  two component LuxR family transcriptional regulator  46.19 
 
 
210 aa  201  9e-51  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_0560  DNA-binding response regulator, LuxR family  47.57 
 
 
209 aa  199  3e-50  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc0192  response regulator transcription regulator protein  49.51 
 
 
215 aa  198  6e-50  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.028731 
 
 
-
 
NC_003295  RSc0292  response regulator transcription regulator protein  46.67 
 
 
210 aa  197  7e-50  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4559  two component transcriptional regulator, LuxR family  50 
 
 
215 aa  196  2.0000000000000003e-49  Ralstonia pickettii 12D  Bacteria  normal  0.0669727  normal  0.0839611 
 
 
-
 
NC_007005  Psyr_4618  LuxR response regulator receiver  47.09 
 
 
209 aa  196  2.0000000000000003e-49  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.601025 
 
 
-
 
NC_010678  Rpic_4426  two component transcriptional regulator, LuxR family  50 
 
 
215 aa  196  2.0000000000000003e-49  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0145  two component transcriptional regulator, LuxR family  46.19 
 
 
210 aa  195  3e-49  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1402  two component LuxR family transcriptional regulator  45.45 
 
 
211 aa  194  1e-48  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_012856  Rpic12D_0153  two component transcriptional regulator, LuxR family  45.71 
 
 
210 aa  194  1e-48  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1588  two component LuxR family transcriptional regulator  43.27 
 
 
215 aa  192  4e-48  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.731747  normal  0.987016 
 
 
-
 
NC_007517  Gmet_2158  two component LuxR family transcriptional regulator  42.65 
 
 
210 aa  192  4e-48  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.0301144 
 
 
-
 
NC_012791  Vapar_4108  two component transcriptional regulator, LuxR family  47.57 
 
 
210 aa  191  5e-48  Variovorax paradoxus S110  Bacteria  normal  0.755468  n/a   
 
 
-
 
NC_008463  PA14_07840  putative two-component response regulator  44.66 
 
 
210 aa  191  5e-48  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.0171986 
 
 
-
 
NC_009656  PSPA7_0745  putative two-component response regulator  44.17 
 
 
210 aa  190  1e-47  Pseudomonas aeruginosa PA7  Bacteria  normal  0.536324  n/a   
 
 
-
 
NC_007614  Nmul_A1235  two component LuxR family transcriptional regulator  42.38 
 
 
211 aa  189  2.9999999999999997e-47  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_3499  two component LuxR family transcriptional regulator  47.42 
 
 
203 aa  188  5.999999999999999e-47  Burkholderia ambifaria MC40-6  Bacteria  normal  hitchhiker  0.00551314 
 
 
-
 
NC_010002  Daci_1809  two component LuxR family transcriptional regulator  46.6 
 
 
210 aa  187  7e-47  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_0922  two component LuxR family transcriptional regulator  46.19 
 
 
210 aa  187  1e-46  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.114328  normal 
 
 
-
 
NC_007947  Mfla_1987  two component LuxR family transcriptional regulator  44.5 
 
 
215 aa  186  2e-46  Methylobacillus flagellatus KT  Bacteria  normal  0.0949899  normal 
 
 
-
 
NC_008786  Veis_0032  two component LuxR family transcriptional regulator  47.6 
 
 
210 aa  186  2e-46  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.245451  normal 
 
 
-
 
NC_008752  Aave_3862  two component LuxR family transcriptional regulator  44.76 
 
 
210 aa  185  4e-46  Acidovorax citrulli AAC00-1  Bacteria  normal  0.734244  normal 
 
 
-
 
NC_008782  Ajs_3509  two component LuxR family transcriptional regulator  46.12 
 
 
239 aa  185  4e-46  Acidovorax sp. JS42  Bacteria  normal  0.325902  normal 
 
 
-
 
NC_007948  Bpro_0881  two component LuxR family transcriptional regulator  45.71 
 
 
210 aa  185  4e-46  Polaromonas sp. JS666  Bacteria  normal  0.464883  normal  0.594453 
 
 
-
 
NC_011992  Dtpsy_2832  two component transcriptional regulator, LuxR family  45.24 
 
 
210 aa  185  4e-46  Acidovorax ebreus TPSY  Bacteria  normal  0.988429  n/a   
 
 
-
 
NC_012917  PC1_2202  two component transcriptional regulator, LuxR family  45.81 
 
 
213 aa  184  7e-46  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_4792  two component LuxR family transcriptional regulator  46.6 
 
 
209 aa  184  9e-46  Pseudomonas putida W619  Bacteria  normal  normal  0.951072 
 
 
-
 
NC_010681  Bphyt_2656  two component transcriptional regulator, LuxR family  41.9 
 
 
210 aa  183  1.0000000000000001e-45  Burkholderia phytofirmans PsJN  Bacteria  normal  0.756738  normal  0.520546 
 
 
-
 
NC_008825  Mpe_A3494  two component LuxR family transcriptional regulator  43.44 
 
 
226 aa  183  2.0000000000000003e-45  Methylibium petroleiphilum PM1  Bacteria  normal  0.514045  normal 
 
 
-
 
NC_010322  PputGB1_0441  two component LuxR family transcriptional regulator  46.12 
 
 
209 aa  182  3e-45  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0444  two component LuxR family transcriptional regulator  46.12 
 
 
209 aa  182  3e-45  Pseudomonas putida F1  Bacteria  normal  normal  0.577588 
 
 
-
 
NC_002947  PP_0410  LuxR family two component transcriptional regulator  46.12 
 
 
209 aa  182  4.0000000000000006e-45  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1895  two component transcriptional regulator, LuxR family  43.69 
 
 
213 aa  181  5.0000000000000004e-45  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_1508  two component LuxR family transcriptional regulator  41.12 
 
 
236 aa  181  7e-45  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A1460  two component LuxR family transcriptional regulator  41.43 
 
 
210 aa  180  1e-44  Burkholderia xenovorans LB400  Bacteria  normal  0.39219  normal  0.352919 
 
 
-
 
NC_011145  AnaeK_2078  two component transcriptional regulator, LuxR family  41.35 
 
 
210 aa  179  2e-44  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4004  two component LuxR family transcriptional regulator  45.15 
 
 
209 aa  178  4e-44  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1595  two component LuxR family transcriptional regulator  42.31 
 
 
209 aa  178  4.999999999999999e-44  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00167261 
 
 
-
 
NC_008825  Mpe_A0581  two component LuxR family transcriptional regulator  41.06 
 
 
210 aa  178  4.999999999999999e-44  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_0242  two component LuxR family transcriptional regulator  43.6 
 
 
211 aa  176  3e-43  Leptothrix cholodnii SP-6  Bacteria  n/a    decreased coverage  0.000159114 
 
 
-
 
NC_007760  Adeh_1762  two component LuxR family transcriptional regulator  40.38 
 
 
210 aa  175  5e-43  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1400  two component LuxR family transcriptional regulator  40.8 
 
 
205 aa  173  1.9999999999999998e-42  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009455  DehaBAV1_0849  two component LuxR family transcriptional regulator  42.36 
 
 
209 aa  171  5.999999999999999e-42  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2172  two component transcriptional regulator, LuxR family  40.19 
 
 
210 aa  169  4e-41  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2902  two component LuxR family transcriptional regulator  41.51 
 
 
212 aa  169  4e-41  Methylibium petroleiphilum PM1  Bacteria  normal  0.255362  normal 
 
 
-
 
NC_007908  Rfer_1873  two component LuxR family transcriptional regulator  40.95 
 
 
219 aa  168  6e-41  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1551  two component LuxR family transcriptional regulator  39.72 
 
 
229 aa  165  4e-40  Opitutus terrae PB90-1  Bacteria  normal  normal  0.460798 
 
 
-
 
NC_010505  Mrad2831_3042  two component LuxR family transcriptional regulator  40.47 
 
 
222 aa  166  4e-40  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.280021 
 
 
-
 
NC_010622  Bphy_0097  two component LuxR family transcriptional regulator  38.89 
 
 
218 aa  165  5.9999999999999996e-40  Burkholderia phymatum STM815  Bacteria  normal  0.605108  normal 
 
 
-
 
NC_010002  Daci_0651  two component LuxR family transcriptional regulator  38.83 
 
 
209 aa  163  1.0000000000000001e-39  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.713834 
 
 
-
 
NC_007908  Rfer_3743  two component LuxR family transcriptional regulator  38.39 
 
 
225 aa  164  1.0000000000000001e-39  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0945  two component LuxR family transcriptional regulator  38.35 
 
 
210 aa  163  1.0000000000000001e-39  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1089  two component LuxR family transcriptional regulator  38.35 
 
 
210 aa  163  1.0000000000000001e-39  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A6403  two component LuxR family transcriptional regulator  38.94 
 
 
271 aa  163  2.0000000000000002e-39  Burkholderia sp. 383  Bacteria  normal  normal  0.285313 
 
 
-
 
NC_012560  Avin_17330  Two-component response regulator, LuxR family  37.5 
 
 
211 aa  162  3e-39  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
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