More than 300 homologs were found in PanDaTox collection
for query gene Plav_0795 on replicon NC_009719
Organism: Parvibaculum lavamentivorans DS-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009719  Plav_0795  short-chain dehydrogenase/reductase SDR  100 
 
 
251 aa  518  1e-146  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.347308 
 
 
-
 
NC_009485  BBta_2462  short-chain dehydrogenase  75.7 
 
 
251 aa  398  9.999999999999999e-111  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_1135  short-chain dehydrogenase/reductase SDR  77.73 
 
 
262 aa  397  9.999999999999999e-111  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.768597 
 
 
-
 
NC_007964  Nham_0764  short-chain dehydrogenase/reductase SDR  77.42 
 
 
264 aa  398  9.999999999999999e-111  Nitrobacter hamburgensis X14  Bacteria  normal  0.145907  n/a   
 
 
-
 
NC_009720  Xaut_2477  short-chain dehydrogenase/reductase SDR  75.7 
 
 
249 aa  397  9.999999999999999e-111  Xanthobacter autotrophicus Py2  Bacteria  normal  0.449608  normal  0.117901 
 
 
-
 
NC_007406  Nwi_0621  Short-chain dehydrogenase/reductase SDR  76.21 
 
 
263 aa  396  1e-109  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.167858  normal 
 
 
-
 
NC_007778  RPB_1204  Short-chain dehydrogenase/reductase  76.4 
 
 
258 aa  394  1e-108  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1388  short-chain dehydrogenase/reductase SDR  76.92 
 
 
258 aa  391  1e-108  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_1067  short-chain dehydrogenase/reductase SDR  72.91 
 
 
251 aa  390  1e-108  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.186426  n/a   
 
 
-
 
NC_010505  Mrad2831_3982  short-chain dehydrogenase/reductase SDR  73.98 
 
 
251 aa  384  1e-105  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.437087  decreased coverage  0.00119468 
 
 
-
 
NC_007958  RPD_1306  short-chain dehydrogenase/reductase SDR  77.18 
 
 
239 aa  383  1e-105  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_4815  short-chain dehydrogenase/reductase SDR  73.75 
 
 
240 aa  379  1e-104  Methylobacterium populi BJ001  Bacteria  normal  0.0328303  normal  0.0791888 
 
 
-
 
NC_011757  Mchl_4666  short-chain dehydrogenase/reductase SDR  71.95 
 
 
250 aa  379  1e-104  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.307403 
 
 
-
 
NC_010172  Mext_4297  short-chain dehydrogenase/reductase SDR  71.95 
 
 
250 aa  379  1e-104  Methylobacterium extorquens PA1  Bacteria  normal  0.97771  normal 
 
 
-
 
NC_004310  BR0116  short chain dehydrogenase/reductase family oxidoreductase  71.83 
 
 
268 aa  376  1e-103  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0113  short chain dehydrogenase/reductase family oxidoreductase  71.83 
 
 
268 aa  376  1e-103  Brucella ovis ATCC 25840  Bacteria  normal  0.0686594  n/a   
 
 
-
 
NC_009667  Oant_0130  short-chain dehydrogenase/reductase SDR  71.54 
 
 
263 aa  371  1e-102  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_3987  short-chain dehydrogenase/reductase SDR  71.31 
 
 
256 aa  363  1e-99  Chelativorans sp. BNC1  Bacteria  normal  0.262642  n/a   
 
 
-
 
NC_008044  TM1040_0302  short-chain dehydrogenase/reductase SDR  68.72 
 
 
243 aa  358  5e-98  Ruegeria sp. TM1040  Bacteria  normal  0.198401  normal 
 
 
-
 
NC_009952  Dshi_0325  3-ketoacyl-(acyl-carrier-protein) reductase  67.76 
 
 
243 aa  349  2e-95  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.992211 
 
 
-
 
NC_009049  Rsph17029_2728  short-chain dehydrogenase/reductase SDR  68.03 
 
 
243 aa  346  2e-94  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.0711669 
 
 
-
 
NC_007493  RSP_1067  Short-chain alcohol dehydrogenase  67.62 
 
 
258 aa  341  7e-93  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.71076  n/a   
 
 
-
 
NC_009428  Rsph17025_2866  short-chain dehydrogenase/reductase SDR  67.21 
 
 
243 aa  340  1e-92  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5888  putative short-chain dehydrogenase  66.26 
 
 
245 aa  336  1.9999999999999998e-91  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_68040  putative short-chain dehydrogenase  66.67 
 
 
245 aa  336  1.9999999999999998e-91  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.915385  normal  0.0126935 
 
 
-
 
NC_012917  PC1_2226  short-chain dehydrogenase/reductase SDR  64.63 
 
 
244 aa  329  2e-89  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_1274  short-chain dehydrogenase/reductase SDR  63.82 
 
 
244 aa  328  4e-89  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2540  short-chain dehydrogenase/reductase SDR  63.82 
 
 
244 aa  328  6e-89  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0960196  n/a   
 
 
-
 
NC_004578  PSPTO_4082  oxidoreductase, short chain dehydrogenase/reductase family  63.67 
 
 
244 aa  327  9e-89  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.858342  n/a   
 
 
-
 
NC_011004  Rpal_5114  short-chain dehydrogenase/reductase SDR  64.23 
 
 
273 aa  321  8e-87  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3821  Short-chain dehydrogenase/reductase SDR  62.04 
 
 
244 aa  321  8e-87  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  hitchhiker  0.00400497 
 
 
-
 
NC_007778  RPB_0956  Short-chain dehydrogenase/reductase SDR  62.95 
 
 
290 aa  316  2e-85  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_5935  FixR protein  62.35 
 
 
282 aa  314  7e-85  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.415665  normal 
 
 
-
 
NC_010511  M446_3545  short-chain dehydrogenase/reductase SDR  65.29 
 
 
265 aa  313  9.999999999999999e-85  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0113148 
 
 
-
 
NC_007925  RPC_4476  short-chain dehydrogenase/reductase SDR  61.29 
 
 
306 aa  312  2.9999999999999996e-84  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.487588 
 
 
-
 
NC_007958  RPD_1060  short-chain dehydrogenase/reductase SDR  63.41 
 
 
312 aa  312  2.9999999999999996e-84  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2512  3-oxoacyl-(acyl-carrier-protein) reductase  51.65 
 
 
242 aa  256  3e-67  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6893  putative 3-oxoacyl-(acyl-carrier-protein) reductase  36.68 
 
 
266 aa  149  6e-35  Bradyrhizobium sp. BTAi1  Bacteria  hitchhiker  0.00227102  normal  0.0503904 
 
 
-
 
NC_009720  Xaut_2759  short-chain dehydrogenase/reductase SDR  36.76 
 
 
261 aa  147  1.0000000000000001e-34  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3742  short-chain dehydrogenase/reductase SDR  36.9 
 
 
260 aa  145  7.0000000000000006e-34  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.071685 
 
 
-
 
NC_007958  RPD_4158  short-chain dehydrogenase/reductase SDR  36.11 
 
 
262 aa  141  9.999999999999999e-33  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.526951  normal 
 
 
-
 
NC_011004  Rpal_1300  short-chain dehydrogenase/reductase SDR  37.4 
 
 
262 aa  140  1.9999999999999998e-32  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4257  Short-chain dehydrogenase/reductase SDR  35.18 
 
 
262 aa  134  1.9999999999999998e-30  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0797349  normal 
 
 
-
 
NC_010511  M446_1803  short-chain dehydrogenase/reductase SDR  36.14 
 
 
262 aa  134  1.9999999999999998e-30  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.225984 
 
 
-
 
NC_010505  Mrad2831_0334  3-ketoacyl-(acyl-carrier-protein) reductase  35.02 
 
 
268 aa  132  6e-30  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008739  Maqu_3915  acetoacetyl-CoA reductase  33.46 
 
 
252 aa  132  6.999999999999999e-30  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0620  3-oxoacyl-[acyl-carrier-protein] reductase  34.55 
 
 
250 aa  131  9e-30  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.890979 
 
 
-
 
NC_011894  Mnod_1178  short-chain dehydrogenase/reductase SDR  35.74 
 
 
262 aa  131  1.0000000000000001e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009954  Cmaq_1385  short-chain dehydrogenase/reductase SDR  32.68 
 
 
248 aa  130  2.0000000000000002e-29  Caldivirga maquilingensis IC-167  Archaea  normal  normal 
 
 
-
 
NC_013161  Cyan8802_0050  short-chain dehydrogenase/reductase SDR  32.82 
 
 
245 aa  129  6e-29  Cyanothece sp. PCC 8802  Bacteria  normal  0.795595  normal 
 
 
-
 
NC_011726  PCC8801_0052  short-chain dehydrogenase/reductase SDR  32.82 
 
 
245 aa  129  6e-29  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007973  Rmet_1924  short chain dehydrogenase  35.89 
 
 
238 aa  129  6e-29  Cupriavidus metallidurans CH34  Bacteria  normal  0.588945  normal 
 
 
-
 
NC_010085  Nmar_0026  short-chain dehydrogenase/reductase SDR  33.46 
 
 
269 aa  128  7.000000000000001e-29  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_009616  Tmel_1835  3-oxoacyl-(acyl-carrier-protein) reductase  34.63 
 
 
244 aa  127  1.0000000000000001e-28  Thermosipho melanesiensis BI429  Bacteria  normal  0.686329  n/a   
 
 
-
 
NC_010002  Daci_2285  acetoacetyl-CoA reductase  33.74 
 
 
255 aa  127  1.0000000000000001e-28  Delftia acidovorans SPH-1  Bacteria  normal  hitchhiker  0.00853533 
 
 
-
 
NC_008688  Pden_4822  short-chain dehydrogenase/reductase SDR  34.15 
 
 
253 aa  127  1.0000000000000001e-28  Paracoccus denitrificans PD1222  Bacteria  normal  0.237012  normal  0.451819 
 
 
-
 
NC_009077  Mjls_5682  short-chain dehydrogenase/reductase SDR  32.68 
 
 
239 aa  127  2.0000000000000002e-28  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_009954  Cmaq_0869  short-chain dehydrogenase/reductase SDR  34.78 
 
 
278 aa  127  2.0000000000000002e-28  Caldivirga maquilingensis IC-167  Archaea  normal  normal 
 
 
-
 
NC_009718  Fnod_0609  short-chain dehydrogenase/reductase SDR  34.13 
 
 
232 aa  127  2.0000000000000002e-28  Fervidobacterium nodosum Rt17-B1  Bacteria  hitchhiker  0.000037264  n/a   
 
 
-
 
NC_007333  Tfu_1682  3-ketoacyl-(acyl-carrier-protein) reductase  35.27 
 
 
252 aa  125  8.000000000000001e-28  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_5718  short chain dehydrogenase  34.88 
 
 
264 aa  124  1e-27  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_5428  short chain dehydrogenase  34.63 
 
 
264 aa  124  1e-27  Mycobacterium sp. KMS  Bacteria  normal  0.819965  normal 
 
 
-
 
NC_008146  Mmcs_5339  short chain dehydrogenase  34.63 
 
 
264 aa  124  1e-27  Mycobacterium sp. MCS  Bacteria  normal  0.146559  n/a   
 
 
-
 
NC_007336  Reut_C6018  3-oxoacyl-[acyl-carrier-protein] reductase  32.94 
 
 
247 aa  124  2e-27  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2517  short-chain dehydrogenase/reductase SDR  35.77 
 
 
257 aa  123  3e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.401645  n/a   
 
 
-
 
NC_009767  Rcas_0104  short-chain dehydrogenase/reductase SDR  36.14 
 
 
246 aa  123  3e-27  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.650868  normal 
 
 
-
 
NC_012029  Hlac_1094  short-chain dehydrogenase/reductase SDR  33.73 
 
 
257 aa  122  4e-27  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  normal 
 
 
-
 
NC_014148  Plim_2718  short-chain dehydrogenase/reductase SDR  31.52 
 
 
255 aa  122  5e-27  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.15322  n/a   
 
 
-
 
NC_013131  Caci_6492  short-chain dehydrogenase/reductase SDR  37.3 
 
 
241 aa  122  7e-27  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B1012  Short-chain dehydrogenase/reductase SDR  36.33 
 
 
251 aa  122  8e-27  Burkholderia sp. 383  Bacteria  normal  0.0198691  normal  0.370278 
 
 
-
 
NC_009976  P9211_04541  3-oxoacyl-[acyl-carrier protein] reductase  31.01 
 
 
250 aa  122  8e-27  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  0.0716484  normal 
 
 
-
 
NC_007908  Rfer_3017  short chain dehydrogenase  32.82 
 
 
260 aa  121  8e-27  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_1790  short-chain dehydrogenase/reductase SDR  30.83 
 
 
255 aa  121  8e-27  Arthrobacter sp. FB24  Bacteria  normal  0.0755029  n/a   
 
 
-
 
NC_013730  Slin_1373  3-oxoacyl-(acyl-carrier-protein) reductase  34.26 
 
 
248 aa  121  9e-27  Spirosoma linguale DSM 74  Bacteria  normal  0.124306  normal 
 
 
-
 
NC_007643  Rru_A0273  3-oxoacyl-[acyl-carrier-protein] reductase  31.47 
 
 
242 aa  121  9e-27  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_3453  short chain dehydrogenase  36.65 
 
 
239 aa  121  9.999999999999999e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_2069  short-chain dehydrogenase/reductase SDR  33.2 
 
 
240 aa  120  9.999999999999999e-27  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1270  Short-chain dehydrogenase  35.06 
 
 
248 aa  121  9.999999999999999e-27  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_2023  short-chain dehydrogenase/reductase SDR  33.2 
 
 
240 aa  120  9.999999999999999e-27  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_3739  short-chain dehydrogenase/reductase SDR  31.25 
 
 
250 aa  121  9.999999999999999e-27  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_3752  3-ketoacyl-(acyl-carrier-protein) reductase  32.18 
 
 
268 aa  120  1.9999999999999998e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_1540  short-chain dehydrogenase/reductase SDR  33.72 
 
 
267 aa  120  1.9999999999999998e-26  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.239754  n/a   
 
 
-
 
NC_008705  Mkms_5015  short-chain dehydrogenase/reductase SDR  35.66 
 
 
239 aa  120  1.9999999999999998e-26  Mycobacterium sp. KMS  Bacteria  normal  normal  0.920793 
 
 
-
 
NC_007912  Sde_1330  3-oxoacyl-[acyl-carrier-protein] reductase  31.35 
 
 
240 aa  120  1.9999999999999998e-26  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_4927  short-chain dehydrogenase/reductase SDR  35.66 
 
 
239 aa  120  1.9999999999999998e-26  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_2006  short-chain dehydrogenase/reductase SDR  33.2 
 
 
240 aa  120  1.9999999999999998e-26  Mycobacterium sp. JLS  Bacteria  normal  0.0400117  normal  0.51074 
 
 
-
 
NC_009511  Swit_3288  short-chain dehydrogenase/reductase SDR  34.27 
 
 
264 aa  119  3e-26  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.197949 
 
 
-
 
NC_008740  Maqu_2200  short chain dehydrogenase  36.76 
 
 
256 aa  120  3e-26  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0122  short-chain dehydrogenase/reductase SDR  35.34 
 
 
224 aa  119  3e-26  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_2723  short-chain dehydrogenase/reductase SDR  33.47 
 
 
251 aa  120  3e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0517  3-oxoacyl-(acyl-carrier-protein) reductase  33.46 
 
 
247 aa  120  3e-26  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4656  short-chain dehydrogenase/reductase SDR  34.4 
 
 
274 aa  119  3.9999999999999996e-26  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.138252  normal 
 
 
-
 
NC_010508  Bcenmc03_2298  glucose-1-dehydrogenase  35.66 
 
 
253 aa  119  3.9999999999999996e-26  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_5308  short-chain dehydrogenase/reductase SDR  35.66 
 
 
239 aa  119  3.9999999999999996e-26  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_4593  short-chain dehydrogenase/reductase SDR  34.92 
 
 
251 aa  119  3.9999999999999996e-26  Burkholderia ambifaria MC40-6  Bacteria  normal  hitchhiker  0.00700945 
 
 
-
 
NC_007348  Reut_B5464  NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR  32 
 
 
253 aa  119  4.9999999999999996e-26  Ralstonia eutropha JMP134  Bacteria  normal  0.852927  n/a   
 
 
-
 
NC_009380  Strop_2799  3-oxoacyl-(acyl-carrier-protein) reductase  33.33 
 
 
246 aa  119  4.9999999999999996e-26  Salinispora tropica CNB-440  Bacteria  normal  0.786413  normal 
 
 
-
 
NC_007796  Mhun_3155  short-chain dehydrogenase/reductase SDR  32.28 
 
 
249 aa  119  4.9999999999999996e-26  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_007908  Rfer_4047  3-oxoacyl-(acyl-carrier-protein) reductase  32.44 
 
 
249 aa  119  4.9999999999999996e-26  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_10130  short chain dehydrogenase  36.29 
 
 
238 aa  119  4.9999999999999996e-26  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.0000000000206354  normal  0.858478 
 
 
-
 
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