More than 300 homologs were found in PanDaTox collection
for query gene PSPTO_3912 on replicon NC_004578
Organism: Pseudomonas syringae pv. tomato str. DC3000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004578  PSPTO_3912  cyclic nucleotide-binding protein  100 
 
 
144 aa  287  3e-77  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.262178  n/a   
 
 
-
 
NC_007005  Psyr_1573  cyclic nucleotide-binding  95.14 
 
 
158 aa  277  4e-74  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.490025  hitchhiker  0.00990577 
 
 
-
 
NC_007492  Pfl01_1398  cyclic nucleotide-binding protein  72.22 
 
 
157 aa  221  3e-57  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.908167  normal 
 
 
-
 
NC_010501  PputW619_3891  cyclic nucleotide-binding protein  73.05 
 
 
155 aa  212  9.999999999999999e-55  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1780  cyclic nucleotide-binding protein  63.38 
 
 
156 aa  194  4.0000000000000005e-49  Pseudomonas mendocina ymp  Bacteria  normal  0.489231  normal 
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  34.85 
 
 
226 aa  82.4  0.000000000000002  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  34.95 
 
 
228 aa  79.7  0.00000000000001  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  31.65 
 
 
225 aa  74.7  0.0000000000003  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_007498  Pcar_0452  cAMP-binding protein  34.51 
 
 
160 aa  74.3  0.0000000000005  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.000000000045265  n/a   
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  33.94 
 
 
226 aa  74.3  0.0000000000006  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_012918  GM21_1866  putative transcriptional regulator, Crp/Fnr family  31.3 
 
 
182 aa  74.3  0.0000000000006  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  31.65 
 
 
225 aa  74.3  0.0000000000006  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  31.85 
 
 
225 aa  73.9  0.0000000000007  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  30.77 
 
 
251 aa  72.4  0.000000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  30.77 
 
 
228 aa  71.6  0.000000000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_008786  Veis_1689  cyclic nucleotide-binding protein  27.69 
 
 
212 aa  71.2  0.000000000004  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.792602 
 
 
-
 
NC_013440  Hoch_4460  putative transcriptional regulator, Crp/Fnr family  34.82 
 
 
171 aa  70.5  0.000000000008  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1802  transcriptional regulator, Crp/Fnr family  33.9 
 
 
238 aa  70.5  0.000000000008  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_002967  TDE2725  cyclic nucleotide binding/GGDEF domain-containing protein  33.82 
 
 
322 aa  70.1  0.000000000009  Treponema denticola ATCC 35405  Bacteria  normal  0.792666  n/a   
 
 
-
 
NC_002967  TDE0067  cyclic nucleotide-binding protein  33.33 
 
 
415 aa  70.1  0.00000000001  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  33.94 
 
 
228 aa  69.7  0.00000000001  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_2102  CRP/FNR family transcriptional regulator  35.54 
 
 
227 aa  70.1  0.00000000001  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  33.91 
 
 
226 aa  70.1  0.00000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  36.11 
 
 
224 aa  69.7  0.00000000001  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  30.83 
 
 
243 aa  69.3  0.00000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_007347  Reut_A0894  cyclic nucleotide-binding  37.65 
 
 
226 aa  68.9  0.00000000002  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_0173  cyclic nucleotide-binding domain-containing protein  34.13 
 
 
211 aa  68.6  0.00000000003  Polaromonas sp. JS666  Bacteria  normal  0.106244  normal 
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  29.32 
 
 
242 aa  68.2  0.00000000004  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  29.23 
 
 
225 aa  67.8  0.00000000004  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  28.78 
 
 
226 aa  67.4  0.00000000006  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_007413  Ava_3692  cyclic nucleotide-binding domain-containing protein  38.95 
 
 
146 aa  67  0.00000000009  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_0772  cyclic nucleotide-binding protein  31.3 
 
 
164 aa  66.2  0.0000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_1294  cyclic nucleotide-binding: regulatory protein, Crp  32.46 
 
 
220 aa  65.9  0.0000000002  Dechloromonas aromatica RCB  Bacteria  normal  0.957461  normal  0.413121 
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  31.01 
 
 
224 aa  65.5  0.0000000002  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_008782  Ajs_0419  cyclic nucleotide-binding protein  30.33 
 
 
209 aa  65.5  0.0000000002  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0411  cyclic nucleotide-binding protein  30.33 
 
 
209 aa  65.9  0.0000000002  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  28.06 
 
 
226 aa  65.9  0.0000000002  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_009565  TBFG_13707  Cpr/FNR family transcriptional regulator  26.89 
 
 
224 aa  65.5  0.0000000002  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0333343 
 
 
-
 
NC_009727  CBUD_1472  CAAX amino terminal protease family  35.09 
 
 
381 aa  65.9  0.0000000002  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  0.407531  n/a   
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  28.87 
 
 
231 aa  65.1  0.0000000003  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  32.71 
 
 
225 aa  65.1  0.0000000003  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_0234  cyclic nucleotide-binding domain-containing protein  26.97 
 
 
186 aa  65.5  0.0000000003  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  25.81 
 
 
247 aa  64.7  0.0000000004  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0559  Crp/FNR family transcriptional regulator  34.02 
 
 
225 aa  64.7  0.0000000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.338488  normal  0.42035 
 
 
-
 
NC_008048  Sala_1169  Crp/FNR family transcriptional regulator  30 
 
 
227 aa  64.7  0.0000000004  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.0303416  normal  0.0506186 
 
 
-
 
NC_009511  Swit_2706  Crp/FNR family transcriptional regulator  30.83 
 
 
228 aa  64.3  0.0000000005  Sphingomonas wittichii RW1  Bacteria  normal  0.154877  normal 
 
 
-
 
NC_008312  Tery_2905  cyclic nucleotide-binding protein  33.83 
 
 
157 aa  64.3  0.0000000005  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0600936 
 
 
-
 
NC_013161  Cyan8802_3370  putative transcriptional regulator, Crp/Fnr family  36.75 
 
 
425 aa  63.9  0.0000000006  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  29.91 
 
 
220 aa  63.9  0.0000000006  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_011726  PCC8801_2732  cyclic nucleotide-binding protein  36.75 
 
 
425 aa  63.9  0.0000000006  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  29.41 
 
 
228 aa  63.9  0.0000000006  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_013441  Gbro_0505  cyclic nucleotide-binding protein  26.89 
 
 
224 aa  63.9  0.0000000008  Gordonia bronchialis DSM 43247  Bacteria  normal  0.287437  n/a   
 
 
-
 
NC_013730  Slin_5025  putative transcriptional regulator, Crp/Fnr family  37.3 
 
 
1056 aa  63.9  0.0000000008  Spirosoma linguale DSM 74  Bacteria  decreased coverage  0.00524189  normal 
 
 
-
 
NC_013946  Mrub_2129  Crp/Fnr family transcriptional regulator  30.94 
 
 
225 aa  63.5  0.0000000009  Meiothermus ruber DSM 1279  Bacteria  normal  0.185639  normal  0.344505 
 
 
-
 
NC_014212  Mesil_2074  transcriptional regulator, Crp/Fnr family  31.65 
 
 
225 aa  63.2  0.000000001  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.971908 
 
 
-
 
NC_008726  Mvan_5435  CRP/FNR family transcriptional regulator  26.05 
 
 
224 aa  62.8  0.000000001  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.397858 
 
 
-
 
NC_009077  Mjls_5205  Crp/FNR family transcriptional regulator  26.05 
 
 
224 aa  63.2  0.000000001  Mycobacterium sp. JLS  Bacteria  normal  0.703662  hitchhiker  0.000819508 
 
 
-
 
NC_009338  Mflv_1371  CRP/FNR family transcriptional regulator  26.05 
 
 
224 aa  62.8  0.000000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0955358 
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  31.3 
 
 
226 aa  63.2  0.000000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_008146  Mmcs_4818  Crp/FNR family transcriptional regulator  26.05 
 
 
224 aa  63.2  0.000000001  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_6450  putative transcriptional regulator, Crp/Fnr family  32.17 
 
 
253 aa  63.2  0.000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_2845  cyclic nucleotide-binding domain-containing protein  28.06 
 
 
226 aa  63.2  0.000000001  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2531  cyclic nucleotide-binding domain-containing protein  26.81 
 
 
226 aa  62.8  0.000000001  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4904  Crp/FNR family transcriptional regulator  26.05 
 
 
224 aa  63.2  0.000000001  Mycobacterium sp. KMS  Bacteria  normal  normal  0.385516 
 
 
-
 
NC_007517  Gmet_0750  Crp/FNR family transcriptional regulator  30.51 
 
 
238 aa  62.4  0.000000002  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_4039  cyclic nucleotide-binding protein  32.46 
 
 
161 aa  62  0.000000002  Methylobacterium sp. 4-46  Bacteria  normal  0.17311  normal 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  26.52 
 
 
224 aa  62  0.000000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_3831  cyclic nucleotide-binding protein  29.32 
 
 
435 aa  62  0.000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0387698 
 
 
-
 
NC_009380  Strop_3269  CRP/FNR family transcriptional regulator  33.01 
 
 
230 aa  62  0.000000002  Salinispora tropica CNB-440  Bacteria  normal  0.883713  normal 
 
 
-
 
NC_013235  Namu_0718  transcriptional regulator, Crp/Fnr family  29.66 
 
 
224 aa  62.4  0.000000002  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_0296  cyclic nucleotide-binding protein  31.03 
 
 
624 aa  62.4  0.000000002  Frankia sp. EAN1pec  Bacteria  normal  normal  0.339618 
 
 
-
 
NC_011004  Rpal_4520  transcriptional regulator, Crp/Fnr family  29.57 
 
 
236 aa  62.8  0.000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2444  Crp/FNR family transcriptional regulator  30.56 
 
 
238 aa  62.8  0.000000002  Pelobacter propionicus DSM 2379  Bacteria  decreased coverage  0.000577484  n/a   
 
 
-
 
NC_009972  Haur_0049  Crp/FNR family transcriptional regulator  29.5 
 
 
252 aa  62  0.000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.422683  n/a   
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  30.15 
 
 
231 aa  62  0.000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_007947  Mfla_1926  cyclic nucleotide-binding domain-containing protein  36.63 
 
 
168 aa  61.6  0.000000003  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_3499  Crp/FNR family transcriptional regulator  33.01 
 
 
230 aa  62  0.000000003  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00506626 
 
 
-
 
NC_008752  Aave_0636  cyclic nucleotide-binding protein  29.51 
 
 
212 aa  61.6  0.000000004  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_4027  cyclic nucleotide-binding protein  31.11 
 
 
413 aa  61.2  0.000000004  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_1954  putative Crp/Fnr family transcriptional regulator  32.77 
 
 
141 aa  61.2  0.000000005  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_3932  transcriptional regulator, Crp/Fnr family  26.89 
 
 
224 aa  60.8  0.000000006  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.571672  n/a   
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  32.74 
 
 
225 aa  60.5  0.000000007  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  30.63 
 
 
225 aa  60.5  0.000000007  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_00758  putative transcriptional regulator (Crp family) protein  28.03 
 
 
223 aa  60.5  0.000000008  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_0755  transcriptional regulator, Crp/Fnr family  24.39 
 
 
223 aa  60.1  0.000000009  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.125698 
 
 
-
 
NC_002967  TDE2616  cyclic nucleotide-binding protein  32.63 
 
 
219 aa  59.7  0.00000001  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_0127  Crp/FNR family transcriptional regulator  28.16 
 
 
222 aa  59.3  0.00000001  Synechococcus elongatus PCC 7942  Bacteria  normal  0.867755  normal  0.325855 
 
 
-
 
NC_007604  Synpcc7942_1814  cyclic nucleotide-binding domain-containing protein  31.16 
 
 
242 aa  59.7  0.00000001  Synechococcus elongatus PCC 7942  Bacteria  normal  0.38579  normal  0.245711 
 
 
-
 
NC_011894  Mnod_7320  cyclic nucleotide-binding protein  31.25 
 
 
169 aa  59.7  0.00000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.376819  n/a   
 
 
-
 
NC_013131  Caci_8903  transcriptional regulator, Crp/Fnr family  33.68 
 
 
224 aa  60.1  0.00000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  33.33 
 
 
219 aa  59.7  0.00000001  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_012918  GM21_3198  transcriptional regulator, Crp/Fnr family  30.71 
 
 
221 aa  60.1  0.00000001  Geobacter sp. M21  Bacteria  n/a    normal  0.90573 
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  30 
 
 
231 aa  58.9  0.00000002  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  25.74 
 
 
229 aa  58.9  0.00000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_3368  putative transcriptional regulator, Crp/Fnr family  28.87 
 
 
503 aa  58.9  0.00000002  Haliangium ochraceum DSM 14365  Bacteria  decreased coverage  0.00879958  normal  0.135189 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  28.57 
 
 
226 aa  59.3  0.00000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_012918  GM21_2448  transcriptional regulator, Crp/Fnr family  29.66 
 
 
238 aa  59.3  0.00000002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  26.12 
 
 
225 aa  58.9  0.00000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_0718  cyclic nucleotide-binding  29.91 
 
 
747 aa  58.9  0.00000002  Polaromonas sp. JS666  Bacteria  hitchhiker  0.00567448  normal 
 
 
-
 
NC_008781  Pnap_0116  cyclic nucleotide-binding protein  32.79 
 
 
194 aa  58.9  0.00000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.143738 
 
 
-
 
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