51 homologs were found in PanDaTox collection
for query gene Ping_0661 on replicon NC_008709
Organism: Psychromonas ingrahamii 37



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008709  Ping_0661  PaaX domain-containing protein, C- domain  100 
 
 
285 aa  595  1e-169  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_3083  PaaX family transcriptional regulator  34.75 
 
 
312 aa  208  1e-52  Serratia proteamaculans 568  Bacteria  normal  normal  0.415086 
 
 
-
 
CP001637  EcDH1_2246  transcriptional regulator, PaaX family  37.06 
 
 
316 aa  197  2.0000000000000003e-49  Escherichia coli DH1  Bacteria  normal  0.218129  n/a   
 
 
-
 
NC_009801  EcE24377A_1585  phenylacetic acid degradation operon negative regulatory protein PaaX  37.06 
 
 
316 aa  196  3e-49  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2256  PaaX family transcriptional regulator  36.36 
 
 
316 aa  194  1e-48  Escherichia coli ATCC 8739  Bacteria  normal  0.203735  normal 
 
 
-
 
NC_009800  EcHS_A1486  phenylacetic acid degradation operon negative regulatory protein PaaX  36.36 
 
 
316 aa  194  1e-48  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_2473  PaaX family transcriptional regulator  32.86 
 
 
334 aa  186  4e-46  Pseudomonas putida F1  Bacteria  normal  0.303711  normal 
 
 
-
 
NC_010501  PputW619_2623  PaaX family transcriptional regulator  32.86 
 
 
334 aa  185  6e-46  Pseudomonas putida W619  Bacteria  normal  0.312733  normal  0.0873289 
 
 
-
 
NC_010322  PputGB1_2610  PaaX family transcriptional regulator  32.51 
 
 
334 aa  185  7e-46  Pseudomonas putida GB-1  Bacteria  normal  0.218497  normal  0.0704814 
 
 
-
 
NC_002947  PP_3286  PaaX family transcriptional regulator  32.51 
 
 
307 aa  184  2.0000000000000003e-45  Pseudomonas putida KT2440  Bacteria  normal  0.17765  normal 
 
 
-
 
NC_009654  Mmwyl1_3103  PaaX family transcriptional regulator  34.36 
 
 
307 aa  174  1.9999999999999998e-42  Marinomonas sp. MWYL1  Bacteria  decreased coverage  0.000000661945  decreased coverage  0.0000397547 
 
 
-
 
NC_011662  Tmz1t_0196  transcriptional regulator, PaaX family  28.22 
 
 
319 aa  150  2e-35  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1521  phenylacetic acid degradation operon negative regulatory protein PaaX  28.98 
 
 
312 aa  149  6e-35  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_1514  transcriptional regulator, PaaX family  29.58 
 
 
316 aa  145  7.0000000000000006e-34  Thauera sp. MZ1T  Bacteria  normal  0.139923  n/a   
 
 
-
 
NC_007298  Daro_0386  phenylacetic acid degradation operon negative regulatory protein PaaX  29.24 
 
 
352 aa  144  1e-33  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.0000000187716  normal  0.0170462 
 
 
-
 
NC_007348  Reut_B3734  phenylacetic acid degradation operon negative regulatory protein PaaX  29.45 
 
 
307 aa  139  4.999999999999999e-32  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0216  PaaX family transcriptional regulator  30.18 
 
 
311 aa  138  1e-31  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.0165647 
 
 
-
 
NC_011894  Mnod_7200  transcriptional regulator, PaaX family  28.07 
 
 
292 aa  131  1.0000000000000001e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.803046  n/a   
 
 
-
 
NC_009485  BBta_2864  phenylacetic acid degradation operon negative regulatory protein paaX  30.36 
 
 
293 aa  130  3e-29  Bradyrhizobium sp. BTAi1  Bacteria  decreased coverage  0.00499823  normal  0.0484276 
 
 
-
 
NC_007925  RPC_0692  phenylacetic acid degradation operon negative regulatory protein PaaX  28.37 
 
 
287 aa  129  7.000000000000001e-29  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.717402  normal 
 
 
-
 
NC_009484  Acry_0094  PaaX family transcriptional regulator  31.34 
 
 
289 aa  122  7e-27  Acidiphilium cryptum JF-5  Bacteria  normal  0.339453  n/a   
 
 
-
 
NC_009720  Xaut_0895  PaaX family transcriptional regulator  25.54 
 
 
305 aa  117  1.9999999999999998e-25  Xanthobacter autotrophicus Py2  Bacteria  normal  0.947925  normal 
 
 
-
 
NC_013411  GYMC61_2859  transcriptional regulator, PaaX family  28.02 
 
 
285 aa  115  7.999999999999999e-25  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013411  GYMC61_2835  transcriptional regulator, PaaX family  24.71 
 
 
285 aa  115  1.0000000000000001e-24  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009620  Smed_4146  PaaX family transcriptional regulator  26.37 
 
 
305 aa  100  2e-20  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.85173 
 
 
-
 
NC_013131  Caci_2009  transcriptional regulator, PaaX family  25.29 
 
 
281 aa  100  3e-20  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.429433  normal 
 
 
-
 
NC_013739  Cwoe_2150  transcriptional regulator, PaaX family  26.62 
 
 
289 aa  99  9e-20  Conexibacter woesei DSM 14684  Bacteria  normal  0.933136  normal  0.276366 
 
 
-
 
NC_014165  Tbis_1609  PaaX family transcriptional regulator  28.23 
 
 
258 aa  96.7  4e-19  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_3357  transcriptional regulator, PaaX family  23.34 
 
 
301 aa  95.9  6e-19  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008688  Pden_4812  PaaX domain-containing protein  25.53 
 
 
284 aa  95.1  1e-18  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.33483 
 
 
-
 
NC_013093  Amir_0787  transcriptional regulator, PaaX family  25.65 
 
 
268 aa  93.2  5e-18  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_0294  transcriptional regulator, PaaX family  22.45 
 
 
318 aa  89.7  5e-17  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0429653  hitchhiker  0.0000864342 
 
 
-
 
NC_013159  Svir_19070  phenylacetic acid-responsive transcriptional repressor  25 
 
 
292 aa  87  3e-16  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0202563  normal 
 
 
-
 
NC_013947  Snas_0703  transcriptional regulator, PaaX family  23.83 
 
 
259 aa  85.5  8e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_0655  PaaX family transcriptional regulator  22.84 
 
 
272 aa  85.1  0.000000000000001  Salinispora arenicola CNS-205  Bacteria  normal  0.0748596  hitchhiker  0.00291671 
 
 
-
 
NC_009380  Strop_0708  PaaX family transcriptional regulator  22.84 
 
 
272 aa  84  0.000000000000003  Salinispora tropica CNB-440  Bacteria  normal  0.719013  normal  0.640912 
 
 
-
 
NC_009921  Franean1_1685  PaaX family transcriptional regulator  22.26 
 
 
333 aa  80.5  0.00000000000003  Frankia sp. EAN1pec  Bacteria  normal  0.0710641  normal  0.260669 
 
 
-
 
NC_013946  Mrub_2629  PaaX family transcriptional regulator  23.79 
 
 
259 aa  78.2  0.0000000000001  Meiothermus ruber DSM 1279  Bacteria  normal  0.495501  normal 
 
 
-
 
NC_013595  Sros_8420  putative transcriptional regulator, PaaX family  23.31 
 
 
260 aa  77.4  0.0000000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.289328  normal 
 
 
-
 
NC_014212  Mesil_0980  transcriptional regulator, PaaX family  22.01 
 
 
259 aa  76.3  0.0000000000005  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.148761 
 
 
-
 
NC_008699  Noca_1206  PaaX domain-containing protein, C- domain  21.28 
 
 
258 aa  75.1  0.000000000001  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_0309  transcriptional regulator, PaaX family  23.55 
 
 
302 aa  73.9  0.000000000003  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_4899  transcriptional regulator, PaaX family  23.99 
 
 
276 aa  73.6  0.000000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.425131  normal 
 
 
-
 
NC_009956  Dshi_3828  PaaX family transcriptional regulator  24.18 
 
 
264 aa  70.9  0.00000000003  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.648927  normal 
 
 
-
 
NC_013235  Namu_0588  transcriptional regulator, PaaX family  22.22 
 
 
276 aa  68.2  0.0000000001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_5523  transcriptional regulator, PaaX family  22.61 
 
 
267 aa  65.5  0.0000000009  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.543092 
 
 
-
 
NC_014151  Cfla_2025  transcriptional regulator, PaaX family  22.1 
 
 
306 aa  62.4  0.000000009  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_6455  transcriptional regulator, PaaX family  19.58 
 
 
260 aa  55.1  0.000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_0659  PaaX-like  21.15 
 
 
265 aa  54.3  0.000002  Jannaschia sp. CCS1  Bacteria  normal  0.702789  normal 
 
 
-
 
NC_014151  Cfla_0289  transcriptional regulator, PaaX family  21.51 
 
 
280 aa  54.7  0.000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.010887  hitchhiker  0.0000784974 
 
 
-
 
NC_008044  TM1040_0436  PaaX-like  27.59 
 
 
301 aa  53.5  0.000004  Ruegeria sp. TM1040  Bacteria  normal  normal  0.581976 
 
 
-
 
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