More than 300 homologs were found in PanDaTox collection
for query gene Pfl01_1398 on replicon NC_007492
Organism: Pseudomonas fluorescens Pf0-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007492  Pfl01_1398  cyclic nucleotide-binding protein  100 
 
 
157 aa  320  6e-87  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.908167  normal 
 
 
-
 
NC_007005  Psyr_1573  cyclic nucleotide-binding  70.89 
 
 
158 aa  231  2.0000000000000002e-60  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.490025  hitchhiker  0.00990577 
 
 
-
 
NC_010501  PputW619_3891  cyclic nucleotide-binding protein  71.52 
 
 
155 aa  222  1e-57  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_3912  cyclic nucleotide-binding protein  72.22 
 
 
144 aa  221  4e-57  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.262178  n/a   
 
 
-
 
NC_009439  Pmen_1780  cyclic nucleotide-binding protein  61.29 
 
 
156 aa  199  9.999999999999999e-51  Pseudomonas mendocina ymp  Bacteria  normal  0.489231  normal 
 
 
-
 
NC_012918  GM21_1866  putative transcriptional regulator, Crp/Fnr family  33.57 
 
 
182 aa  81.3  0.000000000000005  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  32.87 
 
 
251 aa  80.5  0.000000000000007  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_007498  Pcar_0452  cAMP-binding protein  31.54 
 
 
160 aa  78.2  0.00000000000004  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.000000000045265  n/a   
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  30.37 
 
 
228 aa  77.4  0.00000000000007  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  30.53 
 
 
228 aa  77.4  0.00000000000007  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  36.28 
 
 
225 aa  77.4  0.00000000000008  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_007298  Daro_1294  cyclic nucleotide-binding: regulatory protein, Crp  33.58 
 
 
220 aa  76.6  0.0000000000001  Dechloromonas aromatica RCB  Bacteria  normal  0.957461  normal  0.413121 
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  34.82 
 
 
231 aa  76.3  0.0000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  36.28 
 
 
225 aa  76.6  0.0000000000001  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  29.46 
 
 
226 aa  76.3  0.0000000000002  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_008786  Veis_1689  cyclic nucleotide-binding protein  28.36 
 
 
212 aa  74.7  0.0000000000004  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.792602 
 
 
-
 
NC_009484  Acry_2102  CRP/FNR family transcriptional regulator  31.91 
 
 
227 aa  73.2  0.000000000001  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  29.66 
 
 
225 aa  72.4  0.000000000002  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  35.04 
 
 
224 aa  71.2  0.000000000005  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  29.79 
 
 
226 aa  70.1  0.00000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_011992  Dtpsy_0411  cyclic nucleotide-binding protein  31.15 
 
 
209 aa  69.7  0.00000000001  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_2129  Crp/Fnr family transcriptional regulator  35.04 
 
 
225 aa  69.7  0.00000000001  Meiothermus ruber DSM 1279  Bacteria  normal  0.185639  normal  0.344505 
 
 
-
 
NC_008782  Ajs_0419  cyclic nucleotide-binding protein  31.15 
 
 
209 aa  69.7  0.00000000002  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  28.97 
 
 
242 aa  68.9  0.00000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  31.01 
 
 
225 aa  69.3  0.00000000002  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  28.15 
 
 
228 aa  68.9  0.00000000003  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3692  cyclic nucleotide-binding domain-containing protein  37.89 
 
 
146 aa  68.2  0.00000000005  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  30.22 
 
 
225 aa  67.8  0.00000000006  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_4460  putative transcriptional regulator, Crp/Fnr family  36.52 
 
 
171 aa  67.4  0.00000000007  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_2845  cyclic nucleotide-binding domain-containing protein  28.47 
 
 
226 aa  67.4  0.00000000007  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  32.14 
 
 
220 aa  67  0.00000000008  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_009485  BBta_0559  Crp/FNR family transcriptional regulator  34.02 
 
 
225 aa  67.4  0.00000000008  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.338488  normal  0.42035 
 
 
-
 
NC_007947  Mfla_1926  cyclic nucleotide-binding domain-containing protein  35 
 
 
168 aa  67  0.00000000008  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_2531  cyclic nucleotide-binding domain-containing protein  28.68 
 
 
226 aa  67.4  0.00000000008  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  29.08 
 
 
226 aa  66.6  0.0000000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_013440  Hoch_6450  putative transcriptional regulator, Crp/Fnr family  32.17 
 
 
253 aa  66.6  0.0000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_002967  TDE2725  cyclic nucleotide binding/GGDEF domain-containing protein  29.33 
 
 
322 aa  66.6  0.0000000001  Treponema denticola ATCC 35405  Bacteria  normal  0.792666  n/a   
 
 
-
 
NC_011894  Mnod_7320  cyclic nucleotide-binding protein  29.86 
 
 
169 aa  67  0.0000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.376819  n/a   
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  35.51 
 
 
225 aa  66.6  0.0000000001  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_011831  Cagg_0772  cyclic nucleotide-binding protein  29.85 
 
 
164 aa  67  0.0000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_0636  cyclic nucleotide-binding protein  30.33 
 
 
212 aa  65.9  0.0000000002  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  29.84 
 
 
247 aa  65.5  0.0000000002  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_0277  cyclic nucleotide-binding protein  31.36 
 
 
210 aa  65.9  0.0000000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  31.21 
 
 
225 aa  65.9  0.0000000002  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_4039  cyclic nucleotide-binding protein  29.17 
 
 
161 aa  65.9  0.0000000002  Methylobacterium sp. 4-46  Bacteria  normal  0.17311  normal 
 
 
-
 
NC_013730  Slin_5025  putative transcriptional regulator, Crp/Fnr family  36.89 
 
 
1056 aa  65.5  0.0000000002  Spirosoma linguale DSM 74  Bacteria  decreased coverage  0.00524189  normal 
 
 
-
 
NC_010002  Daci_1067  cyclic nucleotide-binding protein  33.58 
 
 
210 aa  65.9  0.0000000002  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.314176 
 
 
-
 
NC_013440  Hoch_3831  cyclic nucleotide-binding protein  33.93 
 
 
435 aa  65.5  0.0000000003  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0387698 
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  33.05 
 
 
224 aa  65.5  0.0000000003  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  32.17 
 
 
226 aa  65.5  0.0000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  28.57 
 
 
243 aa  65.1  0.0000000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_014212  Mesil_2074  transcriptional regulator, Crp/Fnr family  32.48 
 
 
225 aa  64.7  0.0000000005  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.971908 
 
 
-
 
NC_013721  HMPREF0424_0303  cyclic nucleotide-binding domain protein  29.13 
 
 
236 aa  64.3  0.0000000006  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.232206 
 
 
-
 
NC_009511  Swit_2706  Crp/FNR family transcriptional regulator  28.57 
 
 
228 aa  63.9  0.0000000007  Sphingomonas wittichii RW1  Bacteria  normal  0.154877  normal 
 
 
-
 
NC_013161  Cyan8802_3370  putative transcriptional regulator, Crp/Fnr family  35.9 
 
 
425 aa  63.9  0.0000000008  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5607  cAMP-dependent protein kinase regulatory subunit  30.46 
 
 
154 aa  63.9  0.0000000008  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_2905  cyclic nucleotide-binding protein  30.14 
 
 
157 aa  63.9  0.0000000008  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0600936 
 
 
-
 
NC_011726  PCC8801_2732  cyclic nucleotide-binding protein  35.9 
 
 
425 aa  63.9  0.0000000008  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009511  Swit_0590  cyclic nucleotide-binding protein  33.94 
 
 
801 aa  63.5  0.000000001  Sphingomonas wittichii RW1  Bacteria  normal  0.120802  normal 
 
 
-
 
NC_007908  Rfer_3511  Crp/FNR family transcriptional regulator  33.33 
 
 
233 aa  63.2  0.000000001  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  33.33 
 
 
219 aa  63.2  0.000000001  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  24.46 
 
 
224 aa  62.4  0.000000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A3460  cyclic nucleotide-binding domain-containing protein  40.57 
 
 
644 aa  62.8  0.000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_1954  putative Crp/Fnr family transcriptional regulator  35.79 
 
 
141 aa  62.8  0.000000002  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  35.96 
 
 
225 aa  62.8  0.000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_008346  Swol_1598  hypothetical protein  31.25 
 
 
407 aa  62.8  0.000000002  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.303519  n/a   
 
 
-
 
NC_009972  Haur_0049  Crp/FNR family transcriptional regulator  31.79 
 
 
252 aa  62.8  0.000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.422683  n/a   
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  30.09 
 
 
225 aa  62  0.000000003  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3203  cyclic nucleotide-binding protein  36.61 
 
 
165 aa  62  0.000000003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  30.43 
 
 
226 aa  62  0.000000003  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  31.39 
 
 
226 aa  61.6  0.000000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_010814  Glov_2303  MscS Mechanosensitive ion channel  33.9 
 
 
512 aa  61.6  0.000000004  Geobacter lovleyi SZ  Bacteria  normal  0.697138  n/a   
 
 
-
 
NC_008025  Dgeo_0106  Crp/FNR family transcriptional regulator  29.66 
 
 
254 aa  61.6  0.000000004  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_0343  cyclic nucleotide-binding protein  34.91 
 
 
811 aa  61.6  0.000000004  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.0783507  normal 
 
 
-
 
NC_013440  Hoch_3345  cyclic nucleotide-binding protein  31.06 
 
 
417 aa  61.6  0.000000004  Haliangium ochraceum DSM 14365  Bacteria  normal  0.254717  normal 
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  26.43 
 
 
231 aa  61.2  0.000000005  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_008609  Ppro_2444  Crp/FNR family transcriptional regulator  30.69 
 
 
238 aa  61.2  0.000000005  Pelobacter propionicus DSM 2379  Bacteria  decreased coverage  0.000577484  n/a   
 
 
-
 
NC_011145  AnaeK_2607  cyclic nucleotide-binding protein  32.73 
 
 
215 aa  61.2  0.000000005  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0079  hypothetical protein  31.03 
 
 
169 aa  60.8  0.000000006  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.26747 
 
 
-
 
NC_009380  Strop_3269  CRP/FNR family transcriptional regulator  30.19 
 
 
230 aa  60.8  0.000000007  Salinispora tropica CNB-440  Bacteria  normal  0.883713  normal 
 
 
-
 
NC_007948  Bpro_0234  cyclic nucleotide-binding domain-containing protein  29.75 
 
 
186 aa  60.8  0.000000007  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_0306  cyclic nucleotide-binding protein  34.48 
 
 
166 aa  60.5  0.000000008  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_3499  Crp/FNR family transcriptional regulator  30.19 
 
 
230 aa  60.5  0.000000008  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00506626 
 
 
-
 
NC_008048  Sala_1169  Crp/FNR family transcriptional regulator  30 
 
 
227 aa  60.5  0.000000009  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.0303416  normal  0.0506186 
 
 
-
 
NC_013440  Hoch_5417  cyclic nucleotide-binding protein  30 
 
 
419 aa  60.5  0.00000001  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0881735  normal  0.0681678 
 
 
-
 
NC_011891  A2cp1_2700  cyclic nucleotide-binding protein  32.73 
 
 
215 aa  59.7  0.00000001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  hitchhiker  0.00108848  n/a   
 
 
-
 
NC_013131  Caci_8903  transcriptional regulator, Crp/Fnr family  34.31 
 
 
224 aa  60.1  0.00000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  27.08 
 
 
226 aa  60.5  0.00000001  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_007643  Rru_A0496  cyclic nucleotide-binding domain-containing protein  32.69 
 
 
129 aa  60.1  0.00000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_0718  cyclic nucleotide-binding  33.04 
 
 
747 aa  60.1  0.00000001  Polaromonas sp. JS666  Bacteria  hitchhiker  0.00567448  normal 
 
 
-
 
NC_013235  Namu_0718  transcriptional regulator, Crp/Fnr family  28.81 
 
 
224 aa  60.1  0.00000001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_4944  cyclic nucleotide-binding protein  33.68 
 
 
454 aa  59.7  0.00000001  Trichodesmium erythraeum IMS101  Bacteria  normal  0.0658137  normal 
 
 
-
 
NC_013422  Hneap_1461  putative transcriptional regulator, Crp/Fnr family  33.04 
 
 
159 aa  60.1  0.00000001  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A0894  cyclic nucleotide-binding  29.57 
 
 
226 aa  58.9  0.00000002  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010816  BLD_0979  cAMP-binding protein  27.56 
 
 
239 aa  59.3  0.00000002  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_0296  cyclic nucleotide-binding protein  31.25 
 
 
624 aa  58.9  0.00000002  Frankia sp. EAN1pec  Bacteria  normal  normal  0.339618 
 
 
-
 
NC_013037  Dfer_1108  putative transcriptional regulator, Crp/Fnr family  30.97 
 
 
1075 aa  58.9  0.00000002  Dyadobacter fermentans DSM 18053  Bacteria  decreased coverage  0.000733786  normal  0.267995 
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  27.54 
 
 
228 aa  58.9  0.00000002  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_007760  Adeh_1256  cyclic nucleotide-binding domain-containing protein  32.11 
 
 
215 aa  58.5  0.00000003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_1342  cyclic nucleotide-binding  30.25 
 
 
731 aa  58.5  0.00000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0631571 
 
 
-
 
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