15 homologs were found in PanDaTox collection
for query gene PP_3894 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_002947  PP_3894  phage replication protein O, putative  100 
 
 		 276 aa  578  1e-164  Pseudomonas putida KT2440  Bacteria  normal  1  hitchhiker  0.00393455 
 
 
-
 
NC_009436  Ent638_0784  phage replication protein O  29.32 
 
 		 269 aa  82.4  0.000000000000008  Enterobacter sp. 638  Bacteria  normal  0.133854  hitchhiker  0.00108821 
 
 
-
 
NC_011353  ECH74115_2921  replication of DNA  26.67 
 
 		 273 aa  80.9  0.00000000000002  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.274464  hitchhiker  6.39526e-16 
 
 
-
 
NC_009512  Pput_4130  phage replication protein O  25.53 
 
 		 285 aa  78.6  0.0000000000001  Pseudomonas putida F1  Bacteria  normal  0.763522  normal  0.367122 
 
 
-
 
NC_002947  PP_1551  phage replication protein O, putative  33.62 
 
 		 284 aa  75.1  0.000000000001  Pseudomonas putida KT2440  Bacteria  normal  1  decreased coverage  0.0000336071 
 
 
-
 
NC_011205  SeD_A0624  DNA replication protein gp18  27.51 
 
 		 277 aa  75.1  0.000000000001  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  1  decreased coverage  0.00127495 
 
 
-
 
NC_011083  SeHA_C0384  DNA replication protein gp18  24.06 
 
 		 271 aa  61.2  0.00000002  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.0966455  hitchhiker  0.00000000000236015 
 
 
-
 
NC_011094  SeSA_A0620  gp59  32.69 
 
 		 286 aa  56.2  0.0000006  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0966725  decreased coverage  0.000000533043 
 
 
-
 
NC_011080  SNSL254_A1053  gifsy-1 prophage PrpO  34.44 
 
 		 327 aa  46.2  0.0005  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.0283915  hitchhiker  0.00000186889 
 
 
-
 
NC_011083  SeHA_C1119  replication protein O  31.33 
 
 		 301 aa  46.6  0.0005  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.676639  normal  0.807311 
 
 
-
 
NC_011205  SeD_A1083  gifsy-1 prophage PrpO  34.44 
 
 		 327 aa  46.2  0.0005  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  hitchhiker  0.00906063  hitchhiker  0.00000468495 
 
 
-
 
NC_011094  SeSA_A2284  gifsy-1 prophage PrpO  34.44 
 
 		 325 aa  46.2  0.0006  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0857509  normal  0.0949977 
 
 
-
 
CP001509  ECD_10024  DNA replication protein  29.55 
 
 		 299 aa  43.5  0.004  Escherichia coli BL21(DE3)  Bacteria  normal  0.222522  n/a   
 
 
-
 
NC_011353  ECH74115_3553  replication protein O  29.55 
 
 		 312 aa  43.5  0.004  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.609117  hitchhiker  1.07069e-17 
 
 
-
 
NC_012892  B21_00721  hypothetical protein  29.55 
 
 		 299 aa  43.5  0.004  Escherichia coli BL21  Bacteria  normal  0.180512  n/a   
 
 
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