More than 300 homologs were found in PanDaTox collection
for query gene Pnap_0477 on replicon NC_008781
Organism: Polaromonas naphthalenivorans CJ2



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008781  Pnap_0477  pyruvate carboxyltransferase  100 
 
 
308 aa  635    Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4155  hydroxymethylglutaryl-CoA lyase  91.18 
 
 
306 aa  585  1e-166  Polaromonas sp. JS666  Bacteria  normal  normal  0.951896 
 
 
-
 
NC_010002  Daci_5964  pyruvate carboxyltransferase  82.03 
 
 
313 aa  525  1e-148  Delftia acidovorans SPH-1  Bacteria  normal  0.0367175  normal 
 
 
-
 
NC_011992  Dtpsy_3038  pyruvate carboxyltransferase  83.33 
 
 
304 aa  521  1e-147  Acidovorax ebreus TPSY  Bacteria  normal  0.928882  n/a   
 
 
-
 
NC_008782  Ajs_3757  hydroxymethylglutaryl-CoA lyase  83.01 
 
 
304 aa  520  1e-146  Acidovorax sp. JS42  Bacteria  normal  0.0122709  normal 
 
 
-
 
NC_008752  Aave_4349  hydroxymethylglutaryl-CoA lyase  83.11 
 
 
303 aa  516  1.0000000000000001e-145  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3824  pyruvate carboxyltransferase  81.25 
 
 
302 aa  511  1e-144  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4710  pyruvate carboxyltransferase  78.29 
 
 
306 aa  500  1e-140  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A3354  hydroxymethylglutaryl-CoA lyase  76.49 
 
 
307 aa  478  1e-134  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_2115  pyruvate carboxyltransferase  76.82 
 
 
306 aa  464  9.999999999999999e-131  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.348555 
 
 
-
 
NC_008786  Veis_0514  pyruvate carboxyltransferase  74.74 
 
 
303 aa  458  9.999999999999999e-129  Verminephrobacter eiseniae EF01-2  Bacteria  decreased coverage  0.00792422  normal 
 
 
-
 
NC_009524  PsycPRwf_2063  pyruvate carboxyltransferase  67.21 
 
 
304 aa  409  1e-113  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_007969  Pcryo_0343  pyruvate carboxyltransferase  64.84 
 
 
306 aa  394  1e-109  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_007204  Psyc_0312  hydroxymethylglutaryl-CoA lyase  64.52 
 
 
306 aa  392  1e-108  Psychrobacter arcticus 273-4  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A0153  hydroxymethylglutaryl-CoA lyase  61.39 
 
 
311 aa  384  1e-105  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_0607  hydroxymethylglutaryl-CoA lyase  60.73 
 
 
310 aa  383  1e-105  Cupriavidus metallidurans CH34  Bacteria  normal  0.314247  normal  0.692973 
 
 
-
 
NC_012856  Rpic12D_0121  hydroxymethylglutaryl-CoA lyase  62.05 
 
 
309 aa  378  1e-104  Ralstonia pickettii 12D  Bacteria  normal  normal  0.649671 
 
 
-
 
NC_010682  Rpic_0114  hydroxymethylglutaryl-CoA lyase  62.05 
 
 
309 aa  380  1e-104  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0086  hydroxymethylglutaryl-CoA lyase  58.67 
 
 
301 aa  372  1e-102  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc0261  hydroxymethylglutaryl-CoA lyase  62.05 
 
 
309 aa  368  1e-101  Ralstonia solanacearum GMI1000  Bacteria  normal  0.39725  normal 
 
 
-
 
NC_007347  Reut_A1462  hydroxymethylglutaryl-CoA lyase  63.46 
 
 
317 aa  369  1e-101  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_0440  hydroxymethylglutaryl-CoA lyase  59.08 
 
 
308 aa  365  1e-100  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_2929  pyruvate carboxyltransferase  57.47 
 
 
305 aa  363  2e-99  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.0756431  n/a   
 
 
-
 
NC_010622  Bphy_0165  hydroxymethylglutaryl-CoA lyase  58.75 
 
 
308 aa  360  1e-98  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A4270  hydroxymethylglutaryl-CoA lyase  58.75 
 
 
309 aa  360  1e-98  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.0533201 
 
 
-
 
NC_007492  Pfl01_3654  hydroxymethylglutaryl-CoA lyase  58.53 
 
 
299 aa  358  6e-98  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.0630119 
 
 
-
 
NC_011662  Tmz1t_0753  pyruvate carboxyltransferase  57.89 
 
 
311 aa  358  6e-98  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0353  hydroxymethylglutaryl-CoA lyase  57.57 
 
 
311 aa  358  7e-98  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0543  hydroxymethylglutaryl-CoA lyase  57.57 
 
 
311 aa  358  7e-98  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0367  hydroxymethylglutaryl-CoA lyase  57.57 
 
 
311 aa  358  7e-98  Burkholderia pseudomallei 1106a  Bacteria  normal  0.128401  n/a   
 
 
-
 
NC_008390  Bamb_3007  hydroxymethylglutaryl-CoA lyase  59.08 
 
 
310 aa  358  8e-98  Burkholderia ambifaria AMMD  Bacteria  normal  0.868623  n/a   
 
 
-
 
NC_007651  BTH_I0313  hydroxymethylglutaryl-CoA lyase  57.89 
 
 
310 aa  358  9e-98  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_2345  hydroxymethylglutaryl-CoA lyase  59.08 
 
 
310 aa  358  9e-98  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.511724  n/a   
 
 
-
 
NC_008542  Bcen2424_2959  hydroxymethylglutaryl-CoA lyase  59.08 
 
 
310 aa  358  9e-98  Burkholderia cenocepacia HI2424  Bacteria  normal  0.504237  n/a   
 
 
-
 
NC_010551  BamMC406_2870  hydroxymethylglutaryl-CoA lyase  58.75 
 
 
310 aa  357  9.999999999999999e-98  Burkholderia ambifaria MC40-6  Bacteria  normal  0.534298  normal  0.868536 
 
 
-
 
NC_008740  Maqu_2126  pyruvate carboxyltransferase  58.8 
 
 
299 aa  356  1.9999999999999998e-97  Marinobacter aquaeolei VT8  Bacteria  normal  0.129667  n/a   
 
 
-
 
NC_010508  Bcenmc03_2980  hydroxymethylglutaryl-CoA lyase  59.14 
 
 
310 aa  355  3.9999999999999996e-97  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2029  hydroxymethylglutaryl-CoA lyase  57.76 
 
 
299 aa  355  5.999999999999999e-97  Pseudomonas mendocina ymp  Bacteria  decreased coverage  0.0062803  normal  0.740342 
 
 
-
 
NC_009901  Spea_2802  pyruvate carboxyltransferase  58.94 
 
 
301 aa  355  7.999999999999999e-97  Shewanella pealeana ATCC 700345  Bacteria  normal  0.906951  n/a   
 
 
-
 
NC_010084  Bmul_2955  hydroxymethylglutaryl-CoA lyase  58.42 
 
 
310 aa  355  7.999999999999999e-97  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A6309  hydroxymethylglutaryl-CoA lyase  58.8 
 
 
310 aa  353  2e-96  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_1526  pyruvate carboxyltransferase  58.39 
 
 
307 aa  353  2e-96  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_1358  pyruvate carboxyltransferase  58.33 
 
 
296 aa  353  2e-96  Shewanella amazonensis SB2B  Bacteria  normal  0.849399  normal  0.697753 
 
 
-
 
NC_009512  Pput_2234  hydroxymethylglutaryl-CoA lyase  57.53 
 
 
299 aa  353  2.9999999999999997e-96  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_2977  pyruvate carboxyltransferase  58.39 
 
 
307 aa  353  2.9999999999999997e-96  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3278  hydroxymethylglutaryl-CoA lyase  58.31 
 
 
300 aa  353  2.9999999999999997e-96  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1599  hydroxymethylglutaryl-CoA lyase  55.12 
 
 
308 aa  352  5e-96  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_49510  hydroxymethylglutaryl-CoA lyase  58.53 
 
 
300 aa  352  5e-96  Azotobacter vinelandii DJ  Bacteria  hitchhiker  0.00876047  n/a   
 
 
-
 
NC_010322  PputGB1_2384  hydroxymethylglutaryl-CoA lyase  56.52 
 
 
299 aa  351  8.999999999999999e-96  Pseudomonas putida GB-1  Bacteria  normal  normal  0.953332 
 
 
-
 
NC_009052  Sbal_2832  pyruvate carboxyltransferase  58.39 
 
 
307 aa  351  8.999999999999999e-96  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1943  hydroxymethylglutaryl-CoA lyase  57.58 
 
 
299 aa  350  1e-95  Pseudomonas putida W619  Bacteria  normal  0.483934  hitchhiker  0.000417953 
 
 
-
 
NC_002947  PP_3540  hydroxymethylglutaryl-CoA lyase  57.53 
 
 
299 aa  350  2e-95  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2574  pyruvate carboxyltransferase  57.81 
 
 
301 aa  349  4e-95  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_38490  hydroxymethylglutaryl-CoA lyase  57.63 
 
 
300 aa  347  1e-94  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_2850  pyruvate carboxyltransferase  57.72 
 
 
307 aa  344  8.999999999999999e-94  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_2326  hydroxymethylglutaryl-CoA lyase  56.57 
 
 
315 aa  344  1e-93  Shewanella sp. MR-4  Bacteria  normal  normal  0.43357 
 
 
-
 
NC_008322  Shewmr7_2398  hydroxymethylglutaryl-CoA lyase  56.57 
 
 
315 aa  344  1e-93  Shewanella sp. MR-7  Bacteria  normal  normal  0.515821 
 
 
-
 
NC_007484  Noc_1888  pyruvate carboxyltransferase  54.43 
 
 
306 aa  343  2.9999999999999997e-93  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2250  hydroxymethylglutaryl-CoA lyase  56.04 
 
 
295 aa  342  4e-93  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1668  hydroxymethylglutaryl-CoA lyase  56.23 
 
 
310 aa  342  7e-93  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_006368  lpp1793  hypothetical protein  55.12 
 
 
302 aa  341  1e-92  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_004347  SO_1893  hydroxymethylglutaryl-CoA lyase  56.08 
 
 
315 aa  340  2e-92  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1794  hypothetical protein  55.37 
 
 
302 aa  339  2.9999999999999998e-92  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_009727  CBUD_1542  hydroxymethylglutaryl-CoA lyase  54.49 
 
 
299 aa  340  2.9999999999999998e-92  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  0.131196  n/a   
 
 
-
 
NC_009438  Sputcn32_1715  pyruvate carboxyltransferase  56.46 
 
 
315 aa  339  4e-92  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2731  pyruvate carboxyltransferase  56.38 
 
 
296 aa  337  1.9999999999999998e-91  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02416  hydroxymethylglutaryl-CoA lyase  53.82 
 
 
298 aa  337  1.9999999999999998e-91  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010117  COXBURSA331_A0633  hydroxymethylglutaryl-CoA lyase  54.15 
 
 
299 aa  335  3.9999999999999995e-91  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1854  pyruvate carboxyltransferase  54.33 
 
 
301 aa  333  3e-90  Xanthobacter autotrophicus Py2  Bacteria  normal  0.41694  normal 
 
 
-
 
NC_009831  Ssed_1454  pyruvate carboxyltransferase  55.03 
 
 
296 aa  332  6e-90  Shewanella sediminis HAW-EB3  Bacteria  normal  0.119329  normal 
 
 
-
 
NC_007005  Psyr_2471  hydroxymethylglutaryl-CoA lyase  53.97 
 
 
299 aa  331  1e-89  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.100008 
 
 
-
 
NC_010506  Swoo_3227  pyruvate carboxyltransferase  56.23 
 
 
296 aa  331  1e-89  Shewanella woodyi ATCC 51908  Bacteria  normal  0.461669  normal  0.0268749 
 
 
-
 
NC_004578  PSPTO_2742  hydroxymethylglutaryl-CoA lyase  54.33 
 
 
299 aa  330  3e-89  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001540  hydroxymethylglutaryl-CoA lyase  53.29 
 
 
302 aa  328  7e-89  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3293  hydroxymethylglutaryl-CoA lyase  55.37 
 
 
309 aa  325  4.0000000000000003e-88  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_000381  hydroxymethylglutaryl-CoA lyase  54.7 
 
 
309 aa  324  1e-87  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_05477  hydroxymethylglutaryl-CoA lyase  53.33 
 
 
298 aa  324  1e-87  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007643  Rru_A1940  hydroxymethylglutaryl-CoA lyase  55.36 
 
 
304 aa  310  2.9999999999999997e-83  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.307176  n/a   
 
 
-
 
NC_011680  PHATRDRAFT_13643  hydroxymethylglutaryl-coenzyme A lyase  52.52 
 
 
321 aa  306  3e-82  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  0.404031  n/a   
 
 
-
 
NC_011071  Smal_1800  pyruvate carboxyltransferase  51.7 
 
 
298 aa  306  4.0000000000000004e-82  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0874728 
 
 
-
 
NC_009485  BBta_4049  hydroxymethylglutaryl-CoA lyase  52.16 
 
 
303 aa  305  6e-82  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0594588  normal  0.373552 
 
 
-
 
NC_007958  RPD_2536  pyruvate carboxyltransferase  51.32 
 
 
306 aa  301  9e-81  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011981  Avi_7692  hydroxymethylglutaryl-CoA lyase  52.01 
 
 
307 aa  299  3e-80  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_2780  pyruvate carboxyltransferase  50 
 
 
301 aa  299  4e-80  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.262601  normal  0.241199 
 
 
-
 
NC_013411  GYMC61_2443  hydroxymethylglutaryl-CoA lyase  51.03 
 
 
297 aa  299  5e-80  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007778  RPB_2932  pyruvate carboxyltransferase  51.34 
 
 
301 aa  299  5e-80  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.991309 
 
 
-
 
NC_009667  Oant_0040  hydroxymethylglutaryl-CoA lyase  53.74 
 
 
287 aa  295  5e-79  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.723185  n/a   
 
 
-
 
NC_010717  PXO_00102  hydroxymethylglutaryl-CoA lyase  51.01 
 
 
298 aa  294  1e-78  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.135051  n/a   
 
 
-
 
NC_012793  GWCH70_1838  hydroxymethylglutaryl-CoA lyase  48.97 
 
 
299 aa  292  5e-78  Geobacillus sp. WCH70  Bacteria  normal  0.611608  n/a   
 
 
-
 
NC_009505  BOV_0014  hydroxymethylglutaryl-CoA lyase  53.74 
 
 
287 aa  292  5e-78  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4536  hydroxymethylglutaryl-CoA lyase  53.09 
 
 
289 aa  291  9e-78  Sinorhizobium medicae WSM419  Bacteria  normal  0.696155  normal 
 
 
-
 
NC_011004  Rpal_2810  pyruvate carboxyltransferase  49.33 
 
 
301 aa  290  2e-77  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.631686  n/a   
 
 
-
 
NC_013159  Svir_05920  hydroxymethylglutaryl-CoA lyase  48.83 
 
 
314 aa  289  4e-77  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.935262 
 
 
-
 
NC_014165  Tbis_2152  pyruvate carboxyltransferase  49.32 
 
 
298 aa  289  5.0000000000000004e-77  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_3074  pyruvate carboxyltransferase  48.38 
 
 
306 aa  283  2.0000000000000002e-75  Pseudomonas putida F1  Bacteria  normal  0.0190421  normal 
 
 
-
 
NC_008044  TM1040_0739  hydroxymethylglutaryl-CoA lyase  52.4 
 
 
288 aa  278  7e-74  Ruegeria sp. TM1040  Bacteria  normal  0.5891  normal  0.963586 
 
 
-
 
NC_013093  Amir_6387  pyruvate carboxyltransferase  48.66 
 
 
309 aa  278  1e-73  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0160856  n/a   
 
 
-
 
NC_008687  Pden_3641  hydroxymethylglutaryl-CoA lyase  51.48 
 
 
289 aa  277  2e-73  Paracoccus denitrificans PD1222  Bacteria  normal  0.520749  normal  0.388068 
 
 
-
 
BN001301  ANIA_10797  hydroxymethylglutaryl-CoA lyase (AFU_orthologue; AFUA_2G12450)  45.17 
 
 
353 aa  276  3e-73  Aspergillus nidulans FGSC A4  Eukaryota  normal  0.94715  normal  0.278378 
 
 
-
 
NC_013440  Hoch_3592  pyruvate carboxyltransferase  45.7 
 
 
314 aa  274  1.0000000000000001e-72  Haliangium ochraceum DSM 14365  Bacteria  normal  0.255257  hitchhiker  0.00183471 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>