86 homologs were found in PanDaTox collection
for query gene Pmen_0296 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009439  Pmen_0296  isoprenoid biosynthesis protein with amidotransferase-like domain  100 
 
 		 219 aa  444  1.0000000000000001e-124  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012560  Avin_47460  isoprenoid biosynthesis protein with amidotransferase-like domain  77.88 
 
 		 217 aa  351  4e-96  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_69260  isoprenoid biosynthesis protein with amidotransferase-like domain  77.31 
 
 		 222 aa  340  9e-93  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007492  Pfl01_5468  isoprenoid biosynthesis protein with amidotransferase-like domain  75.8 
 
 		 222 aa  338  2.9999999999999998e-92  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0196269  normal  0.0591301 
 
 
-
 
NC_009656  PSPA7_5990  isoprenoid biosynthesis protein with amidotransferase-like domain  76.85 
 
 		 222 aa  338  5e-92  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_009512  Pput_5129  isoprenoid biosynthesis protein with amidotransferase-like domain  73.52 
 
 		 219 aa  336  9.999999999999999e-92  Pseudomonas putida F1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010322  PputGB1_5281  isoprenoid biosynthesis protein with amidotransferase-like domain  71.69 
 
 		 219 aa  332  3e-90  Pseudomonas putida GB-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002947  PP_5220  isoprenoid biosynthesis protein with amidotransferase-like domain  72.6 
 
 		 221 aa  332  4e-90  Pseudomonas putida KT2440  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007005  Psyr_0290  isoprenoid biosynthesis protein with amidotransferase-like domain  71.23 
 
 		 222 aa  326  2.0000000000000001e-88  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010501  PputW619_5043  isoprenoid biosynthesis protein with amidotransferase-like domain  72.6 
 
 		 221 aa  323  2e-87  Pseudomonas putida W619  Bacteria  normal  0.13515  normal  1 
 
 
-
 
NC_004578  PSPTO_5253  enhancing lycopene biosynthesis protein 2  69.86 
 
 		 222 aa  322  3e-87  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_009784  VIBHAR_05413  isoprenoid biosynthesis protein with amidotransferase-like domain  59.07 
 
 		 216 aa  270  2e-71  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009456  VC0395_0552  isoprenoid biosynthesis protein with amidotransferase-like domain  62.79 
 
 		 216 aa  268  5.9999999999999995e-71  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000000146909  n/a   
 
 
-
 
NC_008345  Sfri_3942  isoprenoid biosynthesis protein with amidotransferase-like domain  57.41 
 
 		 217 aa  261  6e-69  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00000000818119  n/a   
 
 
-
 
NC_009801  EcE24377A_3697  isoprenoid biosynthesis protein with amidotransferase-like domain  60.19 
 
 		 217 aa  259  2e-68  Escherichia coli E24377A  Bacteria  normal  1  n/a   
 
 
-
 
NC_010658  SbBS512_E3561  isoprenoid biosynthesis protein with amidotransferase-like domain  60.19 
 
 		 217 aa  259  2e-68  Shigella boydii CDC 3083-94  Bacteria  normal  1  n/a   
 
 
-
 
NC_009800  EcHS_A3402  isoprenoid biosynthesis protein with amidotransferase-like domain  59.72 
 
 		 217 aa  258  5.0000000000000005e-68  Escherichia coli HS  Bacteria  normal  1  n/a   
 
 
-
 
CP001637  EcDH1_0498  ThiJ/PfpI domain protein  59.72 
 
 		 217 aa  258  5.0000000000000005e-68  Escherichia coli DH1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010468  EcolC_0491  isoprenoid biosynthesis protein with amidotransferase-like domain  59.72 
 
 		 217 aa  258  5.0000000000000005e-68  Escherichia coli ATCC 8739  Bacteria  normal  1  normal  0.510032 
 
 
-
 
NC_012892  B21_03025  hypothetical protein  59.72 
 
 		 217 aa  258  5.0000000000000005e-68  Escherichia coli BL21  Bacteria  normal  1  n/a   
 
 
-
 
CP001509  ECD_03074  isoprenoid biosynthesis protein with amidotransferase-like domain  59.72 
 
 		 217 aa  258  5.0000000000000005e-68  Escherichia coli BL21(DE3)  Bacteria  normal  1  n/a   
 
 
-
 
NC_011094  SeSA_A3519  isoprenoid biosynthesis protein with amidotransferase-like domain  59.26 
 
 		 217 aa  258  7e-68  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011080  SNSL254_A3588  isoprenoid biosynthesis protein with amidotransferase-like domain  59.26 
 
 		 217 aa  257  9e-68  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011083  SeHA_C3624  isoprenoid biosynthesis protein with amidotransferase-like domain  59.26 
 
 		 217 aa  257  9e-68  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  1  normal  0.56206 
 
 
-
 
NC_011149  SeAg_B3517  isoprenoid biosynthesis protein with amidotransferase-like domain  59.26 
 
 		 217 aa  257  9e-68  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  1  n/a   
 
 
-
 
NC_011205  SeD_A3686  isoprenoid biosynthesis protein with amidotransferase-like domain  59.26 
 
 		 217 aa  257  9e-68  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.100268  normal  1 
 
 
-
 
NC_011353  ECH74115_4531  isoprenoid biosynthesis protein with amidotransferase-like domain  59.72 
 
 		 217 aa  257  9e-68  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010498  EcSMS35_3505  isoprenoid biosynthesis protein with amidotransferase-like domain  59.72 
 
 		 217 aa  257  1e-67  Escherichia coli SMS-3-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013457  VEA_001473  sigma cross-reacting protein 27A  56.28 
 
 		 216 aa  256  1e-67  Vibrio sp. Ex25  Bacteria  normal  0.799881  n/a   
 
 
-
 
NC_009438  Sputcn32_3905  isoprenoid biosynthesis protein with amidotransferase-like domain  59.53 
 
 		 218 aa  256  2e-67  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.0000799848  n/a   
 
 
-
 
NC_010506  Swoo_0061  isoprenoid biosynthesis protein with amidotransferase-like domain  57.21 
 
 		 217 aa  254  9e-67  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.000549643  hitchhiker  0.00000031605 
 
 
-
 
NC_008577  Shewana3_4108  isoprenoid biosynthesis protein with amidotransferase-like domain  58.53 
 
 		 218 aa  252  2.0000000000000002e-66  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000807766  normal  0.531371 
 
 
-
 
NC_004347  SO_4670  isoprenoid biosynthesis protein with amidotransferase-like domain  58.6 
 
 		 218 aa  252  4.0000000000000004e-66  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_3904  isoprenoid biosynthesis protein with amidotransferase-like domain  58.06 
 
 		 218 aa  251  8.000000000000001e-66  Shewanella sp. MR-4  Bacteria  hitchhiker  0.0000038321  normal  0.271262 
 
 
-
 
NC_011663  Sbal223_4289  isoprenoid biosynthesis protein with amidotransferase-like domain  60.19 
 
 		 220 aa  251  8.000000000000001e-66  Shewanella baltica OS223  Bacteria  hitchhiker  0.00000697877  hitchhiker  0.0000000982153 
 
 
-
 
NC_008322  Shewmr7_3996  isoprenoid biosynthesis protein with amidotransferase-like domain  58.06 
 
 		 218 aa  251  8.000000000000001e-66  Shewanella sp. MR-7  Bacteria  decreased coverage  0.0000148784  normal  0.0198242 
 
 
-
 
NC_009052  Sbal_0054  isoprenoid biosynthesis protein with amidotransferase-like domain  60.19 
 
 		 220 aa  250  1e-65  Shewanella baltica OS155  Bacteria  hitchhiker  0.0000000150521  n/a   
 
 
-
 
NC_009997  Sbal195_4484  isoprenoid biosynthesis protein with amidotransferase-like domain  60.19 
 
 		 220 aa  250  1e-65  Shewanella baltica OS195  Bacteria  hitchhiker  0.0000843993  hitchhiker  0.00766918 
 
 
-
 
NC_008700  Sama_0094  isoprenoid biosynthesis protein with amidotransferase-like domain  58.33 
 
 		 217 aa  248  4e-65  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.00000108389  normal  0.0160818 
 
 
-
 
NC_009665  Shew185_4344  isoprenoid biosynthesis protein with amidotransferase-like domain  59.72 
 
 		 220 aa  248  4e-65  Shewanella baltica OS185  Bacteria  hitchhiker  0.000000000364438  n/a   
 
 
-
 
NC_007954  Sden_3619  isoprenoid biosynthesis protein with amidotransferase-like domain  56.48 
 
 		 221 aa  248  6e-65  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00000183694  n/a   
 
 
-
 
NC_009832  Spro_4341  isoprenoid biosynthesis protein with amidotransferase-like domain  56.94 
 
 		 217 aa  247  8e-65  Serratia proteamaculans 568  Bacteria  normal  0.293194  normal  0.124314 
 
 
-
 
NC_009436  Ent638_3644  isoprenoid biosynthesis protein with amidotransferase-like domain  57.87 
 
 		 217 aa  246  1e-64  Enterobacter sp. 638  Bacteria  normal  0.0571035  normal  0.2689 
 
 
-
 
NC_009901  Spea_0103  isoprenoid biosynthesis protein with amidotransferase-like domain  57.41 
 
 		 217 aa  246  2e-64  Shewanella pealeana ATCC 700345  Bacteria  normal  0.362868  n/a   
 
 
-
 
NC_011138  MADE_00017  isoprenoid biosynthesis protein with amidotransferase-like domain  57.67 
 
 		 217 aa  246  3e-64  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_009092  Shew_3713  isoprenoid biosynthesis protein with amidotransferase-like domain  56.94 
 
 		 217 aa  245  4e-64  Shewanella loihica PV-4  Bacteria  decreased coverage  0.00000033375  normal  1 
 
 
-
 
NC_012917  PC1_0302  isoprenoid biosynthesis protein with amidotransferase-like domain  56.02 
 
 		 217 aa  244  8e-64  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0305072  n/a   
 
 
-
 
NC_013421  Pecwa_0308  isoprenoid biosynthesis protein with amidotransferase-like domain  55.09 
 
 		 218 aa  243  1.9999999999999999e-63  Pectobacterium wasabiae WPP163  Bacteria  normal  0.30662  n/a   
 
 
-
 
NC_009831  Ssed_0097  isoprenoid biosynthesis protein with amidotransferase-like domain  54.88 
 
 		 217 aa  241  9e-63  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.0000459976  hitchhiker  0.000821715 
 
 
-
 
NC_009777  VIBHAR_p08222  isoprenoid biosynthesis protein with amidotransferase-like domain  53.74 
 
 		 215 aa  236  2e-61  Vibrio harveyi ATCC BAA-1116  Bacteria  normal  0.110955  n/a   
 
 
-
 
NC_010465  YPK_0534  isoprenoid biosynthesis protein with amidotransferase-like domain  55.56 
 
 		 217 aa  236  2e-61  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.0305832  n/a   
 
 
-
 
NC_010159  YpAngola_A1125  isoprenoid biosynthesis protein with amidotransferase-like domain  55.09 
 
 		 217 aa  234  8e-61  Yersinia pestis Angola  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009708  YpsIP31758_0470  isoprenoid biosynthesis protein with amidotransferase-like domain  55.09 
 
 		 217 aa  234  9e-61  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  1  n/a   
 
 
-
 
NC_007498  Pcar_2945  isoprenoid biosynthesis protein with amidotransferase-like domain  53.7 
 
 		 218 aa  232  3e-60  Pelobacter carbinolicus DSM 2380  Bacteria  normal  1  n/a   
 
 
-
 
NC_012912  Dd1591_3788  isoprenoid biosynthesis protein with amidotransferase-like domain  55.61 
 
 		 217 aa  231  4.0000000000000004e-60  Dickeya zeae Ech1591  Bacteria  decreased coverage  0.000203972  n/a   
 
 
-
 
NC_012880  Dd703_3630  isoprenoid biosynthesis protein with amidotransferase-like domain  56.07 
 
 		 217 aa  230  2e-59  Dickeya dadantii Ech703  Bacteria  normal  0.373822  n/a   
 
 
-
 
NC_003910  CPS_4610  isoprenoid biosynthesis protein with amidotransferase-like domain  56.48 
 
 		 218 aa  226  2e-58  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_002939  GSU0074  isoprenoid biosynthesis protein with amidotransferase-like domain  53 
 
 		 217 aa  224  7e-58  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_010831  Cphamn1_0525  isoprenoid biosynthesis protein with amidotransferase-like domain  53.46 
 
 		 218 aa  224  7e-58  Chlorobium phaeobacteroides BS1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011312  VSAL_I1624  isoprenoid biosynthesis protein with amidotransferase-like domain  50 
 
 		 216 aa  223  1e-57  Aliivibrio salmonicida LFI1238  Bacteria  decreased coverage  0.000261607  n/a   
 
 
-
 
NC_008639  Cpha266_0520  isoprenoid biosynthesis protein with amidotransferase-like domain  51.85 
 
 		 218 aa  221  6e-57  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  1  n/a   
 
 
-
 
NC_007512  Plut_1659  isoprenoid biosynthesis protein with amidotransferase-like domain  52.51 
 
 		 219 aa  220  9.999999999999999e-57  Chlorobium luteolum DSM 273  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011059  Paes_0481  isoprenoid biosynthesis protein with amidotransferase-like domain  52.53 
 
 		 218 aa  219  1.9999999999999999e-56  Prosthecochloris aestuarii DSM 271  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010803  Clim_0459  isoprenoid biosynthesis protein with amidotransferase-like domain  51.85 
 
 		 218 aa  219  3e-56  Chlorobium limicola DSM 245  Bacteria  normal  1  n/a   
 
 
-
 
NC_008576  Mmc1_3487  isoprenoid biosynthesis protein with amidotransferase-like domain  51.83 
 
 		 218 aa  216  1e-55  Magnetococcus sp. MC-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010730  SYO3AOP1_0499  isoprenoid biosynthesis protein with amidotransferase-like domain  49.31 
 
 		 218 aa  216  2e-55  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009483  Gura_3959  isoprenoid biosynthesis protein with amidotransferase-like domain  51.38 
 
 		 218 aa  216  2e-55  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.0000000536533  n/a   
 
 
-
 
NC_011145  AnaeK_2160  isoprenoid biosynthesis protein with amidotransferase-like domain  52.29 
 
 		 221 aa  215  4e-55  Anaeromyxobacter sp. K  Bacteria  normal  0.0554147  n/a   
 
 
-
 
NC_007643  Rru_A3231  isoprenoid biosynthesis protein with amidotransferase-like domain  53.99 
 
 		 227 aa  214  9.999999999999999e-55  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.46619  n/a   
 
 
-
 
NC_007514  Cag_0167  isoprenoid biosynthesis protein with amidotransferase-like domain  49.08 
 
 		 225 aa  214  9.999999999999999e-55  Chlorobium chlorochromatii CaD3  Bacteria  normal  1  n/a   
 
 
-
 
NC_011891  A2cp1_2250  isoprenoid biosynthesis protein with amidotransferase-like domain  51.83 
 
 		 221 aa  213  9.999999999999999e-55  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0491464  n/a   
 
 
-
 
NC_010814  Glov_0486  isoprenoid biosynthesis protein with amidotransferase-like domain  52.07 
 
 		 217 aa  212  2.9999999999999995e-54  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000554419  n/a   
 
 
-
 
NC_007760  Adeh_1695  isoprenoid biosynthesis protein with amidotransferase-like domain  51.38 
 
 		 221 aa  211  5.999999999999999e-54  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.996152  n/a   
 
 
-
 
NC_008609  Ppro_3200  isoprenoid biosynthesis protein with amidotransferase-like domain  50 
 
 		 218 aa  207  1e-52  Pelobacter propionicus DSM 2379  Bacteria  normal  1  n/a   
 
 
-
 
NC_009675  Anae109_2110  isoprenoid biosynthesis protein with amidotransferase-like domain  53 
 
 		 221 aa  206  3e-52  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.401309  normal  0.0642029 
 
 
-
 
NC_007517  Gmet_3523  isoprenoid biosynthesis protein with amidotransferase-like domain  51.15 
 
 		 217 aa  204  9e-52  Geobacter metallireducens GS-15  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012918  GM21_0562  isoprenoid biosynthesis protein with amidotransferase-like domain  48.61 
 
 		 218 aa  196  3e-49  Geobacter sp. M21  Bacteria  n/a    decreased coverage  5.37092e-33 
 
 
-
 
NC_011146  Gbem_0550  isoprenoid biosynthesis protein with amidotransferase-like domain  47.69 
 
 		 218 aa  192  3e-48  Geobacter bemidjiensis Bem  Bacteria  unclonable  0.0000000055429  n/a   
 
 
-
 
NC_007908  Rfer_2861  isoprenoid biosynthesis protein with amidotransferase-like domain  47.96 
 
 		 226 aa  191  8e-48  Rhodoferax ferrireducens T118  Bacteria  normal  0.518579  n/a   
 
 
-
 
NC_007354  Ecaj_0940  isoprenoid biosynthesis protein with amidotransferase-like domain  41.31 
 
 		 219 aa  171  6.999999999999999e-42  Ehrlichia canis str. Jake  Bacteria  normal  0.141913  n/a   
 
 
-
 
NC_002978  WD1271  isoprenoid biosynthesis protein with amidotransferase-like domain  40.91 
 
 		 241 aa  167  9e-41  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  1  n/a   
 
 
-
 
NC_007799  ECH_0012  isoprenoid biosynthesis protein with amidotransferase-like domain  40.38 
 
 		 221 aa  165  4e-40  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  0.0240754  n/a   
 
 
-
 
NC_010505  Mrad2831_5375  PfpI family intracellular peptidase  29.48 
 
 		 192 aa  48.9  0.00006  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.130352 
 
 
-
 
NC_011831  Cagg_3754  intracellular protease, PfpI family  31.97 
 
 		 201 aa  43.1  0.003  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000120354  normal  1 
 
 
-
 
NC_007777  Francci3_0951  peptidase C56, PfpI  39.34 
 
 		 189 aa  42.4  0.006  Frankia sp. CcI3  Bacteria  normal  1  normal  0.2808 
 
 
-
 
NC_002947  PP_2491  ThiJ/PfpI family protein  27.97 
 
 		 225 aa  42  0.007  Pseudomonas putida KT2440  Bacteria  normal  1  normal  1 
 
 
-
 
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