More than 300 homologs were found in PanDaTox collection
for query gene Pmob_0070 on replicon NC_010003
Organism: Petrotoga mobilis SJ95



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010003  Pmob_0070  RpiR family transcriptional regulator  100 
 
 
269 aa  551  1e-156  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_1541  RpiR family transcriptional regulator  40.66 
 
 
266 aa  193  3e-48  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000907266  n/a   
 
 
-
 
NC_010483  TRQ2_1590  RpiR family transcriptional regulator  40.66 
 
 
266 aa  192  4e-48  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.000388341  n/a   
 
 
-
 
NC_011661  Dtur_1776  transcriptional regulator, RpiR family  36.72 
 
 
281 aa  154  2e-36  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2088  RpiR family transcriptional regulator  35.08 
 
 
284 aa  146  4.0000000000000006e-34  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0949278  n/a   
 
 
-
 
NC_009674  Bcer98_1662  RpiR family transcriptional regulator  35.08 
 
 
284 aa  145  5e-34  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.574027  n/a   
 
 
-
 
NC_012034  Athe_1993  transcriptional regulator, RpiR family  33.58 
 
 
280 aa  141  9.999999999999999e-33  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B3077  transcriptional regulator, RpiR family  33.21 
 
 
284 aa  141  9.999999999999999e-33  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.0000143664 
 
 
-
 
NC_003909  BCE_2295  RpiR family transcriptional regulator  33.87 
 
 
284 aa  140  1.9999999999999998e-32  Bacillus cereus ATCC 10987  Bacteria  normal  0.651664  n/a   
 
 
-
 
NC_010622  Bphy_2581  RpiR family transcriptional regulator  33.78 
 
 
278 aa  139  3.9999999999999997e-32  Burkholderia phymatum STM815  Bacteria  normal  0.0624506  hitchhiker  0.000000255705 
 
 
-
 
NC_011725  BCB4264_A2246  transcriptional regulator, RpiR family  32.83 
 
 
284 aa  139  3.9999999999999997e-32  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0182  RpiR family transcriptional regulator  32.54 
 
 
279 aa  138  1e-31  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_0283  transcriptional regulator, RpiR family  31.73 
 
 
279 aa  137  2e-31  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_0168  RpiR family transcriptional regulator  32.02 
 
 
280 aa  136  3.0000000000000003e-31  Thermoanaerobacter sp. X514  Bacteria  normal  0.057217  n/a   
 
 
-
 
NC_013517  Sterm_2433  transcriptional regulator, RpiR family  34.24 
 
 
282 aa  136  3.0000000000000003e-31  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.00000784459  n/a   
 
 
-
 
NC_008262  CPR_0179  RpiR family transcriptional regulator  32.14 
 
 
279 aa  135  5e-31  Clostridium perfringens SM101  Bacteria  normal  0.912597  n/a   
 
 
-
 
NC_010681  Bphyt_3371  transcriptional regulator, RpiR family  31 
 
 
281 aa  134  1.9999999999999998e-30  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0964604  hitchhiker  0.00000000707391 
 
 
-
 
NC_010003  Pmob_0521  RpiR family transcriptional regulator  36.5 
 
 
283 aa  133  3e-30  Petrotoga mobilis SJ95  Bacteria  normal  0.207231  n/a   
 
 
-
 
NC_007973  Rmet_1044  RpiR family transcriptional regulator  30.04 
 
 
338 aa  132  3.9999999999999996e-30  Cupriavidus metallidurans CH34  Bacteria  normal  0.408154  normal  0.734102 
 
 
-
 
NC_007347  Reut_A1080  RpiR family transcriptional regulator  31.23 
 
 
318 aa  132  7.999999999999999e-30  Ralstonia eutropha JMP134  Bacteria  normal  0.0801962  n/a   
 
 
-
 
NC_007951  Bxe_A0588  RpiR family transcriptional regulator  31.42 
 
 
273 aa  131  9e-30  Burkholderia xenovorans LB400  Bacteria  normal  0.189062  normal 
 
 
-
 
NC_007963  Csal_3272  RpiR family transcriptional regulator  31.42 
 
 
289 aa  131  9e-30  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.854433  n/a   
 
 
-
 
NC_013159  Svir_35980  transcriptional regulator, RpiR family  32.05 
 
 
333 aa  131  1.0000000000000001e-29  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.309329  normal  0.261129 
 
 
-
 
NC_007777  Francci3_3036  RpiR family transcriptional regulator  29.88 
 
 
293 aa  125  5e-28  Frankia sp. CcI3  Bacteria  normal  normal  0.627986 
 
 
-
 
NC_007794  Saro_1547  RpiR family transcriptional regulator  30.86 
 
 
296 aa  125  5e-28  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_6227  putative transcriptional regulator  32.38 
 
 
293 aa  125  1e-27  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0875  putative transcriptional regulator, RpiR family  30.47 
 
 
287 aa  124  1e-27  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_71780  RpiR family transcriptional regulator  32.38 
 
 
293 aa  124  1e-27  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B4460  putative transcriptional regulator, RpiR family  30.47 
 
 
287 aa  122  6e-27  Bacillus cereus G9842  Bacteria  normal  normal  0.857974 
 
 
-
 
NC_012793  GWCH70_1468  transcriptional regulator, RpiR family  31.62 
 
 
286 aa  121  9.999999999999999e-27  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000610661  n/a   
 
 
-
 
NC_008390  Bamb_0554  RpiR family transcriptional regulator  29.35 
 
 
282 aa  121  9.999999999999999e-27  Burkholderia ambifaria AMMD  Bacteria  normal  0.335525  n/a   
 
 
-
 
NC_010551  BamMC406_0580  RpiR family transcriptional regulator  29.35 
 
 
282 aa  121  9.999999999999999e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  0.658912  normal  0.89076 
 
 
-
 
NC_007510  Bcep18194_A3745  RpiR family transcriptional regulator  29.35 
 
 
282 aa  120  1.9999999999999998e-26  Burkholderia sp. 383  Bacteria  normal  normal  0.767556 
 
 
-
 
NC_010508  Bcenmc03_0626  RpiR family transcriptional regulator  29.35 
 
 
282 aa  120  3e-26  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_0176  RpiR family transcriptional regulator  29.35 
 
 
282 aa  120  3e-26  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_02030  transcriptional regulatory protein HexR  29.39 
 
 
288 aa  120  3e-26  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0659  RpiR family transcriptional regulator  29.35 
 
 
282 aa  120  3e-26  Burkholderia cenocepacia HI2424  Bacteria  normal  0.78991  n/a   
 
 
-
 
NC_009080  BMA10247_2002  bifunctional glucokinase/RpiR family transcriptional regulator  29.82 
 
 
620 aa  119  3.9999999999999996e-26  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0778  bifunctional glucokinase/RpiR family transcriptional regulator  29.82 
 
 
620 aa  119  3.9999999999999996e-26  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2612  bifunctional glucokinase/RpiR family transcriptional regulator  29.82 
 
 
620 aa  119  3.9999999999999996e-26  Burkholderia mallei NCTC 10229  Bacteria  normal  0.85018  n/a   
 
 
-
 
NC_009074  BURPS668_3001  bifunctional glucokinase/RpiR family transcriptional regulator  29.82 
 
 
641 aa  119  4.9999999999999996e-26  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3055  bifunctional glucokinase/RpiR family transcriptional regulator  29.82 
 
 
641 aa  119  6e-26  Burkholderia pseudomallei 1106a  Bacteria  normal  0.570164  n/a   
 
 
-
 
NC_007434  BURPS1710b_3090  bifunctional glucokinase/RpiR family transcriptional regulator  29.82 
 
 
641 aa  119  6e-26  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0731  RpiR family transcriptional regulator  29.75 
 
 
287 aa  119  6e-26  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1550  bifunctional glucokinase/RpiR family transcriptional regulator  29.82 
 
 
641 aa  119  7e-26  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4485  RpiR family transcriptional regulator  31.15 
 
 
288 aa  117  9.999999999999999e-26  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS0782  RpiR family transcriptional regulator  29.75 
 
 
287 aa  118  9.999999999999999e-26  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0731  RpiR family transcriptional regulator  29.75 
 
 
287 aa  118  9.999999999999999e-26  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2132  bifunctional glucokinase/RpiR family transcriptional regulator  29.82 
 
 
641 aa  118  9.999999999999999e-26  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0986  putative transcriptional regulator, RpiR family  29.75 
 
 
287 aa  118  9.999999999999999e-26  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0917  putative transcriptional regulator, RpiR family  29.75 
 
 
287 aa  118  9.999999999999999e-26  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  3.47337e-41 
 
 
-
 
NC_007530  GBAA_0821  RpiR family transcriptional regulator  29.75 
 
 
287 aa  118  9.999999999999999e-26  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_1162  RpiR family transcriptional regulator  30.45 
 
 
270 aa  117  9.999999999999999e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.164823  normal 
 
 
-
 
NC_010501  PputW619_4203  DNA-binding transcriptional regulator HexR  28.19 
 
 
290 aa  118  9.999999999999999e-26  Pseudomonas putida W619  Bacteria  normal  0.988768  normal 
 
 
-
 
NC_010322  PputGB1_1019  DNA-binding transcriptional regulator HexR  28.19 
 
 
290 aa  117  1.9999999999999998e-25  Pseudomonas putida GB-1  Bacteria  normal  0.150266  normal 
 
 
-
 
NC_002947  PP_1021  DNA-binding transcriptional regulator HexR  28.19 
 
 
290 aa  117  1.9999999999999998e-25  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_0837  bifunctional glucokinase/RpiR family transcriptional regulator  29.92 
 
 
642 aa  117  1.9999999999999998e-25  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_0912  RpiR family transcriptional regulator  29.75 
 
 
287 aa  117  1.9999999999999998e-25  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0717  RpiR family transcriptional regulator  29.75 
 
 
287 aa  117  1.9999999999999998e-25  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_2832  RpiR family transcriptional regulator  31.11 
 
 
319 aa  117  1.9999999999999998e-25  Frankia sp. CcI3  Bacteria  normal  0.233384  normal 
 
 
-
 
NC_009512  Pput_1059  DNA-binding transcriptional regulator HexR  28.19 
 
 
290 aa  117  1.9999999999999998e-25  Pseudomonas putida F1  Bacteria  normal  0.629947  normal 
 
 
-
 
NC_008390  Bamb_0825  bifunctional glucokinase/RpiR family transcriptional regulator  29.92 
 
 
642 aa  117  1.9999999999999998e-25  Burkholderia ambifaria AMMD  Bacteria  normal  0.125163  n/a   
 
 
-
 
NC_013515  Smon_1050  transcriptional regulator, RpiR family  30.38 
 
 
272 aa  116  3e-25  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_007510  Bcep18194_A4068  bifunctional glucokinase/RpiR family transcriptional regulator  29.92 
 
 
642 aa  116  3e-25  Burkholderia sp. 383  Bacteria  normal  0.0150237  normal 
 
 
-
 
NC_008060  Bcen_0486  bifunctional glucokinase/RpiR family transcriptional regulator  29.92 
 
 
642 aa  116  3e-25  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0926  bifunctional glucokinase/RpiR family transcriptional regulator  29.92 
 
 
642 aa  116  3e-25  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.789642  normal 
 
 
-
 
NC_009636  Smed_2468  RpiR family transcriptional regulator  29.22 
 
 
296 aa  117  3e-25  Sinorhizobium medicae WSM419  Bacteria  normal  0.899807  normal 
 
 
-
 
NC_008542  Bcen2424_0965  bifunctional glucokinase/RpiR family transcriptional regulator  29.92 
 
 
642 aa  116  3e-25  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0899614  n/a   
 
 
-
 
NC_013510  Tcur_4022  transcriptional regulator, RpiR family  28.29 
 
 
320 aa  116  3.9999999999999997e-25  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0204031  n/a   
 
 
-
 
NC_011094  SeSA_A1192  transcriptional regulator, RpiR family  28.09 
 
 
293 aa  115  6e-25  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.497061  normal  0.760306 
 
 
-
 
NC_010084  Bmul_2433  bifunctional glucokinase/RpiR family transcriptional regulator  29.77 
 
 
642 aa  115  6e-25  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.399098  normal 
 
 
-
 
NC_008700  Sama_1813  DNA-binding transcriptional regulator HexR  29.03 
 
 
284 aa  115  6e-25  Shewanella amazonensis SB2B  Bacteria  unclonable  0.00000000867158  normal 
 
 
-
 
NC_011205  SeD_A1202  RpiR family transcriptional regulator  28.09 
 
 
293 aa  115  7.999999999999999e-25  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.658823 
 
 
-
 
NC_002947  PP_5350  RpiR family transcriptional regulator  30.33 
 
 
288 aa  115  7.999999999999999e-25  Pseudomonas putida KT2440  Bacteria  normal  0.767126  hitchhiker  0.00410686 
 
 
-
 
NC_009512  Pput_5258  RpiR family transcriptional regulator  30.33 
 
 
288 aa  115  7.999999999999999e-25  Pseudomonas putida F1  Bacteria  normal  normal  0.658899 
 
 
-
 
NC_007492  Pfl01_4364  DNA-binding transcriptional regulator HexR  28.19 
 
 
289 aa  115  7.999999999999999e-25  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.289688  normal 
 
 
-
 
NC_011080  SNSL254_A1222  RpiR family transcriptional regulator  28.09 
 
 
293 aa  115  7.999999999999999e-25  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.514843 
 
 
-
 
NC_011083  SeHA_C1237  RpiR family transcriptional regulator  28.09 
 
 
293 aa  115  7.999999999999999e-25  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.676137 
 
 
-
 
NC_010322  PputGB1_5399  RpiR family transcriptional regulator  30.33 
 
 
288 aa  115  8.999999999999998e-25  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0126961 
 
 
-
 
NC_010501  PputW619_5127  RpiR family transcriptional regulator  30.33 
 
 
288 aa  115  1.0000000000000001e-24  Pseudomonas putida W619  Bacteria  normal  normal  0.334763 
 
 
-
 
NC_007492  Pfl01_5642  RpiR family transcriptional regulator  30.74 
 
 
288 aa  115  1.0000000000000001e-24  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.118263 
 
 
-
 
NC_010001  Cphy_3564  RpiR family transcriptional regulator  28.85 
 
 
284 aa  114  1.0000000000000001e-24  Clostridium phytofermentans ISDg  Bacteria  normal  0.536409  n/a   
 
 
-
 
NC_007948  Bpro_0750  RpiR family transcriptional regulator  32.58 
 
 
281 aa  114  2.0000000000000002e-24  Polaromonas sp. JS666  Bacteria  normal  0.414867  normal  0.513903 
 
 
-
 
NC_008709  Ping_2360  DNA-binding transcriptional regulator HexR  30.74 
 
 
286 aa  114  2.0000000000000002e-24  Psychromonas ingrahamii 37  Bacteria  normal  hitchhiker  0.00190607 
 
 
-
 
NC_007963  Csal_2742  DNA-binding transcriptional regulator HexR  28.25 
 
 
286 aa  113  3e-24  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2422  DNA-binding transcriptional regulator HexR  27.08 
 
 
289 aa  113  4.0000000000000004e-24  Enterobacter sp. 638  Bacteria  normal  0.0329148  normal 
 
 
-
 
NC_008786  Veis_2083  RpiR family transcriptional regulator  29.76 
 
 
285 aa  113  4.0000000000000004e-24  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.0788875 
 
 
-
 
NC_013093  Amir_0269  transcriptional regulator, RpiR family  29.02 
 
 
304 aa  112  5e-24  Actinosynnema mirum DSM 43827  Bacteria  normal  0.409833  n/a   
 
 
-
 
NC_007954  Sden_2080  DNA-binding transcriptional regulator HexR  27.08 
 
 
286 aa  112  5e-24  Shewanella denitrificans OS217  Bacteria  decreased coverage  0.00496237  n/a   
 
 
-
 
NC_010159  YpAngola_A2771  RpiR family transcriptional regulator  28 
 
 
292 aa  112  5e-24  Yersinia pestis Angola  Bacteria  normal  hitchhiker  0.00114132 
 
 
-
 
NC_009674  Bcer98_0668  RpiR family transcriptional regulator  31.1 
 
 
287 aa  112  5e-24  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_2724  RpiR family transcriptional regulator  29.03 
 
 
282 aa  112  6e-24  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_0969  DNA-binding transcriptional regulator HexR  28.15 
 
 
284 aa  112  6e-24  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1406  RpiR family transcriptional regulator  28 
 
 
292 aa  112  6e-24  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1297  RpiR family transcriptional regulator  28 
 
 
292 aa  112  6e-24  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_5515  transcriptional regulator, RpiR family  29.92 
 
 
288 aa  112  7.000000000000001e-24  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_5064  helix-turn-helix protein RpiR:sugar isomerase (SIS)  30.08 
 
 
288 aa  112  7.000000000000001e-24  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5684  putative transcriptional regulator, RpiR family  28.08 
 
 
299 aa  112  7.000000000000001e-24  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0287132  normal  0.474804 
 
 
-
 
NC_011312  VSAL_I0898  HTH-type transcriptional regulator, rpiR family  29.64 
 
 
292 aa  112  7.000000000000001e-24  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.679683  n/a   
 
 
-
 
NC_008686  Pden_0250  DNA-binding transcriptional repressor RpiR  26.12 
 
 
287 aa  112  8.000000000000001e-24  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
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