More than 300 homologs were found in PanDaTox collection
for query gene Pecwa_1008 on replicon NC_013421
Organism: Pectobacterium wasabiae WPP163



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013421  Pecwa_1008  two component transcriptional regulator, winged helix family  100 
 
 
226 aa  457  9.999999999999999e-129  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0771  two component transcriptional regulator, winged helix family  94.69 
 
 
226 aa  435  1e-121  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  unclonable  0.0000423816  n/a   
 
 
-
 
NC_012912  Dd1591_3275  two component transcriptional regulator, winged helix family  78.76 
 
 
232 aa  369  1e-101  Dickeya zeae Ech1591  Bacteria  decreased coverage  0.000116561  n/a   
 
 
-
 
NC_012880  Dd703_3195  two component transcriptional regulator, winged helix family  78.32 
 
 
226 aa  366  1e-100  Dickeya dadantii Ech703  Bacteria  normal  0.688912  n/a   
 
 
-
 
NC_009708  YpsIP31758_1313  transcriptional regulatory protein CpxR  77.97 
 
 
227 aa  363  1e-100  Yersinia pseudotuberculosis IP 31758  Bacteria  unclonable  5.186950000000001e-18  n/a   
 
 
-
 
NC_010159  YpAngola_A2753  transcriptional regulatory protein CpxR  77.97 
 
 
227 aa  363  1e-99  Yersinia pestis Angola  Bacteria  hitchhiker  0.00000000494292  normal 
 
 
-
 
NC_010465  YPK_1424  two component transcriptional regulator  77.97 
 
 
227 aa  363  1e-99  Yersinia pseudotuberculosis YPIII  Bacteria  hitchhiker  0.00122466  n/a   
 
 
-
 
NC_009832  Spro_3452  two component transcriptional regulator  77.88 
 
 
226 aa  357  9.999999999999999e-98  Serratia proteamaculans 568  Bacteria  normal  hitchhiker  0.00186092 
 
 
-
 
NC_007947  Mfla_0716  two component transcriptional regulator  51.97 
 
 
233 aa  230  1e-59  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0704  response regulator receiver:transcriptional regulatory protein, C-terminal  51.77 
 
 
226 aa  226  2e-58  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.710027 
 
 
-
 
NC_012560  Avin_31150  Response regulator  52.68 
 
 
249 aa  226  2e-58  Azotobacter vinelandii DJ  Bacteria  normal  0.152443  n/a   
 
 
-
 
NC_008781  Pnap_2970  two component transcriptional regulator  51.09 
 
 
230 aa  226  2e-58  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.068725 
 
 
-
 
NC_006368  lpp1393  transcriptional regulatory protein CpxR  50 
 
 
226 aa  224  8e-58  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1603  transcriptional regulatory protein CpxR  50 
 
 
226 aa  223  1e-57  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_003296  RS03088  two-component response regulator transcription regulator protein  51.12 
 
 
246 aa  220  1.9999999999999999e-56  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.25081 
 
 
-
 
NC_011981  Avi_7488  two component response regulator  48.21 
 
 
228 aa  219  1.9999999999999999e-56  Agrobacterium vitis S4  Bacteria  normal  0.461205  n/a   
 
 
-
 
NC_010322  PputGB1_2572  two component transcriptional regulator  52.68 
 
 
230 aa  219  1.9999999999999999e-56  Pseudomonas putida GB-1  Bacteria  normal  normal  0.186253 
 
 
-
 
NC_009512  Pput_2386  two component transcriptional regulator  51.54 
 
 
253 aa  215  5e-55  Pseudomonas putida F1  Bacteria  normal  0.3038  normal 
 
 
-
 
NC_007005  Psyr_3793  response regulator receiver:transcriptional regulatory protein, C-terminal  50.9 
 
 
229 aa  214  9.999999999999999e-55  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  hitchhiker  0.001028 
 
 
-
 
NC_007484  Noc_0676  two comoponent transcriptional regulator  47.56 
 
 
231 aa  213  1.9999999999999998e-54  Nitrosococcus oceani ATCC 19707  Bacteria  hitchhiker  0.00000000021656  n/a   
 
 
-
 
NC_012854  Rleg_6517  two component transcriptional regulator, winged helix family  47.32 
 
 
228 aa  213  1.9999999999999998e-54  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0325894 
 
 
-
 
NC_002947  PP_3372  winged helix family two component transcriptional regulator  51.1 
 
 
233 aa  212  2.9999999999999995e-54  Pseudomonas putida KT2440  Bacteria  normal  0.690812  normal  0.187928 
 
 
-
 
NC_010814  Glov_0050  two component transcriptional regulator, winged helix family  48 
 
 
235 aa  211  7e-54  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_6145  two component response regulator  48.42 
 
 
229 aa  210  1e-53  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_4460  two component transcriptional regulator  45.95 
 
 
230 aa  205  5e-52  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.94443  normal 
 
 
-
 
NC_011368  Rleg2_4371  two component transcriptional regulator, winged helix family  45.98 
 
 
228 aa  204  7e-52  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3185  two component transcriptional regulator  48.65 
 
 
231 aa  204  1e-51  Magnetococcus sp. MC-1  Bacteria  normal  0.729743  normal 
 
 
-
 
NC_008740  Maqu_2869  two component transcriptional regulator  47.75 
 
 
222 aa  201  9e-51  Marinobacter aquaeolei VT8  Bacteria  normal  0.643015  n/a   
 
 
-
 
NC_002977  MCA2279  DNA-binding response regulator  47.06 
 
 
238 aa  200  9.999999999999999e-51  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2625  two component transcriptional regulator  45.74 
 
 
232 aa  199  1.9999999999999998e-50  Marinomonas sp. MWYL1  Bacteria  normal  unclonable  0.00000000000561273 
 
 
-
 
NC_011138  MADE_00938  transcriptional regulatory protein CpxR  45.54 
 
 
236 aa  194  1e-48  Alteromonas macleodii 'Deep ecotype'  Bacteria  unclonable  0.00000268904  n/a   
 
 
-
 
NC_011138  MADE_00535  Transcriptional regulatory protein CpxR  43.81 
 
 
247 aa  191  1e-47  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.774728  n/a   
 
 
-
 
NC_008228  Patl_2301  two component transcriptional regulator  42.06 
 
 
244 aa  190  2e-47  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.00025805  n/a   
 
 
-
 
NC_011769  DvMF_1624  two component transcriptional regulator, winged helix family  43.82 
 
 
278 aa  188  5.999999999999999e-47  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007802  Jann_2014  two component transcriptional regulator  45.74 
 
 
239 aa  186  3e-46  Jannaschia sp. CCS1  Bacteria  normal  normal  0.193015 
 
 
-
 
NC_008345  Sfri_0311  two component transcriptional regulator, winged helix family protein  42.99 
 
 
228 aa  185  4e-46  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00012342  n/a   
 
 
-
 
NC_013456  VEA_002219  copper-sensing two-component system response regulator CpxR  42.79 
 
 
229 aa  184  1.0000000000000001e-45  Vibrio sp. Ex25  Bacteria  unclonable  0.0000000572967  n/a   
 
 
-
 
NC_007760  Adeh_2914  two component transcriptional regulator  45.91 
 
 
245 aa  183  2.0000000000000003e-45  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.634998  n/a   
 
 
-
 
NC_008228  Patl_0987  two component transcriptional regulator  42.92 
 
 
235 aa  182  3e-45  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000260123  n/a   
 
 
-
 
NC_009654  Mmwyl1_1562  two component transcriptional regulator  42.79 
 
 
228 aa  182  4.0000000000000006e-45  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00000591425  unclonable  0.00000000000208218 
 
 
-
 
NC_011891  A2cp1_3106  two component transcriptional regulator, winged helix family  45.45 
 
 
234 aa  181  6e-45  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3000  two component transcriptional regulator, winged helix family  45.45 
 
 
234 aa  181  8.000000000000001e-45  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I2797  transcriptional regulator, CpxR  44.34 
 
 
227 aa  179  2.9999999999999997e-44  Aliivibrio salmonicida LFI1238  Bacteria  unclonable  0.0000288823  n/a   
 
 
-
 
NC_009783  VIBHAR_00149  transcriptional regulator CpxR  41.18 
 
 
229 aa  179  2.9999999999999997e-44  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009457  VC0395_A2264  transcriptional regulator CpxR  41.44 
 
 
228 aa  179  4e-44  Vibrio cholerae O395  Bacteria  unclonable  0.000000000000005667  n/a   
 
 
-
 
NC_010322  PputGB1_4009  two component transcriptional regulator  44.84 
 
 
225 aa  179  4e-44  Pseudomonas putida GB-1  Bacteria  normal  0.597595  hitchhiker  0.0000110419 
 
 
-
 
NC_013170  Ccur_11690  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  44.84 
 
 
236 aa  178  4.999999999999999e-44  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.52451  normal 
 
 
-
 
NC_007492  Pfl01_1483  two component transcriptional regulator  44.25 
 
 
225 aa  178  8e-44  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0288957  normal  0.134739 
 
 
-
 
NC_002947  PP_4503  winged helix family two component transcriptional regulator  44.84 
 
 
225 aa  177  1e-43  Pseudomonas putida KT2440  Bacteria  normal  0.0390062  normal 
 
 
-
 
NC_008009  Acid345_3846  two component transcriptional regulator  44 
 
 
229 aa  177  1e-43  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.225052  normal 
 
 
-
 
NC_009512  Pput_1408  two component transcriptional regulator  44.84 
 
 
225 aa  177  1e-43  Pseudomonas putida F1  Bacteria  normal  0.0248977  normal 
 
 
-
 
NC_013165  Shel_00330  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  44.39 
 
 
240 aa  177  2e-43  Slackia heliotrinireducens DSM 20476  Bacteria  decreased coverage  0.00972196  normal 
 
 
-
 
NC_009439  Pmen_1831  two component transcriptional regulator  45.05 
 
 
225 aa  176  3e-43  Pseudomonas mendocina ymp  Bacteria  normal  0.989444  normal  0.522163 
 
 
-
 
NC_012560  Avin_15610  Response regulator, transciptional regulatory protein  44.84 
 
 
225 aa  174  7e-43  Azotobacter vinelandii DJ  Bacteria  normal  0.0572115  n/a   
 
 
-
 
NC_010501  PputW619_3792  two component transcriptional regulator  43.5 
 
 
225 aa  174  8e-43  Pseudomonas putida W619  Bacteria  normal  decreased coverage  0.000000000277452 
 
 
-
 
NC_003910  CPS_1750  transcriptional regulatory protein CpxR  40.79 
 
 
242 aa  174  9e-43  Colwellia psychrerythraea 34H  Bacteria  unclonable  0.000216865  n/a   
 
 
-
 
NC_012917  PC1_0136  DNA-binding transcriptional regulator CpxR  43.75 
 
 
232 aa  174  9.999999999999999e-43  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0128  DNA-binding transcriptional regulator CpxR  43.75 
 
 
232 aa  174  9.999999999999999e-43  Pectobacterium wasabiae WPP163  Bacteria  normal  0.3237  n/a   
 
 
-
 
NC_013203  Apar_1349  two component transcriptional regulator, winged helix family  43.75 
 
 
237 aa  174  9.999999999999999e-43  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.421984 
 
 
-
 
NC_004578  PSPTO_1806  DNA-binding response regulator  44.39 
 
 
225 aa  173  1.9999999999999998e-42  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0070  two component transcriptional regulator  42.22 
 
 
229 aa  173  1.9999999999999998e-42  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.834843 
 
 
-
 
NC_007954  Sden_3461  response regulator receiver  42.99 
 
 
226 aa  173  1.9999999999999998e-42  Shewanella denitrificans OS217  Bacteria  decreased coverage  0.000000000124466  n/a   
 
 
-
 
NC_008700  Sama_3432  response regulator receiver protein  45.74 
 
 
228 aa  173  1.9999999999999998e-42  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0000345172  normal  0.351937 
 
 
-
 
NC_009901  Spea_3933  two component transcriptional regulator  44.8 
 
 
227 aa  173  1.9999999999999998e-42  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.0000000956729  n/a   
 
 
-
 
NC_010571  Oter_0318  two component transcriptional regulator  44.8 
 
 
241 aa  172  2.9999999999999996e-42  Opitutus terrae PB90-1  Bacteria  normal  0.523003  normal  0.212939 
 
 
-
 
NC_008463  PA14_22760  putative two-component response regulator  44.2 
 
 
225 aa  172  2.9999999999999996e-42  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.0539892 
 
 
-
 
NC_013204  Elen_0258  two component transcriptional regulator, winged helix family  43.5 
 
 
236 aa  172  2.9999999999999996e-42  Eggerthella lenta DSM 2243  Bacteria  normal  0.606292  normal 
 
 
-
 
NC_011892  Mnod_8578  two component transcriptional regulator, winged helix family  41.63 
 
 
231 aa  172  3.9999999999999995e-42  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0565107  n/a   
 
 
-
 
NC_009656  PSPA7_1922  putative two-component response regulator  44.2 
 
 
225 aa  172  3.9999999999999995e-42  Pseudomonas aeruginosa PA7  Bacteria  normal  0.804247  n/a   
 
 
-
 
NC_011083  SeHA_C4390  DNA-binding transcriptional regulator CpxR  44.25 
 
 
232 aa  172  5e-42  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.918423  normal 
 
 
-
 
NC_011205  SeD_A4457  DNA-binding transcriptional regulator CpxR  44.25 
 
 
232 aa  172  5e-42  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A4276  DNA-binding transcriptional regulator CpxR  44.25 
 
 
232 aa  172  5e-42  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.85215 
 
 
-
 
NC_011080  SNSL254_A4346  DNA-binding transcriptional regulator CpxR  44.25 
 
 
232 aa  172  5e-42  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.591439  hitchhiker  0.0000000817459 
 
 
-
 
NC_011149  SeAg_B4305  DNA-binding transcriptional regulator CpxR  44.25 
 
 
232 aa  172  5e-42  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_0880  two component transcriptional regulator  46.15 
 
 
234 aa  171  5.999999999999999e-42  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.220279 
 
 
-
 
CP001509  ECD_03798  DNA-binding response regulator in two-component regulatory system with CpxA  44.69 
 
 
232 aa  171  6.999999999999999e-42  Escherichia coli BL21(DE3)  Bacteria  normal  0.0579105  n/a   
 
 
-
 
CP001637  EcDH1_4072  two component transcriptional regulator, winged helix family  44.69 
 
 
232 aa  171  6.999999999999999e-42  Escherichia coli DH1  Bacteria  normal  0.476785  n/a   
 
 
-
 
NC_010468  EcolC_4105  DNA-binding transcriptional regulator CpxR  44.69 
 
 
232 aa  171  6.999999999999999e-42  Escherichia coli ATCC 8739  Bacteria  normal  0.393063  normal 
 
 
-
 
NC_009800  EcHS_A4143  DNA-binding transcriptional regulator CpxR  44.69 
 
 
232 aa  171  6.999999999999999e-42  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_4446  DNA-binding transcriptional regulator CpxR  44.69 
 
 
232 aa  171  6.999999999999999e-42  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_5367  DNA-binding transcriptional regulator CpxR  44.69 
 
 
232 aa  171  6.999999999999999e-42  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E4392  DNA-binding transcriptional regulator CpxR  44.69 
 
 
232 aa  171  6.999999999999999e-42  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_03747  hypothetical protein  44.69 
 
 
232 aa  171  6.999999999999999e-42  Escherichia coli BL21  Bacteria  normal  0.0830559  n/a   
 
 
-
 
NC_010498  EcSMS35_4305  DNA-binding transcriptional regulator CpxR  44.69 
 
 
232 aa  171  6.999999999999999e-42  Escherichia coli SMS-3-5  Bacteria  normal  0.0517203  normal  0.0145886 
 
 
-
 
NC_009524  PsycPRwf_0319  two component transcriptional regulator  43.75 
 
 
223 aa  171  7.999999999999999e-42  Psychrobacter sp. PRwf-1  Bacteria  decreased coverage  0.000000000369721  hitchhiker  0.00000000968682 
 
 
-
 
NC_010511  M446_3564  two component transcriptional regulator  41.44 
 
 
230 aa  169  3e-41  Methylobacterium sp. 4-46  Bacteria  normal  0.153344  normal  0.125376 
 
 
-
 
NC_009436  Ent638_4060  DNA-binding transcriptional regulator CpxR  43.36 
 
 
232 aa  169  3e-41  Enterobacter sp. 638  Bacteria  decreased coverage  0.00000252632  normal 
 
 
-
 
NC_012791  Vapar_0259  two component transcriptional regulator, winged helix family  41.15 
 
 
240 aa  169  4e-41  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_4562  two component transcriptional regulator  45.09 
 
 
247 aa  168  6e-41  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.488322  normal  0.0982939 
 
 
-
 
NC_009253  Dred_1903  two component transcriptional regulator  40.18 
 
 
230 aa  168  7e-41  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2643  two component transcriptional regulator  43.3 
 
 
236 aa  168  8e-41  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3589  response regulator receiver:transcriptional regulatory protein, C-terminal  43.95 
 
 
225 aa  167  1e-40  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.110518  normal  0.715571 
 
 
-
 
NC_009831  Ssed_0279  two component transcriptional regulator  42.79 
 
 
227 aa  167  1e-40  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000622263  unclonable  0.000000000101633 
 
 
-
 
NC_009708  YpsIP31758_0084  DNA-binding transcriptional regulator CpxR  42.22 
 
 
232 aa  166  2e-40  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.601085  n/a   
 
 
-
 
NC_010465  YPK_4132  DNA-binding transcriptional regulator CpxR  42.22 
 
 
232 aa  166  2e-40  Yersinia pseudotuberculosis YPIII  Bacteria  decreased coverage  0.0000000494358  n/a   
 
 
-
 
NC_010159  YpAngola_A0081  DNA-binding transcriptional regulator CpxR  42.22 
 
 
232 aa  166  2e-40  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_4810  DNA-binding transcriptional regulator CpxR  43.75 
 
 
232 aa  166  2.9999999999999998e-40  Serratia proteamaculans 568  Bacteria  normal  hitchhiker  0.000617218 
 
 
-
 
NC_008781  Pnap_2740  two component transcriptional regulator  44.25 
 
 
231 aa  166  2.9999999999999998e-40  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.307567  normal  0.0284463 
 
 
-
 
NC_007908  Rfer_0510  two component transcriptional regulator  42.04 
 
 
234 aa  166  4e-40  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_1223  two component transcriptional regulator  43.23 
 
 
230 aa  165  4e-40  Psychrobacter cryohalolentis K5  Bacteria  normal  0.140258  normal  0.151028 
 
 
-
 
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