More than 300 homologs were found in PanDaTox collection
for query gene Pden_4756 on replicon NC_008688
Organism: Paracoccus denitrificans PD1222



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008688  Pden_4756  AsnC family transcriptional regulator  100 
 
 
165 aa  332  9e-91  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B4242  AsnC family transcriptional regulator  61.59 
 
 
176 aa  201  3e-51  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_4561  AsnC family transcriptional regulator  60.26 
 
 
156 aa  198  3e-50  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00127893  normal  0.163186 
 
 
-
 
NC_010623  Bphy_3954  AsnC family transcriptional regulator  58.94 
 
 
152 aa  194  3e-49  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B0435  AsnC family transcriptional regulator  53.25 
 
 
157 aa  182  2.0000000000000003e-45  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_7223  transcriptional regulator, AsnC family  54.3 
 
 
160 aa  182  2.0000000000000003e-45  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B1713  AsnC family transcriptional regulator  53.33 
 
 
160 aa  179  1e-44  Burkholderia sp. 383  Bacteria  normal  0.911969  normal 
 
 
-
 
NC_010086  Bmul_4306  AsnC family transcriptional regulator  54 
 
 
160 aa  179  2e-44  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.269184 
 
 
-
 
NC_008543  Bcen2424_4300  AsnC family transcriptional regulator  54 
 
 
160 aa  178  2e-44  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4066  AsnC family transcriptional regulator  54 
 
 
160 aa  178  2e-44  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_3217  AsnC family transcriptional regulator  54 
 
 
160 aa  178  2e-44  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2906  AsnC family transcriptional regulator  55.06 
 
 
168 aa  178  2.9999999999999997e-44  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4195  AsnC family transcriptional regulator  54 
 
 
160 aa  177  5.999999999999999e-44  Burkholderia ambifaria MC40-6  Bacteria  normal  0.203034  normal  0.136531 
 
 
-
 
NC_008391  Bamb_3718  AsnC family transcriptional regulator  54 
 
 
160 aa  177  5.999999999999999e-44  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.531548 
 
 
-
 
NC_008752  Aave_3144  AsnC family transcriptional regulator  50 
 
 
152 aa  158  3e-38  Acidovorax citrulli AAC00-1  Bacteria  normal  0.18277  normal  0.966672 
 
 
-
 
NC_007948  Bpro_4248  AsnC family transcriptional regulator  48.03 
 
 
152 aa  156  1e-37  Polaromonas sp. JS666  Bacteria  normal  0.953976  normal 
 
 
-
 
NC_012791  Vapar_2047  transcriptional regulator, AsnC family  48.92 
 
 
145 aa  154  4e-37  Variovorax paradoxus S110  Bacteria  normal  0.640465  n/a   
 
 
-
 
NC_010002  Daci_4321  AsnC family transcriptional regulator  48.34 
 
 
151 aa  150  7e-36  Delftia acidovorans SPH-1  Bacteria  normal  0.468859  normal  0.287831 
 
 
-
 
NC_011992  Dtpsy_1745  transcriptional regulator, AsnC family  46.75 
 
 
155 aa  150  1e-35  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_1942  AsnC family transcriptional regulator  46.75 
 
 
155 aa  150  1e-35  Acidovorax sp. JS42  Bacteria  normal  0.0292999  normal  0.532082 
 
 
-
 
NC_007492  Pfl01_5672  AsnC family transcriptional regulator  48.68 
 
 
157 aa  147  4e-35  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5122  putative transcriptional regulator  50.66 
 
 
157 aa  144  4.0000000000000006e-34  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_58510  AsnC family transcriptional regulator  50.66 
 
 
157 aa  144  4.0000000000000006e-34  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0505  AsnC family transcriptional regulator  47.4 
 
 
181 aa  139  9.999999999999999e-33  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.287922  n/a   
 
 
-
 
NC_009720  Xaut_0213  AsnC family transcriptional regulator  47.37 
 
 
153 aa  136  1e-31  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.757841 
 
 
-
 
NC_009654  Mmwyl1_0928  AsnC family transcriptional regulator  43.87 
 
 
158 aa  135  2e-31  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_2266  AsnC family transcriptional regulator  46.85 
 
 
153 aa  133  9.999999999999999e-31  Paracoccus denitrificans PD1222  Bacteria  normal  0.400993  normal  0.321257 
 
 
-
 
NC_009708  YpsIP31758_2597  leucine-responsive transcriptional regulator  41.72 
 
 
164 aa  131  3e-30  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.0000000282665  n/a   
 
 
-
 
NC_011312  VSAL_I1840  leucine-responsive transcriptional regulator  39.24 
 
 
163 aa  132  3e-30  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.757131  n/a   
 
 
-
 
NC_010465  YPK_2686  leucine-responsive transcriptional regulator  41.72 
 
 
164 aa  131  3e-30  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.247423  n/a   
 
 
-
 
NC_010159  YpAngola_A1612  leucine-responsive transcriptional regulator  41.72 
 
 
164 aa  131  3e-30  Yersinia pestis Angola  Bacteria  hitchhiker  0.000000163573  normal 
 
 
-
 
NC_009831  Ssed_2126  leucine-responsive transcriptional regulator  39.87 
 
 
167 aa  131  3.9999999999999996e-30  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000250913  normal  0.0385806 
 
 
-
 
NC_008345  Sfri_1794  leucine-responsive transcriptional regulator  39.1 
 
 
165 aa  131  5e-30  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.000016537  n/a   
 
 
-
 
NC_010506  Swoo_2484  leucine-responsive transcriptional regulator  39.22 
 
 
167 aa  130  6e-30  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000151917  unclonable  0.000000015798 
 
 
-
 
NC_007643  Rru_A3685  AsnC family transcriptional regulator  45.1 
 
 
174 aa  130  6e-30  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.930939  n/a   
 
 
-
 
NC_013456  VEA_003880  leucine-responsive regulatory protein  40.79 
 
 
164 aa  130  6e-30  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00000693258  n/a   
 
 
-
 
NC_009457  VC0395_A1494  leucine-responsive transcriptional regulator  40.13 
 
 
164 aa  130  6e-30  Vibrio cholerae O395  Bacteria  hitchhiker  0.00000000974852  n/a   
 
 
-
 
NC_008309  HS_1187  leucine-responsive transcriptional regulator  42.47 
 
 
158 aa  130  6e-30  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_00893  DNA-binding transcriptional dual regulator, leucine-binding  41.06 
 
 
164 aa  130  6.999999999999999e-30  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2754  transcriptional regulator, AsnC family  41.06 
 
 
164 aa  130  6.999999999999999e-30  Escherichia coli DH1  Bacteria  hitchhiker  0.0000000328569  n/a   
 
 
-
 
NC_009801  EcE24377A_0964  leucine-responsive transcriptional regulator  41.06 
 
 
164 aa  130  6.999999999999999e-30  Escherichia coli E24377A  Bacteria  decreased coverage  0.0000000000271902  n/a   
 
 
-
 
NC_010468  EcolC_2707  leucine-responsive transcriptional regulator  41.06 
 
 
164 aa  130  6.999999999999999e-30  Escherichia coli ATCC 8739  Bacteria  hitchhiker  0.0000640359  normal 
 
 
-
 
NC_009800  EcHS_A0994  leucine-responsive transcriptional regulator  41.06 
 
 
164 aa  130  6.999999999999999e-30  Escherichia coli HS  Bacteria  decreased coverage  0.0000000000000266294  n/a   
 
 
-
 
NC_010658  SbBS512_E2439  leucine-responsive transcriptional regulator  41.06 
 
 
164 aa  130  6.999999999999999e-30  Shigella boydii CDC 3083-94  Bacteria  decreased coverage  0.0000000000889772  n/a   
 
 
-
 
NC_010498  EcSMS35_2231  leucine-responsive transcriptional regulator  41.06 
 
 
164 aa  130  6.999999999999999e-30  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.0000028804  normal 
 
 
-
 
NC_012892  B21_00900  hypothetical protein  41.06 
 
 
164 aa  130  6.999999999999999e-30  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_1413  leucine-responsive transcriptional regulator  41.06 
 
 
164 aa  130  6.999999999999999e-30  Enterobacter sp. 638  Bacteria  decreased coverage  0.0000135875  normal 
 
 
-
 
NC_011353  ECH74115_1051  leucine-responsive transcriptional regulator  41.06 
 
 
164 aa  130  6.999999999999999e-30  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.0000229844  normal 
 
 
-
 
NC_011083  SeHA_C1058  leucine-responsive transcriptional regulator  41.06 
 
 
164 aa  130  7.999999999999999e-30  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  decreased coverage  0.000658641  normal 
 
 
-
 
NC_013421  Pecwa_1986  leucine-responsive transcriptional regulator  41.06 
 
 
164 aa  130  7.999999999999999e-30  Pectobacterium wasabiae WPP163  Bacteria  normal  0.64528  n/a   
 
 
-
 
NC_011080  SNSL254_A0993  leucine-responsive transcriptional regulator  41.06 
 
 
164 aa  130  7.999999999999999e-30  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  decreased coverage  0.000182939  normal 
 
 
-
 
NC_011149  SeAg_B0964  leucine-responsive transcriptional regulator  41.06 
 
 
164 aa  130  7.999999999999999e-30  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.000000000969196  n/a   
 
 
-
 
NC_011094  SeSA_A1073  leucine-responsive transcriptional regulator  41.06 
 
 
164 aa  130  7.999999999999999e-30  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  decreased coverage  0.000166195  normal 
 
 
-
 
NC_011205  SeD_A1024  leucine-responsive transcriptional regulator  41.06 
 
 
164 aa  130  7.999999999999999e-30  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  unclonable  0.00000719526  normal 
 
 
-
 
NC_009832  Spro_1682  leucine-responsive transcriptional regulator  41.06 
 
 
164 aa  130  1.0000000000000001e-29  Serratia proteamaculans 568  Bacteria  normal  0.94162  normal  0.324618 
 
 
-
 
NC_009783  VIBHAR_01796  leucine-responsive transcriptional regulator  40.79 
 
 
164 aa  130  1.0000000000000001e-29  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_012912  Dd1591_2361  leucine-responsive transcriptional regulator  41.06 
 
 
164 aa  130  1.0000000000000001e-29  Dickeya zeae Ech1591  Bacteria  normal  0.84534  n/a   
 
 
-
 
NC_012880  Dd703_2261  leucine-responsive transcriptional regulator  41.06 
 
 
164 aa  130  1.0000000000000001e-29  Dickeya dadantii Ech703  Bacteria  normal  0.0124412  n/a   
 
 
-
 
NC_007954  Sden_1742  leucine-responsive transcriptional regulator  38.96 
 
 
166 aa  130  1.0000000000000001e-29  Shewanella denitrificans OS217  Bacteria  decreased coverage  0.00000000110042  n/a   
 
 
-
 
NC_009901  Spea_2234  leucine-responsive transcriptional regulator  38.46 
 
 
167 aa  129  1.0000000000000001e-29  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.0000872232  n/a   
 
 
-
 
NC_012917  PC1_1718  leucine-responsive transcriptional regulator  41.06 
 
 
164 aa  130  1.0000000000000001e-29  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.159084  n/a   
 
 
-
 
NC_008700  Sama_1771  leucine-responsive transcriptional regulator  37.82 
 
 
167 aa  129  2.0000000000000002e-29  Shewanella amazonensis SB2B  Bacteria  unclonable  0.0000000022114  normal  0.0203642 
 
 
-
 
NC_009092  Shew_2025  leucine-responsive transcriptional regulator  38.46 
 
 
167 aa  129  2.0000000000000002e-29  Shewanella loihica PV-4  Bacteria  unclonable  0.00000000839293  unclonable  0.00000134482 
 
 
-
 
NC_009665  Shew185_2216  leucine-responsive transcriptional regulator  39.75 
 
 
168 aa  128  3e-29  Shewanella baltica OS185  Bacteria  unclonable  0.0000000000025021  n/a   
 
 
-
 
NC_007488  RSP_3973  AsnC family transcriptional regulator  43.54 
 
 
154 aa  128  3e-29  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.918788  n/a   
 
 
-
 
NC_011663  Sbal223_2190  leucine-responsive transcriptional regulator  39.75 
 
 
168 aa  128  3e-29  Shewanella baltica OS223  Bacteria  hitchhiker  0.0000625254  normal  0.0646213 
 
 
-
 
NC_009997  Sbal195_2324  leucine-responsive transcriptional regulator  39.75 
 
 
168 aa  128  3e-29  Shewanella baltica OS195  Bacteria  hitchhiker  0.000000733571  normal 
 
 
-
 
NC_008043  TM1040_3629  AsnC family transcriptional regulator  45.07 
 
 
153 aa  128  3e-29  Ruegeria sp. TM1040  Bacteria  normal  normal  0.217189 
 
 
-
 
NC_009052  Sbal_2155  leucine-responsive transcriptional regulator  39.75 
 
 
168 aa  128  3e-29  Shewanella baltica OS155  Bacteria  decreased coverage  0.00000000584376  n/a   
 
 
-
 
NC_004347  SO_2305  leucine-responsive transcriptional regulator  39.75 
 
 
168 aa  128  4.0000000000000003e-29  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_2012  leucine-responsive transcriptional regulator  39.75 
 
 
168 aa  128  4.0000000000000003e-29  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000455922  n/a   
 
 
-
 
NC_008577  Shewana3_2049  leucine-responsive transcriptional regulator  39.75 
 
 
168 aa  128  4.0000000000000003e-29  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0000202075  hitchhiker  0.00142974 
 
 
-
 
NC_008321  Shewmr4_1962  leucine-responsive transcriptional regulator  39.75 
 
 
168 aa  128  4.0000000000000003e-29  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000351105  normal  0.663498 
 
 
-
 
NC_008322  Shewmr7_2014  leucine-responsive transcriptional regulator  39.75 
 
 
168 aa  128  4.0000000000000003e-29  Shewanella sp. MR-7  Bacteria  decreased coverage  0.0000513166  normal  0.0218506 
 
 
-
 
NC_011666  Msil_1640  transcriptional regulator, AsnC family  43.42 
 
 
154 aa  127  7.000000000000001e-29  Methylocella silvestris BL2  Bacteria  n/a    normal  0.113237 
 
 
-
 
NC_010322  PputGB1_5248  AsnC family transcriptional regulator  43.42 
 
 
156 aa  127  8.000000000000001e-29  Pseudomonas putida GB-1  Bacteria  normal  0.58536  normal 
 
 
-
 
NC_009075  BURPS668_A1325  AsnC family transcriptional regulator  40.97 
 
 
160 aa  126  1.0000000000000001e-28  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0576  AsnC family transcriptional regulator  40.97 
 
 
160 aa  126  1.0000000000000001e-28  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA1319  AsnC family transcriptional regulator  40.97 
 
 
160 aa  126  1.0000000000000001e-28  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_0301  AsnC family transcriptional regulator  40.97 
 
 
160 aa  126  1.0000000000000001e-28  Burkholderia mallei SAVP1  Bacteria  normal  0.0951908  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2510  AsnC family transcriptional regulator  40.97 
 
 
160 aa  126  1.0000000000000001e-28  Burkholderia pseudomallei 1710b  Bacteria  normal  0.161372  n/a   
 
 
-
 
NC_007650  BTH_II1485  AsnC family transcriptional regulator  40.97 
 
 
159 aa  126  1.0000000000000001e-28  Burkholderia thailandensis E264  Bacteria  normal  0.457516  n/a   
 
 
-
 
NC_009079  BMA10247_A0991  AsnC family transcriptional regulator  40.97 
 
 
160 aa  126  1.0000000000000001e-28  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1253  AsnC family transcriptional regulator  40.97 
 
 
160 aa  126  1.0000000000000001e-28  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_1733  AsnC family transcriptional regulator  45.07 
 
 
165 aa  125  2.0000000000000002e-28  Marinobacter aquaeolei VT8  Bacteria  normal  0.017814  n/a   
 
 
-
 
NC_002947  PP_5188  transcriptional regulator BkdR, putative  42.76 
 
 
156 aa  125  3e-28  Pseudomonas putida KT2440  Bacteria  normal  0.354058  normal 
 
 
-
 
NC_010581  Bind_1530  AsnC family transcriptional regulator  43.05 
 
 
157 aa  125  3e-28  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.14965  normal  0.648234 
 
 
-
 
NC_011206  Lferr_1659  transcriptional regulator, AsnC family  44 
 
 
161 aa  125  3e-28  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.31019  normal  0.273663 
 
 
-
 
NC_011761  AFE_1990  transcriptional regulator, AsnC family  44 
 
 
161 aa  125  3e-28  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.141708  n/a   
 
 
-
 
NC_009512  Pput_5095  AsnC family transcriptional regulator  42.76 
 
 
156 aa  125  3e-28  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_0353  AsnC family transcriptional regulator  44.44 
 
 
162 aa  125  3e-28  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA1736  bkd operon transcriptional regulator  40 
 
 
175 aa  125  4.0000000000000003e-28  Burkholderia mallei ATCC 23344  Bacteria  hitchhiker  0.00397839  n/a   
 
 
-
 
NC_009079  BMA10247_A0513  bkd operon transcriptional regulator  40 
 
 
175 aa  125  4.0000000000000003e-28  Burkholderia mallei NCTC 10247  Bacteria  hitchhiker  0.000000170709  n/a   
 
 
-
 
NC_007794  Saro_0705  AsnC family transcriptional regulator  40.27 
 
 
156 aa  125  4.0000000000000003e-28  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1843  bkd operon transcriptional regulator  40 
 
 
175 aa  125  4.0000000000000003e-28  Burkholderia mallei NCTC 10229  Bacteria  hitchhiker  0.00082559  n/a   
 
 
-
 
NC_007963  Csal_1531  AsnC family transcriptional regulator  41.43 
 
 
165 aa  124  4.0000000000000003e-28  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2516  AsnC family transcriptional regulator  42.28 
 
 
169 aa  124  4.0000000000000003e-28  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1635  bkd operon transcriptional regulator  40 
 
 
175 aa  125  4.0000000000000003e-28  Burkholderia mallei SAVP1  Bacteria  hitchhiker  0.00000232797  n/a   
 
 
-
 
NC_010501  PputW619_0275  AsnC family transcriptional regulator  41.83 
 
 
156 aa  124  5e-28  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_2441  AsnC family transcriptional regulator  41.61 
 
 
152 aa  124  5e-28  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.443821 
 
 
-
 
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