More than 300 homologs were found in PanDaTox collection
for query gene Pcar_1667 on replicon NC_007498
Organism: Pelobacter carbinolicus DSM 2380



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002939  GSU0686  1-deoxy-D-xylulose-5-phosphate synthase  62.09 
 
 
637 aa  783    Geobacter sulfurreducens PCA  Bacteria  normal  0.351489  n/a   
 
 
-
 
NC_002939  GSU1764  1-deoxy-D-xylulose-5-phosphate synthase  62.26 
 
 
626 aa  788    Geobacter sulfurreducens PCA  Bacteria  normal  0.0479282  n/a   
 
 
-
 
NC_002977  MCA0817  1-deoxy-D-xylulose-5-phosphate synthase  53.54 
 
 
639 aa  637    Methylococcus capsulatus str. Bath  Bacteria  normal  0.64849  n/a   
 
 
-
 
NC_009675  Anae109_1136  deoxyxylulose-5-phosphate synthase  52.81 
 
 
635 aa  636    Anaeromyxobacter sp. Fw109-5  Bacteria  normal  hitchhiker  0.00423359 
 
 
-
 
NC_012918  GM21_3025  1-deoxy-D-xylulose-5-phosphate synthase  62.14 
 
 
646 aa  779    Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009943  Dole_1662  deoxyxylulose-5-phosphate synthase  54.72 
 
 
626 aa  706    Desulfococcus oleovorans Hxd3  Bacteria  normal  0.184143  n/a   
 
 
-
 
NC_011146  Gbem_1258  1-deoxy-D-xylulose-5-phosphate synthase  61.97 
 
 
646 aa  774    Geobacter bemidjiensis Bem  Bacteria  normal  0.260207  n/a   
 
 
-
 
NC_010623  Bphy_3948  1-deoxy-D-xylulose-5-phosphate synthase  51.28 
 
 
632 aa  635    Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0832  1-deoxy-D-xylulose-5-phosphate synthase  53.08 
 
 
640 aa  642    Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.111285  n/a   
 
 
-
 
NC_013216  Dtox_2584  deoxyxylulose-5-phosphate synthase  54.93 
 
 
633 aa  681    Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.931562  normal  0.224926 
 
 
-
 
NC_007298  Daro_3061  1-deoxy-D-xylulose-5-phosphate synthase  54.69 
 
 
618 aa  658    Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.004887  hitchhiker  0.00000111191 
 
 
-
 
NC_007404  Tbd_0879  1-deoxy-D-xylulose-5-phosphate synthase  54.22 
 
 
618 aa  635    Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.623076 
 
 
-
 
NC_010814  Glov_2235  1-deoxy-D-xylulose-5-phosphate synthase  58.68 
 
 
622 aa  740    Geobacter lovleyi SZ  Bacteria  normal  0.77755  n/a   
 
 
-
 
NC_009012  Cthe_0828  1-deoxy-D-xylulose-5-phosphate synthase  52.49 
 
 
627 aa  650    Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1667  1-deoxy-D-xylulose-5-phosphate synthase  100 
 
 
634 aa  1285    Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000640226  n/a   
 
 
-
 
NC_007517  Gmet_1934  1-deoxy-D-xylulose-5-phosphate synthase  61.84 
 
 
625 aa  791    Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_2822  1-deoxy-D-xylulose-5-phosphate synthase  62.58 
 
 
635 aa  795    Geobacter metallireducens GS-15  Bacteria  normal  0.553695  normal  0.10664 
 
 
-
 
NC_007519  Dde_2200  1-deoxy-D-xylulose-5-phosphate synthase  57.37 
 
 
661 aa  701    Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3362  1-deoxy-D-xylulose-5-phosphate synthase  58.86 
 
 
635 aa  749    Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2182  1-deoxy-D-xylulose-5-phosphate synthase  58.84 
 
 
625 aa  761    Geobacter lovleyi SZ  Bacteria  normal  0.0455646  n/a   
 
 
-
 
NC_007614  Nmul_A0236  1-deoxy-D-xylulose-5-phosphate synthase  51.95 
 
 
614 aa  642    Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.947213  n/a   
 
 
-
 
NC_007644  Moth_1511  1-deoxy-D-xylulose-5-phosphate synthase  55.63 
 
 
640 aa  676    Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_2242  1-deoxy-D-xylulose-5-phosphate synthase  51.19 
 
 
638 aa  635    Delftia acidovorans SPH-1  Bacteria  normal  normal  0.0315294 
 
 
-
 
NC_008825  Mpe_A2631  1-deoxy-D-xylulose-5-phosphate synthase  52.03 
 
 
631 aa  635    Methylibium petroleiphilum PM1  Bacteria  normal  0.898306  normal 
 
 
-
 
NC_010718  Nther_1694  1-Deoxy-D-xylulose-5-phosphate synthase  51.29 
 
 
631 aa  657    Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.134316  normal  0.0277937 
 
 
-
 
NC_007947  Mfla_2133  1-deoxy-D-xylulose-5-phosphate synthase  51.87 
 
 
614 aa  647    Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.000520629  normal 
 
 
-
 
NC_009483  Gura_2175  1-deoxy-D-xylulose-5-phosphate synthase  63.06 
 
 
620 aa  786    Geobacter uraniireducens Rf4  Bacteria  normal  0.0116264  n/a   
 
 
-
 
NC_011883  Ddes_0956  1-deoxy-D-xylulose-5-phosphate synthase  55.32 
 
 
644 aa  659    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.246357  n/a   
 
 
-
 
NC_011830  Dhaf_3488  deoxyxylulose-5-phosphate synthase  54.89 
 
 
631 aa  662    Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0451312  n/a   
 
 
-
 
NC_009253  Dred_1078  deoxyxylulose-5-phosphate synthase  57.67 
 
 
635 aa  738    Desulfotomaculum reducens MI-1  Bacteria  normal  0.0303047  n/a   
 
 
-
 
NC_011769  DvMF_0126  1-deoxy-D-xylulose-5-phosphate synthase  56.48 
 
 
646 aa  693    Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.410155 
 
 
-
 
NC_013223  Dret_1758  deoxyxylulose-5-phosphate synthase  57.05 
 
 
633 aa  715    Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.805776 
 
 
-
 
NC_009483  Gura_1018  1-deoxy-D-xylulose-5-phosphate synthase  59.52 
 
 
637 aa  764    Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_06530  deoxyxylulose-5-phosphate synthase  52.76 
 
 
636 aa  676    Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000000553997  n/a   
 
 
-
 
NC_011662  Tmz1t_1774  1-deoxy-D-xylulose-5-phosphate synthase  54.13 
 
 
622 aa  640    Thauera sp. MZ1T  Bacteria  normal  0.0951101  n/a   
 
 
-
 
NC_013173  Dbac_0943  deoxyxylulose-5-phosphate synthase  60.65 
 
 
635 aa  745    Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1398  deoxyxylulose-5-phosphate synthase  56.98 
 
 
629 aa  673    Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1540  1-deoxy-D-xylulose-5-phosphate synthase  53.66 
 
 
620 aa  664    Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.00810208  n/a   
 
 
-
 
NC_008340  Mlg_1381  1-deoxy-D-xylulose-5-phosphate synthase  52.1 
 
 
628 aa  639    Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.604583  normal  0.510709 
 
 
-
 
NC_008346  Swol_0582  deoxyxylulose-5-phosphate synthase  52.68 
 
 
638 aa  672    Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_1418  deoxyxylulose-5-phosphate synthase  56.3 
 
 
646 aa  736    Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.793105  normal  0.333041 
 
 
-
 
NC_008576  Mmc1_1048  1-deoxy-D-xylulose-5-phosphate synthase  55.2 
 
 
622 aa  669    Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_1191  1-deoxy-D-xylulose-5-phosphate synthase  59.13 
 
 
624 aa  709    Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2403  1-deoxy-D-xylulose-5-phosphate synthase  60.38 
 
 
626 aa  757    Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1027  deoxyxylulose-5-phosphate synthase  56.03 
 
 
634 aa  689    Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0883  1-deoxy-D-xylulose-5-phosphate synthase  58.7 
 
 
635 aa  752    Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000207097 
 
 
-
 
NC_008751  Dvul_1718  1-deoxy-D-xylulose-5-phosphate synthase  55.29 
 
 
641 aa  677    Desulfovibrio vulgaris DP4  Bacteria  normal  0.0789997  normal  0.8348 
 
 
-
 
NC_010676  Bphyt_6781  1-deoxy-D-xylulose-5-phosphate synthase  52.19 
 
 
653 aa  633  1e-180  Burkholderia phytofirmans PsJN  Bacteria  normal  0.772471  hitchhiker  0.0000939262 
 
 
-
 
NC_010524  Lcho_3373  deoxyxylulose-5-phosphate synthase  52.63 
 
 
639 aa  634  1e-180  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007952  Bxe_B2827  1-deoxy-D-xylulose-5-phosphate synthase  52.35 
 
 
635 aa  632  1e-180  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2015  1-deoxy-D-xylulose-5-phosphate synthase  52.36 
 
 
622 aa  634  1e-180  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0928222  hitchhiker  0.00382162 
 
 
-
 
NC_012791  Vapar_1571  1-deoxy-D-xylulose-5-phosphate synthase  51.62 
 
 
632 aa  630  1e-179  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2619  1-deoxy-D-xylulose-5-phosphate synthase  52.25 
 
 
645 aa  629  1e-179  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0887721  n/a   
 
 
-
 
NC_007948  Bpro_1747  1-deoxy-D-xylulose-5-phosphate synthase  52.44 
 
 
635 aa  631  1e-179  Polaromonas sp. JS666  Bacteria  normal  normal  0.123274 
 
 
-
 
NC_013205  Aaci_2448  deoxyxylulose-5-phosphate synthase  49.92 
 
 
631 aa  626  1e-178  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc2221  1-deoxy-D-xylulose-5-phosphate synthase  51.76 
 
 
636 aa  626  1e-178  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0956  1-deoxy-D-xylulose-5-phosphate synthase  52.27 
 
 
629 aa  628  1e-178  Acidovorax ebreus TPSY  Bacteria  normal  0.922207  n/a   
 
 
-
 
NC_007643  Rru_A0054  1-deoxy-D-xylulose-5-phosphate synthase  51.93 
 
 
645 aa  627  1e-178  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_2426  1-deoxy-D-xylulose-5-phosphate synthase  50.72 
 
 
636 aa  627  1e-178  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_0887  1-deoxy-D-xylulose-5-phosphate synthase  50.97 
 
 
620 aa  628  1e-178  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_004258  1-deoxy-D-xylulose 5-phosphate synthase  50.49 
 
 
621 aa  627  1e-178  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_2033  1-deoxy-D-xylulose-5-phosphate synthase  50.96 
 
 
636 aa  627  1e-178  Ralstonia pickettii 12D  Bacteria  normal  0.720268  normal 
 
 
-
 
NC_008781  Pnap_1501  1-deoxy-D-xylulose-5-phosphate synthase  52.49 
 
 
636 aa  628  1e-178  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_08020  1-deoxy-D-xylulose-5-phosphate synthase  51.53 
 
 
630 aa  624  1e-177  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.637143  hitchhiker  0.00000100626 
 
 
-
 
NC_011126  HY04AAS1_1061  1-deoxy-D-xylulose-5-phosphate synthase  50.89 
 
 
627 aa  625  1e-177  Hydrogenobaculum sp. Y04AAS1  Bacteria  hitchhiker  0.00520521  n/a   
 
 
-
 
NC_007760  Adeh_1097  1-deoxy-D-xylulose-5-phosphate synthase  52.93 
 
 
636 aa  622  1e-177  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.124796  n/a   
 
 
-
 
NC_011312  VSAL_I0933  1-deoxy-D-xylulose-5-phosphate synthase  48.87 
 
 
627 aa  624  1e-177  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.050049  n/a   
 
 
-
 
NC_008309  HS_0905  1-deoxy-D-xylulose-5-phosphate synthase  49.76 
 
 
617 aa  622  1e-177  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2790  1-deoxy-D-xylulose-5-phosphate synthase  50.48 
 
 
621 aa  622  1e-177  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00619282  n/a   
 
 
-
 
NC_008347  Mmar10_0849  1-deoxy-D-xylulose-5-phosphate synthase  52.95 
 
 
643 aa  623  1e-177  Maricaulis maris MCS10  Bacteria  normal  normal  0.313067 
 
 
-
 
NC_011761  AFE_1974  1-deoxy-D-xylulose-5-phosphate synthase  52.42 
 
 
624 aa  622  1e-177  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_3314  1-deoxy-D-xylulose-5-phosphate synthase  53.4 
 
 
638 aa  624  1e-177  Caulobacter sp. K31  Bacteria  normal  normal  0.855639 
 
 
-
 
NC_011206  Lferr_1642  deoxyxylulose-5-phosphate synthase  52.42 
 
 
624 aa  622  1e-177  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  hitchhiker  0.0000759377 
 
 
-
 
NC_013421  Pecwa_3281  1-deoxy-D-xylulose-5-phosphate synthase  51.38 
 
 
621 aa  618  1e-176  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2991  1-deoxy-D-xylulose-5-phosphate synthase  50.48 
 
 
621 aa  621  1e-176  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00146592  n/a   
 
 
-
 
NC_007406  Nwi_0633  1-deoxy-D-xylulose-5-phosphate synthase  51.93 
 
 
666 aa  619  1e-176  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.300424  normal 
 
 
-
 
NC_007484  Noc_1743  1-deoxy-D-xylulose-5-phosphate synthase  51.05 
 
 
640 aa  619  1e-176  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_0251  1-deoxy-D-xylulose-5-phosphate synthase  51.44 
 
 
631 aa  621  1e-176  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007973  Rmet_2615  1-deoxy-D-xylulose-5-phosphate synthase  50.8 
 
 
637 aa  619  1e-176  Cupriavidus metallidurans CH34  Bacteria  normal  0.0207867  normal  0.922526 
 
 
-
 
CP001637  EcDH1_3189  deoxyxylulose-5-phosphate synthase  51.14 
 
 
620 aa  617  1e-175  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2392  1-deoxy-D-xylulose-5-phosphate synthase  51.19 
 
 
634 aa  615  1e-175  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2534  1-deoxy-D-xylulose-5-phosphate synthase  51.19 
 
 
634 aa  616  1e-175  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1030  1-deoxy-D-xylulose-5-phosphate synthase  51.38 
 
 
621 aa  617  1e-175  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_1038  1-deoxy-D-xylulose-5-phosphate synthase  51.79 
 
 
629 aa  615  1e-175  Acidovorax sp. JS42  Bacteria  normal  normal  0.151705 
 
 
-
 
NC_006349  BMAA0330  1-deoxy-D-xylulose-5-phosphate synthase  51.19 
 
 
634 aa  615  1e-175  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0364  1-deoxy-D-xylulose-5-phosphate synthase  51.19 
 
 
651 aa  615  1e-175  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_0503  1-deoxy-D-xylulose-5-phosphate synthase  50.98 
 
 
620 aa  617  1e-175  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_007435  BURPS1710b_A0842  1-deoxy-D-xylulose-5-phosphate synthase  51.19 
 
 
634 aa  615  1e-175  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1157  deoxyxylulose-5-phosphate synthase  52.45 
 
 
636 aa  615  1e-175  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E0341  1-deoxy-D-xylulose-5-phosphate synthase  50.98 
 
 
620 aa  617  1e-175  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3085  1-deoxy-D-xylulose-5-phosphate synthase  51.22 
 
 
620 aa  615  1e-175  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A0491  1-deoxy-D-xylulose-5-phosphate synthase  50.65 
 
 
620 aa  615  1e-175  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2875  1-deoxy-D-xylulose-5-phosphate synthase  51.87 
 
 
632 aa  618  1e-175  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_4820  1-deoxy-D-xylulose-5-phosphate synthase  51.13 
 
 
646 aa  615  1e-175  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_0451  1-deoxy-D-xylulose-5-phosphate synthase  50.65 
 
 
620 aa  615  1e-175  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2571  1-deoxy-D-xylulose-5-phosphate synthase  49.03 
 
 
622 aa  617  1e-175  Shewanella denitrificans OS217  Bacteria  decreased coverage  0.000000155122  n/a   
 
 
-
 
NC_012892  B21_00372  hypothetical protein  50.98 
 
 
620 aa  617  1e-175  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_2319  1-deoxy-D-xylulose-5-phosphate synthase  50.08 
 
 
630 aa  617  1e-175  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_0781  1-deoxy-D-xylulose-5-phosphate synthase  52.06 
 
 
650 aa  615  1e-175  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.128474  normal  0.356919 
 
 
-
 
NC_008740  Maqu_2438  1-deoxy-D-xylulose-5-phosphate synthase  50.16 
 
 
643 aa  616  1e-175  Marinobacter aquaeolei VT8  Bacteria  normal  0.688474  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>