107 homologs were found in PanDaTox collection
for query gene Pden_2782 on replicon NC_008686
Organism: Paracoccus denitrificans PD1222



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008686  Pden_2782  histone family protein nucleoid-structuring protein H-NS  100 
 
 
102 aa  205  2e-52  Paracoccus denitrificans PD1222  Bacteria  normal  0.0983316  normal 
 
 
-
 
NC_007493  RSP_1517  HNS family histone-like protein  56.73 
 
 
104 aa  115  3e-25  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.632748  n/a   
 
 
-
 
NC_009049  Rsph17029_0169  histone family protein nucleoid-structuring protein H-NS  56.73 
 
 
104 aa  115  3e-25  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.485688 
 
 
-
 
NC_009428  Rsph17025_2961  histone family protein nucleoid-structuring protein H-NS  56.73 
 
 
104 aa  114  5e-25  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.0570093 
 
 
-
 
NC_007489  RSP_4056  histone-like nucleoid-structuring protein H-NS  52.88 
 
 
105 aa  114  6e-25  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009432  Rsph17025_4385  histone family protein nucleoid-structuring protein H-NS  51.96 
 
 
105 aa  109  1.0000000000000001e-23  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0118502  normal  0.891502 
 
 
-
 
NC_009430  Rsph17025_4162  hypothetical protein  50.49 
 
 
247 aa  103  8e-22  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_0798  histone-like nucleoid-structuring protein H-NS  46.23 
 
 
119 aa  95.1  3e-19  Jannaschia sp. CCS1  Bacteria  normal  0.835916  normal 
 
 
-
 
NC_007801  Jann_4229  histone-like nucleoid-structuring protein H-NS  42.42 
 
 
108 aa  94.4  4e-19  Jannaschia sp. CCS1  Bacteria  normal  0.289876  normal 
 
 
-
 
NC_008686  Pden_1545  histone family protein nucleoid-structuring protein H-NS  48.04 
 
 
105 aa  93.6  9e-19  Paracoccus denitrificans PD1222  Bacteria  normal  0.718681  normal  0.0365604 
 
 
-
 
NC_008687  Pden_3349  histone family protein nucleoid-structuring protein H-NS  52.94 
 
 
105 aa  92.8  2e-18  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.340557 
 
 
-
 
NC_008687  Pden_3156  histone family protein nucleoid-structuring protein H-NS  53.92 
 
 
105 aa  89  2e-17  Paracoccus denitrificans PD1222  Bacteria  normal  0.116532  normal  0.477373 
 
 
-
 
NC_007489  RSP_7372  H-NS family DNA-binding protein  47 
 
 
104 aa  87.4  5e-17  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3107  histone-like nucleoid-structuring protein H-NS  50 
 
 
106 aa  82  0.000000000000002  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_1024  histone family protein nucleoid-structuring protein H-NS  41.9 
 
 
105 aa  82.4  0.000000000000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.0737742  normal  0.814079 
 
 
-
 
NC_009430  Rsph17025_4136  hypothetical protein  45.63 
 
 
132 aa  80.5  0.000000000000006  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_1986  histone family protein nucleoid-structuring protein H-NS  34.62 
 
 
105 aa  70.1  0.00000000001  Alkalilimnicola ehrlichii MLHE-1  Bacteria  decreased coverage  0.000000114439  normal  0.0153833 
 
 
-
 
NC_013422  Hneap_0439  histone family protein nucleoid-structuring protein H-NS  35.24 
 
 
107 aa  67.8  0.00000000005  Halothiobacillus neapolitanus c2  Bacteria  decreased coverage  0.0000352276  n/a   
 
 
-
 
NC_007493  RSP_0002  histone-like nucleoid-structuring protein H-NS  33.94 
 
 
131 aa  62  0.000000003  Rhodobacter sphaeroides 2.4.1  Bacteria  hitchhiker  0.0049965  n/a   
 
 
-
 
NC_008789  Hhal_1489  histone family protein nucleoid-structuring protein H-NS  35.45 
 
 
115 aa  61.2  0.000000004  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0441  histone family protein nucleoid-structuring protein H-NS  37.72 
 
 
124 aa  60.5  0.000000007  Halorhodospira halophila SL1  Bacteria  normal  0.940607  n/a   
 
 
-
 
NC_008752  Aave_1150  histone family protein nucleoid-structuring protein H-NS  41.18 
 
 
99 aa  60.1  0.000000009  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_2525  histone-like nucleoid-structuring protein H-NS  32.08 
 
 
105 aa  60.1  0.00000001  Dechloromonas aromatica RCB  Bacteria  decreased coverage  9.16284e-21  normal  0.0335348 
 
 
-
 
NC_007964  Nham_3068  histone-like nucleoid-structuring protein H-NS  32.71 
 
 
122 aa  58.9  0.00000002  Nitrobacter hamburgensis X14  Bacteria  normal  0.280777  n/a   
 
 
-
 
NC_007969  Pcryo_1957  histone-like nucleoid-structuring protein H-NS  33.66 
 
 
121 aa  58.9  0.00000003  Psychrobacter cryohalolentis K5  Bacteria  hitchhiker  0.00140882  normal 
 
 
-
 
NC_013421  Pecwa_1651  histone family protein nucleoid-structuring protein H-NS  34.62 
 
 
107 aa  58.2  0.00000004  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA1863  regulator protein, putative  33.64 
 
 
112 aa  55.5  0.0000002  Methylococcus capsulatus str. Bath  Bacteria  unclonable  0.0000000371113  n/a   
 
 
-
 
NC_007964  Nham_3069  histone-like nucleoid-structuring protein H-NS  33.03 
 
 
130 aa  56.2  0.0000002  Nitrobacter hamburgensis X14  Bacteria  normal  0.39515  n/a   
 
 
-
 
NC_009379  Pnuc_0838  histone family protein nucleoid-structuring protein H-NS  38.55 
 
 
94 aa  56.2  0.0000002  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_0116  histone family protein nucleoid-structuring protein H-NS  40.23 
 
 
100 aa  55.5  0.0000003  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_03185  DNA-binding protein  54.76 
 
 
153 aa  55.5  0.0000003  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_0526  histone family protein nucleoid-structuring protein H-NS  33.33 
 
 
127 aa  55.1  0.0000003  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.280908 
 
 
-
 
NC_013421  Pecwa_2842  histone family protein nucleoid-structuring protein H-NS  33.33 
 
 
133 aa  53.5  0.000001  Pectobacterium wasabiae WPP163  Bacteria  hitchhiker  0.00137778  n/a   
 
 
-
 
NC_006348  BMA2905  H-NS histone family protein  34.65 
 
 
97 aa  53.1  0.000001  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0048  H-NS histone family protein  34.65 
 
 
125 aa  53.1  0.000001  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I3155  H-NS histone family protein  34.65 
 
 
97 aa  53.1  0.000001  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3404  H-NS histone family protein  34.65 
 
 
97 aa  53.1  0.000001  Burkholderia mallei SAVP1  Bacteria  normal  0.237819  n/a   
 
 
-
 
NC_008836  BMA10229_A1636  H-NS histone family protein  34.65 
 
 
97 aa  53.1  0.000001  Burkholderia mallei NCTC 10229  Bacteria  normal  0.741416  n/a   
 
 
-
 
NC_009074  BURPS668_3827  H-NS histone family protein  34.65 
 
 
97 aa  53.1  0.000001  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3909  H-NS histone family protein  34.65 
 
 
97 aa  53.1  0.000001  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2965  H-NS histone family protein  34.65 
 
 
97 aa  53.1  0.000001  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1795  histone family protein nucleoid-structuring protein H-NS  38.83 
 
 
114 aa  53.5  0.000001  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A3384  histone-like nucleoid-structuring protein H-NS  33.66 
 
 
97 aa  52  0.000002  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_2158  histone family protein nucleoid-structuring protein H-NS  36.05 
 
 
96 aa  52.8  0.000002  Delftia acidovorans SPH-1  Bacteria  normal  0.232102  normal  0.811955 
 
 
-
 
NC_010577  XfasM23_1726  histone family protein nucleoid-structuring protein H-NS  28.93 
 
 
124 aa  52.4  0.000002  Xylella fastidiosa M23  Bacteria  normal  0.442577  n/a   
 
 
-
 
NC_010681  Bphyt_0398  histone family protein nucleoid-structuring protein H-NS  36.78 
 
 
100 aa  52.8  0.000002  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A4321  putative HNS-like transcriptional regulator  36.78 
 
 
100 aa  52  0.000003  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2825  histone-like nucleoid-structuring protein H-NS  33.66 
 
 
97 aa  52  0.000003  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0281  histone family protein nucleoid-structuring protein H-NS  33.66 
 
 
97 aa  52  0.000003  Burkholderia cenocepacia HI2424  Bacteria  normal  0.166699  n/a   
 
 
-
 
NC_010508  Bcenmc03_0263  histone family protein nucleoid-structuring protein H-NS  33.66 
 
 
97 aa  52  0.000003  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.820493 
 
 
-
 
NC_008390  Bamb_0195  histone family protein nucleoid-structuring protein H-NS  33.66 
 
 
97 aa  51.2  0.000005  Burkholderia ambifaria AMMD  Bacteria  normal  0.750004  n/a   
 
 
-
 
NC_010513  Xfasm12_1793  DNA-binding protein  28.1 
 
 
124 aa  51.2  0.000005  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_0209  histone family protein nucleoid-structuring protein H-NS  33.66 
 
 
97 aa  51.2  0.000005  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.726678 
 
 
-
 
NC_008782  Ajs_1144  histone family protein nucleoid-structuring protein H-NS  38.04 
 
 
98 aa  50.8  0.000006  Acidovorax sp. JS42  Bacteria  normal  0.439674  normal  0.582774 
 
 
-
 
NC_011992  Dtpsy_1065  histone family protein nucleoid-structuring protein H-NS  38.04 
 
 
98 aa  50.8  0.000006  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0190  histone family protein nucleoid-structuring protein H-NS  33.66 
 
 
97 aa  50.4  0.000007  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.317548  hitchhiker  0.0000000190695 
 
 
-
 
NC_011071  Smal_3562  histone family protein nucleoid-structuring protein H-NS  31.9 
 
 
139 aa  50.4  0.000007  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.626821  normal  0.684238 
 
 
-
 
NC_007958  RPD_2738  histone-like nucleoid-structuring protein H-NS  28.97 
 
 
139 aa  50.4  0.000009  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.789792  normal 
 
 
-
 
NC_012912  Dd1591_1152  histone family protein nucleoid-structuring protein H-NS  33.04 
 
 
133 aa  50.1  0.00001  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2575  histone family protein nucleoid-structuring protein H-NS  33.04 
 
 
133 aa  49.7  0.00001  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3934  histone family protein nucleoid-structuring protein H-NS  30.86 
 
 
91 aa  48.9  0.00002  Delftia acidovorans SPH-1  Bacteria  normal  0.222409  normal  0.184824 
 
 
-
 
NC_010002  Daci_1913  histone family protein nucleoid-structuring protein H-NS  37.84 
 
 
95 aa  48.5  0.00003  Delftia acidovorans SPH-1  Bacteria  normal  hitchhiker  0.00000000183319 
 
 
-
 
NC_010002  Daci_4128  histone family protein nucleoid-structuring protein H-NS  37.84 
 
 
95 aa  48.5  0.00003  Delftia acidovorans SPH-1  Bacteria  normal  0.382519  hitchhiker  0.00000000510411 
 
 
-
 
NC_008781  Pnap_3493  histone family protein nucleoid-structuring protein H-NS  30.77 
 
 
113 aa  47.4  0.00006  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.572012  normal  0.600215 
 
 
-
 
NC_012855  Rpic12D_4934  histone family protein nucleoid-structuring protein H-NS  33.33 
 
 
103 aa  47.4  0.00006  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A1370  nucleoid protein H-NS  38.03 
 
 
115 aa  46.6  0.0001  Methylibium petroleiphilum PM1  Bacteria  normal  0.620152  normal 
 
 
-
 
NC_013421  Pecwa_1754  histone family protein nucleoid-structuring protein H-NS  41.38 
 
 
133 aa  47  0.0001  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_4465  histone family protein nucleoid-structuring protein H-NS  33.75 
 
 
92 aa  46.6  0.0001  Delftia acidovorans SPH-1  Bacteria  normal  0.695514  normal  0.126063 
 
 
-
 
NC_011148  SeAg_A0019  H-NS histone family  39.76 
 
 
141 aa  47  0.0001  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  n/a    n/a   
 
 
-
 
NC_011662  Tmz1t_2060  histone family protein nucleoid-structuring protein H-NS  36.25 
 
 
91 aa  46.6  0.0001  Thauera sp. MZ1T  Bacteria  normal  0.0796579  n/a   
 
 
-
 
NC_010524  Lcho_2290  histone family protein nucleoid-structuring protein H-NS  46.34 
 
 
112 aa  45.8  0.0002  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009428  Rsph17025_2688  hypothetical protein  32 
 
 
110 aa  44.7  0.0004  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.299941  normal 
 
 
-
 
NC_013421  Pecwa_3053  histone family protein nucleoid-structuring protein H-NS  30 
 
 
133 aa  45.1  0.0004  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0965485  n/a   
 
 
-
 
NC_003296  RS02004  putative HNS-like transcription regulator protein  30.34 
 
 
95 aa  44.3  0.0006  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0969964  normal 
 
 
-
 
NC_009457  VC0395_A0700  DNA-binding protein VicH  40 
 
 
137 aa  44.3  0.0006  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_01827  hypothetical protein  44 
 
 
135 aa  43.9  0.0007  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007348  Reut_B5596  nucleoid protein H-NS  30 
 
 
102 aa  43.1  0.001  Ralstonia eutropha JMP134  Bacteria  normal  0.16143  n/a   
 
 
-
 
NC_008752  Aave_2580  histone family protein nucleoid-structuring protein H-NS  31.65 
 
 
119 aa  43.1  0.001  Acidovorax citrulli AAC00-1  Bacteria  normal  0.122678  normal  0.024514 
 
 
-
 
NC_008786  Veis_1341  histone family protein nucleoid-structuring protein H-NS  62.07 
 
 
74 aa  43.1  0.001  Verminephrobacter eiseniae EF01-2  Bacteria  hitchhiker  0.000011697  hitchhiker  0.000659538 
 
 
-
 
NC_011205  SeD_A2329  H-NS histone family protein  30.97 
 
 
134 aa  43.5  0.001  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.1305  hitchhiker  0.00000000912792 
 
 
-
 
NC_012855  Rpic12D_4689  histone family protein nucleoid-structuring protein H-NS  36.84 
 
 
92 aa  43.1  0.001  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_3677  histone-like nucleoid-structuring protein H-NS  34.29 
 
 
102 aa  42.4  0.002  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.166379 
 
 
-
 
NC_008309  HS_0787  DNA-binding protein H-NS  32.91 
 
 
134 aa  42.4  0.002  Haemophilus somnus 129PT  Bacteria  normal  0.123185  n/a   
 
 
-
 
NC_010678  Rpic_4238  histone family protein nucleoid-structuring protein H-NS  33.33 
 
 
102 aa  42  0.003  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_010679  Bphyt_7403  histone family protein nucleoid-structuring protein H-NS  29.89 
 
 
96 aa  42  0.003  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_1136  histone family protein nucleoid-structuring protein H-NS  31 
 
 
104 aa  42  0.003  Thauera sp. MZ1T  Bacteria  hitchhiker  0.00265311  n/a   
 
 
-
 
NC_012857  Rpic12D_4348  histone family protein nucleoid-structuring protein H-NS  33.33 
 
 
102 aa  42  0.003  Ralstonia pickettii 12D  Bacteria  normal  normal  0.513312 
 
 
-
 
NC_012880  Dd703_2605  histone family protein nucleoid-structuring protein H-NS  39.39 
 
 
132 aa  42  0.003  Dickeya dadantii Ech703  Bacteria  normal  0.730726  n/a   
 
 
-
 
NC_010002  Daci_4714  histone family protein nucleoid-structuring protein H-NS  27.06 
 
 
98 aa  41.6  0.004  Delftia acidovorans SPH-1  Bacteria  normal  0.991534  normal  0.729946 
 
 
-
 
NC_010087  Bmul_6044  histone family protein nucleoid-structuring protein H-NS  32.63 
 
 
116 aa  41.6  0.004  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.304642 
 
 
-
 
NC_010678  Rpic_4798  histone family protein nucleoid-structuring protein H-NS  28.89 
 
 
96 aa  41.6  0.004  Ralstonia pickettii 12J  Bacteria  normal  0.272454  normal  0.166506 
 
 
-
 
NC_011312  VSAL_I2145  DNA binding protein, global metabolism regulator  48.65 
 
 
137 aa  41.2  0.004  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.110406  n/a   
 
 
-
 
NC_012857  Rpic12D_3721  histone family protein nucleoid-structuring protein H-NS  28.89 
 
 
96 aa  41.6  0.004  Ralstonia pickettii 12D  Bacteria  decreased coverage  0.00112888  normal  0.513312 
 
 
-
 
NC_007435  BURPS1710b_A1635  H-NS histone family protein  36.25 
 
 
97 aa  41.2  0.005  Burkholderia pseudomallei 1710b  Bacteria  normal  0.749854  n/a   
 
 
-
 
NC_013456  VEA_003852  DNA-binding protein H-NS  40 
 
 
135 aa  41.2  0.005  Vibrio sp. Ex25  Bacteria  normal  0.0195644  n/a   
 
 
-
 
NC_008345  Sfri_2749  histone family protein nucleoid-structuring protein H-NS  30.36 
 
 
136 aa  41.2  0.005  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.000604606  n/a   
 
 
-
 
NC_008391  Bamb_3595  histone family protein nucleoid-structuring protein H-NS  33.72 
 
 
95 aa  41.2  0.005  Burkholderia ambifaria AMMD  Bacteria  normal  0.137974  normal 
 
 
-
 
NC_009075  BURPS668_A0260  H-NS histone family protein  36.25 
 
 
128 aa  41.2  0.005  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0171  H-NS histone family protein  36.25 
 
 
128 aa  41.2  0.005  Burkholderia pseudomallei 1106a  Bacteria  normal  0.854986  n/a   
 
 
-
 
NC_009092  Shew_2585  histone family protein nucleoid-structuring protein H-NS  29.82 
 
 
130 aa  41.2  0.005  Shewanella loihica PV-4  Bacteria  hitchhiker  0.000212728  normal 
 
 
-
 
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