More than 300 homologs were found in PanDaTox collection
for query gene PP_2111 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_2111  aerotaxis receptor Aer-2  100 
 
 
521 aa  1064    Pseudomonas putida KT2440  Bacteria  normal  normal  0.0317394 
 
 
-
 
NC_009512  Pput_3628  methyl-accepting chemotaxis sensory transducer  99.62 
 
 
521 aa  1063    Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_1630  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  95.59 
 
 
521 aa  1031    Pseudomonas putida W619  Bacteria  normal  normal  0.814601 
 
 
-
 
NC_010322  PputGB1_1653  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  99.04 
 
 
521 aa  1055    Pseudomonas putida GB-1  Bacteria  normal  0.976535  normal  0.292811 
 
 
-
 
NC_004578  PSPTO_2014  aerotaxis receptor  81.57 
 
 
521 aa  885    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3406  PAS  82.15 
 
 
521 aa  891    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.387271  normal  0.671486 
 
 
-
 
NC_007492  Pfl01_1833  chemotaxis sensory transducer, Pas/Pac sensor  86.18 
 
 
521 aa  933    Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.884809  normal 
 
 
-
 
NC_008463  PA14_44300  aerotaxis receptor Aer  77.93 
 
 
521 aa  843    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1902  methyl-accepting chemotaxis sensory transducer  77.54 
 
 
521 aa  848    Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00326538  normal  0.948878 
 
 
-
 
NC_009656  PSPA7_3770  aerotaxis receptor Aer  77.35 
 
 
521 aa  837    Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1800  methyl-accepting chemotaxis sensory transducer  50.86 
 
 
521 aa  514  1e-144  Pseudomonas mendocina ymp  Bacteria  normal  0.258308  normal  0.504821 
 
 
-
 
NC_004578  PSPTO_1648  aerotaxis receptor  50.19 
 
 
521 aa  495  1e-139  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3735  PAS  50.77 
 
 
521 aa  497  1e-139  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.065462 
 
 
-
 
NC_009512  Pput_1390  methyl-accepting chemotaxis sensory transducer  50 
 
 
534 aa  489  1e-137  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_4027  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  49.43 
 
 
521 aa  486  1e-136  Pseudomonas putida GB-1  Bacteria  normal  0.664053  normal  0.0821551 
 
 
-
 
NC_002947  PP_4521  aerotaxis receptor, putative  49.62 
 
 
521 aa  487  1e-136  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_3813  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  49.25 
 
 
521 aa  480  1e-134  Pseudomonas putida W619  Bacteria  normal  0.629648  normal  0.0156802 
 
 
-
 
NC_009438  Sputcn32_3109  methyl-accepting chemotaxis sensory transducer  46.29 
 
 
522 aa  453  1.0000000000000001e-126  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_0262  methyl-accepting chemotaxis sensory transducer  45.79 
 
 
524 aa  439  9.999999999999999e-123  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1324  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  45.61 
 
 
523 aa  436  1e-121  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.587106  n/a   
 
 
-
 
NC_009512  Pput_3481  methyl-accepting chemotaxis sensory transducer  46.67 
 
 
521 aa  430  1e-119  Pseudomonas putida F1  Bacteria  normal  normal  0.41765 
 
 
-
 
NC_002947  PP_2257  aerotaxis receptor Aer-1  46.3 
 
 
521 aa  429  1e-119  Pseudomonas putida KT2440  Bacteria  normal  0.215452  normal  0.0215353 
 
 
-
 
NC_010322  PputGB1_1888  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  46.46 
 
 
521 aa  424  1e-117  Pseudomonas putida GB-1  Bacteria  normal  0.378373  normal 
 
 
-
 
NC_009654  Mmwyl1_3595  methyl-accepting chemotaxis sensory transducer  42.97 
 
 
515 aa  412  1e-114  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1214  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  41.24 
 
 
527 aa  406  1.0000000000000001e-112  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4658  chemotaxis sensory transducer, Pas/Pac sensor  43.02 
 
 
529 aa  395  1e-109  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_03783  Methyl-accepting chemotaxis protein (PAS/PAC and MSP doamins)  41.41 
 
 
527 aa  396  1e-109  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0580  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  41.37 
 
 
521 aa  384  1e-105  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0413099 
 
 
-
 
NC_009901  Spea_1860  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  39.66 
 
 
524 aa  380  1e-104  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_4186  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  39.28 
 
 
526 aa  369  1e-101  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_0582  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  40.71 
 
 
524 aa  371  1e-101  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0583  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  40.34 
 
 
524 aa  371  1e-101  Shewanella sp. MR-4  Bacteria  normal  normal  0.344402 
 
 
-
 
NC_008322  Shewmr7_3447  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  40.34 
 
 
524 aa  371  1e-101  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3725  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  39.47 
 
 
524 aa  367  1e-100  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_3782  methyl-accepting chemotaxis sensory transducer  39.28 
 
 
524 aa  365  1e-100  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0543  methyl-accepting chemotaxis sensory transducer  39.47 
 
 
524 aa  367  1e-100  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3908  methyl-accepting chemotaxis sensory transducer  39.47 
 
 
524 aa  367  1e-100  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_3294  methyl-accepting chemotaxis sensory transducer  39.59 
 
 
524 aa  363  3e-99  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3460  methyl-accepting chemotaxis sensory transducer  38.12 
 
 
520 aa  362  8e-99  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_0584  methyl-accepting chemotaxis protein  39.09 
 
 
524 aa  360  3e-98  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009456  VC0395_0250  methyl-accepting chemotaxis protein  37.62 
 
 
518 aa  358  1.9999999999999998e-97  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_0389  methyl-accepting chemotaxis sensory transducer  46.45 
 
 
419 aa  357  3.9999999999999996e-97  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4451  methyl-accepting chemotaxis sensory transducer  43.62 
 
 
531 aa  340  4e-92  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2159  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  38.48 
 
 
523 aa  339  7e-92  Shewanella loihica PV-4  Bacteria  normal  0.416992  normal  0.881373 
 
 
-
 
NC_008789  Hhal_0974  methyl-accepting chemotaxis sensory transducer  39.77 
 
 
532 aa  338  1.9999999999999998e-91  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2690  methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor  36.26 
 
 
524 aa  335  1e-90  Shewanella sediminis HAW-EB3  Bacteria  normal  0.487789  normal 
 
 
-
 
NC_008345  Sfri_3219  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.93 
 
 
516 aa  322  9.999999999999999e-87  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.1353  n/a   
 
 
-
 
NC_013457  VEA_001512  aerotaxis sensor receptor protein  35 
 
 
516 aa  319  7e-86  Vibrio sp. Ex25  Bacteria  normal  0.961146  n/a   
 
 
-
 
NC_008789  Hhal_1125  methyl-accepting chemotaxis sensory transducer  38.01 
 
 
532 aa  315  9.999999999999999e-85  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3270  methyl-accepting chemotaxis sensory transducer  35.67 
 
 
532 aa  314  1.9999999999999998e-84  Marinobacter aquaeolei VT8  Bacteria  normal  0.415489  n/a   
 
 
-
 
NC_009901  Spea_3023  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  37.1 
 
 
514 aa  308  1.0000000000000001e-82  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_1282  methyl-accepting chemotaxis sensory transducer  36.9 
 
 
522 aa  308  2.0000000000000002e-82  Shewanella baltica OS185  Bacteria  normal  0.13527  n/a   
 
 
-
 
NC_003910  CPS_4927  methyl-accepting chemotaxis protein/sensory box protein  37.67 
 
 
511 aa  307  4.0000000000000004e-82  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_1385  methyl-accepting chemotaxis protein  36.52 
 
 
520 aa  306  8.000000000000001e-82  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_2577  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  37.88 
 
 
524 aa  305  9.000000000000001e-82  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_1238  methyl-accepting chemotaxis sensory transducer  36.9 
 
 
522 aa  305  1.0000000000000001e-81  Shewanella baltica OS155  Bacteria  normal  0.0615962  n/a   
 
 
-
 
NC_011663  Sbal223_3073  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.9 
 
 
522 aa  305  1.0000000000000001e-81  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.000000000166485 
 
 
-
 
NC_008321  Shewmr4_2808  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.49 
 
 
522 aa  305  1.0000000000000001e-81  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_2891  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.49 
 
 
522 aa  305  1.0000000000000001e-81  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_2987  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.82 
 
 
522 aa  303  5.000000000000001e-81  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_0532  putative methyl-accepting chemotaxis sensory transducer  36.9 
 
 
523 aa  303  7.000000000000001e-81  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.0374128 
 
 
-
 
NC_009438  Sputcn32_1196  methyl-accepting chemotaxis sensory transducer  36.21 
 
 
522 aa  302  7.000000000000001e-81  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2726  methyl-accepting chemotaxis sensory transducer  36.91 
 
 
538 aa  302  1e-80  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1317  methyl-accepting chemotaxis sensory transducer  36.71 
 
 
522 aa  301  1e-80  Shewanella baltica OS195  Bacteria  normal  normal  0.0176898 
 
 
-
 
NC_010506  Swoo_3519  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.55 
 
 
514 aa  301  2e-80  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_1987  methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor  35.25 
 
 
518 aa  298  1e-79  Shewanella sediminis HAW-EB3  Bacteria  normal  0.185607  normal  0.0170041 
 
 
-
 
NC_009665  Shew185_3097  methyl-accepting chemotaxis sensory transducer  35.48 
 
 
522 aa  296  6e-79  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3240  methyl-accepting chemotaxis sensory transducer  35.06 
 
 
533 aa  295  1e-78  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_1280  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.48 
 
 
522 aa  295  1e-78  Shewanella baltica OS223  Bacteria  normal  normal  0.160306 
 
 
-
 
NC_008321  Shewmr4_1149  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.19 
 
 
522 aa  295  1e-78  Shewanella sp. MR-4  Bacteria  normal  0.737349  normal 
 
 
-
 
NC_008322  Shewmr7_1220  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.74 
 
 
522 aa  294  3e-78  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1150  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.74 
 
 
522 aa  293  7e-78  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3087  methyl-accepting chemotaxis sensory transducer  35.06 
 
 
522 aa  293  8e-78  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_0995  putative methyl-accepting chemotaxis sensory transducer  35.82 
 
 
517 aa  292  1e-77  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_3404  methyl-accepting chemotaxis protein  35.84 
 
 
522 aa  290  6e-77  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_0337  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  33.97 
 
 
517 aa  289  1e-76  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2247  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.14 
 
 
511 aa  288  1e-76  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1621  methyl-accepting chemotaxis protein  34.55 
 
 
513 aa  282  9e-75  Colwellia psychrerythraea 34H  Bacteria  normal  0.113175  n/a   
 
 
-
 
NC_007298  Daro_1363  PAS  34.31 
 
 
544 aa  277  3e-73  Dechloromonas aromatica RCB  Bacteria  normal  hitchhiker  0.000284571 
 
 
-
 
NC_007298  Daro_0674  PAS  34.85 
 
 
544 aa  276  6e-73  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A2405  methyl-accepting chemotaxis sensory transducer, Pas/Pac sensor  35.11 
 
 
514 aa  275  1.0000000000000001e-72  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.0000957151  normal  0.313744 
 
 
-
 
NC_007947  Mfla_1933  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  33.4 
 
 
598 aa  275  2.0000000000000002e-72  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0618  methyl-accepting chemotaxis protein  35.57 
 
 
583 aa  272  1e-71  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_5286  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.23 
 
 
519 aa  270  4e-71  Delftia acidovorans SPH-1  Bacteria  normal  0.982796  normal 
 
 
-
 
NC_006348  BMA0264  methyl-accepting chemotaxis protein  35.41 
 
 
580 aa  270  5.9999999999999995e-71  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2473  methyl-accepting chemotaxis protein  35.41 
 
 
580 aa  270  5.9999999999999995e-71  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2685  methyl-accepting chemotaxis protein  35.41 
 
 
580 aa  270  5.9999999999999995e-71  Burkholderia mallei SAVP1  Bacteria  normal  0.394636  n/a   
 
 
-
 
NC_008836  BMA10229_A2390  methyl-accepting chemotaxis protein  35.41 
 
 
580 aa  270  5.9999999999999995e-71  Burkholderia mallei NCTC 10229  Bacteria  normal  0.790589  n/a   
 
 
-
 
NC_010524  Lcho_1294  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.4 
 
 
575 aa  269  8e-71  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00873235 
 
 
-
 
NC_009076  BURPS1106A_0760  aerotaxis sensor receptor  35.22 
 
 
583 aa  268  1e-70  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0927  methyl-accepting chemotaxis protein  35.22 
 
 
623 aa  268  2e-70  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_3362  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.98 
 
 
514 aa  267  2.9999999999999995e-70  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.234118 
 
 
-
 
NC_009074  BURPS668_0749  aerotaxis sensor receptor  35.22 
 
 
669 aa  266  5e-70  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B0267  methyl-accepting chemotaxis sensory transducer  34.85 
 
 
514 aa  266  8e-70  Burkholderia sp. 383  Bacteria  normal  normal  0.715012 
 
 
-
 
NC_008543  Bcen2424_5364  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.61 
 
 
514 aa  266  8e-70  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_2648  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.85 
 
 
520 aa  266  8e-70  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RSp1224  aerotaxis sensor receptor transmembrane protein  35.9 
 
 
514 aa  265  2e-69  Ralstonia solanacearum GMI1000  Bacteria  normal  0.229455  normal  0.54431 
 
 
-
 
NC_008391  Bamb_4714  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.39 
 
 
535 aa  265  2e-69  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_3682  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  35.25 
 
 
552 aa  264  3e-69  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.0302709 
 
 
-
 
NC_007404  Tbd_1618  chemotaxis sensory transducer  32.12 
 
 
557 aa  263  4e-69  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.126465 
 
 
-
 
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