More than 300 homologs were found in PanDaTox collection
for query gene PP_2216 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_2216  acyl-CoA dehydrogenase domain-containing protein  100 
 
 
375 aa  770  Pseudomonas putida KT2440  Bacteria  normal  0.585123  normal 
 
 
-
 
NC_007492  Pfl01_2867  Acyl-CoA dehydrogenase-like  86.67 
 
 
375 aa  682  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.967944  normal  0.115681 
 
 
-
 
NC_010501  PputW619_3455  acyl-CoA dehydrogenase domain-containing protein  93.33 
 
 
375 aa  725  Pseudomonas putida W619  Bacteria  normal  normal  0.129524 
 
 
-
 
NC_009512  Pput_3522  acyl-CoA dehydrogenase domain-containing protein  99.47 
 
 
375 aa  768  Pseudomonas putida F1  Bacteria  normal  normal  0.0559083 
 
 
-
 
NC_010322  PputGB1_1842  acyl-CoA dehydrogenase domain-containing protein  95.47 
 
 
375 aa  739  Pseudomonas putida GB-1  Bacteria  normal  0.0292697  normal  0.208883 
 
 
-
 
NC_009656  PSPA7_2684  putative acyl-CoA dehydrogenase  79.2 
 
 
375 aa  631  1e-180  Pseudomonas aeruginosa PA7  Bacteria  normal  0.126402  n/a   
 
 
-
 
NC_008463  PA14_31540  putative acyl-CoA dehydrogenase  78.4 
 
 
375 aa  626  1e-178  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.430124  hitchhiker  9.5284e-05 
 
 
-
 
NC_009439  Pmen_2037  acyl-CoA dehydrogenase domain-containing protein  78.13 
 
 
375 aa  619  1e-176  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.666233 
 
 
-
 
NC_009504  BOV_A0391  acyl-CoA dehydrogenase  75.47 
 
 
375 aa  592  1e-168  Brucella ovis ATCC 25840  Bacteria  normal  0.31925  n/a   
 
 
-
 
NC_004311  BRA0447  acyl-CoA dehydrogenase  75.2 
 
 
375 aa  590  1e-167  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_012854  Rleg_6504  acyl-CoA dehydrogenase domain protein  72.8 
 
 
375 aa  581  1e-165  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.285028  normal  0.547313 
 
 
-
 
NC_011368  Rleg2_4384  acyl-CoA dehydrogenase domain protein  73.07 
 
 
375 aa  584  1e-165  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.17615  normal 
 
 
-
 
NC_007958  RPD_3106  acyl-CoA dehydrogenase-like  73.33 
 
 
375 aa  573  1e-162  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0271451 
 
 
-
 
NC_011004  Rpal_2548  acyl-CoA dehydrogenase domain protein  72.8 
 
 
375 aa  571  1e-162  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.314153  n/a   
 
 
-
 
NC_009668  Oant_3106  acyl-CoA dehydrogenase domain-containing protein  74.13 
 
 
375 aa  569  1e-161  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.332334  n/a   
 
 
-
 
NC_008687  Pden_2906  acyl-CoA dehydrogenase domain-containing protein  71.47 
 
 
375 aa  548  1e-155  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_4666  acyl-CoA dehydrogenase domain-containing protein  70.93 
 
 
375 aa  546  1e-154  Xanthobacter autotrophicus Py2  Bacteria  normal  0.815528  normal  0.395379 
 
 
-
 
NC_011894  Mnod_3635  acyl-CoA dehydrogenase domain protein  68.98 
 
 
376 aa  519  1e-146  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_3936  acyl-CoA dehydrogenase domain-containing protein  69.52 
 
 
376 aa  518  1e-146  Methylobacterium sp. 4-46  Bacteria  normal  0.132156  decreased coverage  0.00760667 
 
 
-
 
NC_011662  Tmz1t_0733  acyl-CoA dehydrogenase domain protein  64 
 
 
377 aa  517  1e-145  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_0459  acyl-CoA dehydrogenase domain-containing protein  66.4 
 
 
376 aa  517  1e-145  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4185  acyl-CoA dehydrogenase-like  66.4 
 
 
376 aa  513  1e-144  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3838  acyl-CoA dehydrogenase-like  66.67 
 
 
376 aa  513  1e-144  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A0140  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal  68 
 
 
376 aa  509  1e-143  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A4257  putative acyl-CoA dehydrogenase  64.8 
 
 
376 aa  508  1e-143  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.217203 
 
 
-
 
NC_012791  Vapar_4730  acyl-CoA dehydrogenase domain protein  65.87 
 
 
376 aa  506  1e-142  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_0459  acyl-CoA dehydrogenase domain protein  65.07 
 
 
376 aa  506  1e-142  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.672922 
 
 
-
 
NC_007298  Daro_0096  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal  62.93 
 
 
378 aa  503  1e-141  Dechloromonas aromatica RCB  Bacteria  normal  0.0160842  normal 
 
 
-
 
NC_011992  Dtpsy_3052  acyl-CoA dehydrogenase domain protein  64 
 
 
376 aa  498  1e-140  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3774  acyl-CoA dehydrogenase domain-containing protein  64 
 
 
376 aa  498  1e-140  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_0108  acyl-CoA dehydrogenase-like protein  66.4 
 
 
376 aa  499  1e-140  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5985  acyl-CoA dehydrogenase domain-containing protein  63.2 
 
 
376 aa  496  1e-139  Delftia acidovorans SPH-1  Bacteria  normal  hitchhiker  0.00997774 
 
 
-
 
NC_008752  Aave_4365  acyl-CoA dehydrogenase domain-containing protein  63.2 
 
 
376 aa  493  1e-138  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_4385  acyl-CoA dehydrogenase domain-containing protein  63.37 
 
 
377 aa  489  1e-137  Burkholderia ambifaria AMMD  Bacteria  normal  0.351154  normal  0.113053 
 
 
-
 
NC_012857  Rpic12D_4086  acyl-CoA dehydrogenase domain protein  63.98 
 
 
377 aa  489  1e-137  Ralstonia pickettii 12D  Bacteria  normal  0.303595  normal  0.349393 
 
 
-
 
NC_010678  Rpic_3973  acyl-CoA dehydrogenase domain protein  63.98 
 
 
377 aa  489  1e-137  Ralstonia pickettii 12J  Bacteria  normal  0.78306  normal  0.788161 
 
 
-
 
NC_010552  BamMC406_4904  acyl-CoA dehydrogenase domain-containing protein  63.64 
 
 
377 aa  489  1e-137  Burkholderia ambifaria MC40-6  Bacteria  normal  0.316996  normal  0.149852 
 
 
-
 
NC_007511  Bcep18194_B0714  Acyl-CoA dehydrogenase  63.37 
 
 
377 aa  491  1e-137  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_4963  acyl-CoA dehydrogenase domain-containing protein  63.1 
 
 
377 aa  486  1e-136  Burkholderia cenocepacia HI2424  Bacteria  normal  0.398605  normal  0.378723 
 
 
-
 
NC_010086  Bmul_3656  acyl-CoA dehydrogenase domain-containing protein  62.83 
 
 
377 aa  485  1e-136  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_5126  acyl-CoA dehydrogenase domain-containing protein  62.9 
 
 
377 aa  487  1e-136  Burkholderia phymatum STM815  Bacteria  normal  normal  0.393324 
 
 
-
 
NC_007952  Bxe_B1084  butyryl-CoA dehydrogenase  63.17 
 
 
377 aa  487  1e-136  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.0155468 
 
 
-
 
NC_008061  Bcen_3404  acyl-CoA dehydrogenase-like  63.1 
 
 
377 aa  486  1e-136  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_5323  acyl-CoA dehydrogenase domain-containing protein  63.1 
 
 
377 aa  487  1e-136  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.00118834  normal  0.0149252 
 
 
-
 
NC_010676  Bphyt_5650  acyl-CoA dehydrogenase domain protein  63.17 
 
 
377 aa  487  1e-136  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0124  acyl-CoA dehydrogenase domain protein  64.27 
 
 
376 aa  483  1e-135  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A3574  putative acyl-CoA dehydrogenase  61.56 
 
 
377 aa  481  1e-135  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_0132  acyl-CoA dehydrogenase domain protein  64.27 
 
 
376 aa  481  1e-134  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_4207  acyl-CoA dehydrogenase domain-containing protein  62.4 
 
 
376 aa  477  1e-133  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  4.98045e-05 
 
 
-
 
NC_007953  Bxe_C0247  Acyl-CoA dehydrogenase  61.83 
 
 
378 aa  477  1e-133  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc0274  putative acyl CoA dehydrogenase oxidoreductase protein  62.93 
 
 
376 aa  473  1e-132  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0244917  normal 
 
 
-
 
NC_003296  RS05570  acyl-CoA dehydrogenase oxidoreductase protein  64.25 
 
 
377 aa  473  1e-132  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.213032 
 
 
-
 
NC_007348  Reut_B4257  butyryl-CoA dehydrogenase  61.29 
 
 
377 aa  471  1e-131  Ralstonia eutropha JMP134  Bacteria  normal  0.725306  n/a   
 
 
-
 
NC_010622  Bphy_0176  acyl-CoA dehydrogenase domain-containing protein  66.13 
 
 
376 aa  469  1e-131  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_1555  acyl-CoA dehydrogenase domain-containing protein  58.45 
 
 
383 aa  458  1e-128  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2865  Acyl-CoA dehydrogenase-like  58.45 
 
 
383 aa  459  1e-128  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0509295  normal  0.212771 
 
 
-
 
NC_007650  BTH_II1803  acyl-CoA dehydrogenase  60.96 
 
 
377 aa  457  1e-127  Burkholderia thailandensis E264  Bacteria  normal  0.545777  n/a   
 
 
-
 
NC_009075  BURPS668_A0918  acyl-CoA dehydrogenase  60.96 
 
 
377 aa  455  1e-127  Burkholderia pseudomallei 668  Bacteria  normal  0.993966  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0826  acyl-CoA dehydrogenase  60.43 
 
 
377 aa  452  1e-126  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2178  acyl-CoA dehydrogenase  60.43 
 
 
377 aa  452  1e-126  Burkholderia pseudomallei 1710b  Bacteria  normal  0.480909  n/a   
 
 
-
 
NC_010322  PputGB1_2436  acyl-CoA dehydrogenase domain-containing protein  57.91 
 
 
383 aa  452  1e-126  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_3603  acyl-CoA dehydrogenase domain-containing protein  62.77 
 
 
375 aa  454  1e-126  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.323372 
 
 
-
 
NC_009512  Pput_2279  acyl-CoA dehydrogenase domain-containing protein  57.91 
 
 
383 aa  451  1e-125  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3492  acyl-CoA dehydrogenase domain-containing protein  57.64 
 
 
383 aa  451  1e-125  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2885  acyl-CoA dehydrogenase domain-containing protein  57.91 
 
 
383 aa  450  1e-125  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_007494  RSP_3182  Acyl-CoA dehydrogenase  59.63 
 
 
377 aa  434  1e-121  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1769  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal  57.37 
 
 
383 aa  434  1e-121  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_3706  acyl-CoA dehydrogenase  57.64 
 
 
383 aa  437  1e-121  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_10680  acyl-CoA dehydrogenase  57.1 
 
 
383 aa  433  1e-120  Azotobacter vinelandii DJ  Bacteria  normal  0.270304  n/a   
 
 
-
 
NC_009050  Rsph17029_3919  acyl-CoA dehydrogenase domain-containing protein  59.09 
 
 
377 aa  432  1e-120  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0604342  normal 
 
 
-
 
NC_010676  Bphyt_5108  acyl-CoA dehydrogenase domain protein  53.48 
 
 
381 aa  405  1e-112  Burkholderia phytofirmans PsJN  Bacteria  normal  0.671033  normal 
 
 
-
 
NC_011773  BCAH820_5435  acyl-CoA dehydrogenase  52.69 
 
 
376 aa  406  1e-112  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  5.29924e-10 
 
 
-
 
NC_007530  GBAA_5587  acyl-CoA dehydrogenase  52.69 
 
 
376 aa  406  1e-112  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_5026  short-chain acyl-CoA dehydrogenase; butyryl-CoA dehydrogenase  52.69 
 
 
376 aa  406  1e-112  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5191  acyl-CoA dehydrogenase  52.69 
 
 
376 aa  406  1e-112  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2136  acyl-CoA dehydrogenase domain-containing protein  51.35 
 
 
380 aa  402  1e-111  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.281355 
 
 
-
 
NC_011658  BCAH187_A5520  acyl-CoA dehydrogenase  52.42 
 
 
381 aa  404  1e-111  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A5465  acyl-CoA dehydrogenase  52.15 
 
 
381 aa  402  1e-111  Bacillus cereus B4264  Bacteria  hitchhiker  0.000680329  n/a   
 
 
-
 
NC_003909  BCE_5473  acyl-CoA dehydrogenase  52.42 
 
 
376 aa  404  1e-111  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK5042  short-chain acyl-CoA dehydrogenase; butyryl-CoA dehydrogenase  52.42 
 
 
376 aa  404  1e-111  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5487  acyl-CoA dehydrogenase  51.61 
 
 
381 aa  399  1e-110  Bacillus cereus G9842  Bacteria  normal  0.0302943  hitchhiker  1.44799e-22 
 
 
-
 
NC_009674  Bcer98_3863  acyl-CoA dehydrogenase domain-containing protein  52.15 
 
 
376 aa  399  1e-110  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_3342  acyl-CoA dehydrogenase domain protein  51.74 
 
 
379 aa  394  1e-108  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5140  acyl-CoA dehydrogenase domain-containing protein  51.08 
 
 
376 aa  392  1e-108  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2281  acyl-CoA dehydrogenase domain protein  51.08 
 
 
380 aa  390  1e-107  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2192  acyl-CoA dehydrogenase domain protein  51.08 
 
 
380 aa  387  1e-106  Anaeromyxobacter sp. K  Bacteria  normal  0.516178  n/a   
 
 
-
 
NC_007760  Adeh_1665  butyryl-CoA dehydrogenase  50.54 
 
 
380 aa  384  1e-105  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2137  acyl-CoA dehydrogenase domain-containing protein  54.42 
 
 
382 aa  382  1e-105  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.545271  normal  0.220827 
 
 
-
 
NC_013440  Hoch_3778  acyl-CoA dehydrogenase domain protein  48.53 
 
 
382 aa  381  1e-104  Haliangium ochraceum DSM 14365  Bacteria  normal  0.341587  normal  0.271407 
 
 
-
 
NC_011658  BCAH187_A5519  acyl-CoA dehydrogenase  47.99 
 
 
379 aa  378  1e-104  Bacillus cereus AH187  Bacteria  normal  0.814074  n/a   
 
 
-
 
NC_011772  BCG9842_B5488  acyl-CoA dehydrogenase  47.45 
 
 
379 aa  379  1e-104  Bacillus cereus G9842  Bacteria  normal  0.270181  hitchhiker  1.62736e-22 
 
 
-
 
NC_011725  BCB4264_A5464  acyl-CoA dehydrogenase  47.45 
 
 
379 aa  379  1e-104  Bacillus cereus B4264  Bacteria  unclonable  6.08426e-05  n/a   
 
 
-
 
NC_010718  Nther_1881  butyryl-CoA dehydrogenase  45.84 
 
 
379 aa  378  1e-103  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.593492  normal  0.222475 
 
 
-
 
NC_006274  BCZK5041  acyl-CoA dehydrogenase  47.99 
 
 
379 aa  378  1e-103  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_5025  butyryl-CoA dehydrogenase (short-chain acyl-CoA dehydrogenase)  47.99 
 
 
379 aa  376  1e-103  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_3341  acyl-CoA dehydrogenase domain protein  49.33 
 
 
379 aa  377  1e-103  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5586  acyl-CoA dehydrogenase  47.99 
 
 
379 aa  376  1e-103  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_2865  acyl-CoA dehydrogenase domain protein  50.94 
 
 
389 aa  376  1e-103  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5190  acyl-CoA dehydrogenase  47.99 
 
 
379 aa  376  1e-103  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5472  acyl-CoA dehydrogenase  47.99 
 
 
379 aa  378  1e-103  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
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