19 homologs were found in PanDaTox collection
for query gene Pecwa_1081 on replicon NC_013421
Organism: Pectobacterium wasabiae WPP163



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013421  Pecwa_1081  type VI secretion-associated protein, VC_A0118 family  100 
 
 
186 aa  375  1e-103  Pectobacterium wasabiae WPP163  Bacteria  normal  0.212059  n/a   
 
 
-
 
NC_012917  PC1_3244  type VI secretion-associated protein, VC_A0118 family  91.94 
 
 
186 aa  350  8.999999999999999e-96  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2796  type VI secretion-associated protein, VC_A0118 family  71.12 
 
 
187 aa  282  2.0000000000000002e-75  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_0397  hypothetical protein  33.16 
 
 
228 aa  88.2  6e-17  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_0324  hypothetical protein  33.16 
 
 
228 aa  88.2  6e-17  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_0230  type VI secretion-associated protein  32.31 
 
 
247 aa  81.3  0.000000000000008  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_0236  type VI secretion-associated protein, VC_A0118 family  32.31 
 
 
247 aa  81.3  0.000000000000008  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A0228  type VI secretion-associated protein  32.31 
 
 
247 aa  81.3  0.000000000000008  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A1220  type VI secretion-associated protein  30.57 
 
 
245 aa  76.3  0.0000000000003  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.225071 
 
 
-
 
NC_011149  SeAg_B1101  type VI secretion-associated protein, family  29.53 
 
 
240 aa  73.6  0.000000000001  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_1207  hypothetical protein  27.53 
 
 
208 aa  61.6  0.000000007  Marinomonas sp. MWYL1  Bacteria  normal  0.131804  normal 
 
 
-
 
NC_010506  Swoo_2518  hypothetical protein  28.68 
 
 
213 aa  56.6  0.0000002  Shewanella woodyi ATCC 51908  Bacteria  normal  0.356894  normal 
 
 
-
 
NC_008340  Mlg_0055  hypothetical protein  39.62 
 
 
215 aa  56.6  0.0000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_3722  hypothetical protein  28.88 
 
 
211 aa  55.1  0.0000006  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_4073  hypothetical protein  33.33 
 
 
210 aa  53.9  0.000001  Pseudomonas putida KT2440  Bacteria  decreased coverage  0.0000242305  unclonable  0.000000767708 
 
 
-
 
NC_010322  PputGB1_3223  hypothetical protein  26.8 
 
 
245 aa  48.1  0.00007  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2625  hypothetical protein  29.13 
 
 
231 aa  46.2  0.0003  Pseudomonas putida KT2440  Bacteria  normal  0.0930026  normal 
 
 
-
 
NC_009512  Pput_2128  hypothetical protein  29.13 
 
 
216 aa  45.8  0.0003  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0019  hypothetical protein  28.71 
 
 
227 aa  45.1  0.0005  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
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