13 homologs were found in PanDaTox collection
for query gene Pmen_4516 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009439  Pmen_4516  hypothetical protein  100 
 
 		 193 aa  389  1e-107  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012560  Avin_00440  Transcriptional regulatory protein TetR family  67.2 
 
 		 188 aa  212  1.9999999999999998e-54  Azotobacter vinelandii DJ  Bacteria  normal  0.152406  n/a   
 
 
-
 
NC_007614  Nmul_A1779  TetR family transcriptional regulator  49.14 
 
 		 206 aa  162  4.0000000000000004e-39  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.787472  n/a   
 
 
-
 
NC_007484  Noc_2820  TetR family transcriptional regulator  41.85 
 
 		 213 aa  147  8e-35  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.848786  n/a   
 
 
-
 
NC_008340  Mlg_0088  TetR family transcriptional regulator  47.37 
 
 		 223 aa  139  3e-32  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_006369  lpl1141  hypothetical protein  37.84 
 
 		 203 aa  138  6e-32  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_006368  lpp1136  hypothetical protein  37.84 
 
 		 203 aa  137  7e-32  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_007643  Rru_A3282  hypothetical protein  30.86 
 
 		 214 aa  53.9  0.000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_011666  Msil_1140  transcriptional regulator, TetR family  26.34 
 
 		 242 aa  48.1  0.00007  Methylocella silvestris BL2  Bacteria  n/a    hitchhiker  0.00144314 
 
 
-
 
NC_011365  Gdia_3285  rpsU-divergently transcribed protein  31.01 
 
 		 214 aa  43.9  0.001  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007517  Gmet_0420  TetR family transcriptional regulator  23.65 
 
 		 215 aa  41.2  0.009  Geobacter metallireducens GS-15  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009511  Swit_2449  rpsU-divergently transcribed protein  23.12 
 
 		 220 aa  41.2  0.009  Sphingomonas wittichii RW1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009719  Plav_2266  regulatory protein TetR  26.98 
 
 		 204 aa  41.2  0.01  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  0.978426 
 
 
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