More than 300 homologs were found in PanDaTox collection
for query gene PP_0597 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_0597  methylmalonate-semialdehyde dehydrogenase  100 
 
 
497 aa  1023    Pseudomonas putida KT2440  Bacteria  normal  0.0807275  normal 
 
 
-
 
NC_010515  Bcenmc03_3203  methylmalonate-semialdehyde dehydrogenase  66.26 
 
 
505 aa  685    Burkholderia cenocepacia MC0-3  Bacteria  normal  0.525066  normal 
 
 
-
 
NC_009832  Spro_0606  methylmalonate-semialdehyde dehydrogenase  65.59 
 
 
502 aa  686    Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_1113  methylmalonate-semialdehyde dehydrogenase  60.56 
 
 
496 aa  640    Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.0000656277  normal 
 
 
-
 
NC_003910  CPS_0098  methylmalonate-semialdehyde dehydrogenase  69.03 
 
 
498 aa  724    Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1432  methylmalonate-semialdehyde dehydrogenase  70.22 
 
 
498 aa  744    Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4060  methylmalonate-semialdehyde dehydrogenase  69.76 
 
 
496 aa  727    Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_4566  methylmalonate-semialdehyde dehydrogenase  99.6 
 
 
497 aa  1019    Pseudomonas putida W619  Bacteria  hitchhiker  0.000000243063  hitchhiker  0.00796429 
 
 
-
 
NC_008782  Ajs_4104  methylmalonate-semialdehyde dehydrogenase [acylating]  72.93 
 
 
505 aa  743    Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_0775  methylmalonate-semialdehyde dehydrogenase  88.13 
 
 
497 aa  920    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  hitchhiker  0.00425927  n/a   
 
 
-
 
NC_011138  MADE_00766  methylmalonate-semialdehyde dehydrogenase  66.13 
 
 
496 aa  707    Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_13890  methylmalonate-semialdehyde dehydrogenase  68.21 
 
 
498 aa  694    Azotobacter vinelandii DJ  Bacteria  normal  0.0371215  n/a   
 
 
-
 
NC_009665  Shew185_1151  methylmalonate-semialdehyde dehydrogenase  60.76 
 
 
496 aa  638    Shewanella baltica OS185  Bacteria  normal  0.11811  n/a   
 
 
-
 
NC_008700  Sama_2650  methylmalonate-semialdehyde dehydrogenase  61.37 
 
 
496 aa  644    Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.000962307  normal 
 
 
-
 
NC_009901  Spea_0935  methylmalonate-semialdehyde dehydrogenase  59.68 
 
 
501 aa  635    Shewanella pealeana ATCC 700345  Bacteria  normal  0.0357372  n/a   
 
 
-
 
NC_009439  Pmen_3694  methylmalonate-semialdehyde dehydrogenase [acylating]  85.89 
 
 
498 aa  893    Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_1083  methylmalonate-semialdehyde dehydrogenase  60.56 
 
 
496 aa  634    Shewanella putrefaciens CN-32  Bacteria  decreased coverage  0.0000148294  n/a   
 
 
-
 
NC_006349  BMAA1379  methylmalonate-semialdehyde dehydrogenase  66.19 
 
 
552 aa  672    Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0679  methylmalonate-semialdehyde dehydrogenase  88.93 
 
 
497 aa  926    Pseudomonas syringae pv. syringae B728a  Bacteria  hitchhiker  0.000513111  normal 
 
 
-
 
NC_009654  Mmwyl1_3349  methylmalonate-semialdehyde dehydrogenase  68.81 
 
 
498 aa  693    Marinomonas sp. MWYL1  Bacteria  normal  normal  0.894288 
 
 
-
 
NC_010552  BamMC406_4204  methylmalonate-semialdehyde dehydrogenase  65.86 
 
 
505 aa  680    Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.174243 
 
 
-
 
NC_008752  Aave_4746  methylmalonate-semialdehyde dehydrogenase [acylating]  71.92 
 
 
505 aa  743    Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_4044  methylmalonate-semialdehyde dehydrogenase  65.79 
 
 
498 aa  716    Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009078  BURPS1106A_A1010  methylmalonate-semialdehyde dehydrogenase  65.45 
 
 
560 aa  668    Burkholderia pseudomallei 1106a  Bacteria  normal  0.291559  n/a   
 
 
-
 
NC_010581  Bind_0175  methylmalonate-semialdehyde dehydrogenase  62.7 
 
 
509 aa  636    Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.262954  normal 
 
 
-
 
NC_007435  BURPS1710b_A2319  methylmalonate-semialdehyde dehydrogenase  65.45 
 
 
560 aa  679    Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0686  methylmalonate-semialdehyde dehydrogenase  91.15 
 
 
497 aa  946    Pseudomonas fluorescens Pf0-1  Bacteria  decreased coverage  0.000000335425  normal 
 
 
-
 
NC_008786  Veis_4438  methylmalonate-semialdehyde dehydrogenase  69.64 
 
 
518 aa  699    Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.68099  normal  0.139719 
 
 
-
 
NC_009656  PSPA7_0206  methylmalonate-semialdehyde dehydrogenase  89.13 
 
 
497 aa  930    Pseudomonas aeruginosa PA7  Bacteria  normal  0.515725  n/a   
 
 
-
 
NC_007511  Bcep18194_B1697  methylmalonate-semialdehyde dehydrogenase [acylating]  66.06 
 
 
505 aa  682    Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009075  BURPS668_A1097  methylmalonate-semialdehyde dehydrogenase  65.86 
 
 
531 aa  672    Burkholderia pseudomallei 668  Bacteria  normal  0.856592  n/a   
 
 
-
 
NC_009831  Ssed_1043  methylmalonate-semialdehyde dehydrogenase  60.56 
 
 
496 aa  641    Shewanella sediminis HAW-EB3  Bacteria  normal  0.0205992  normal  0.342071 
 
 
-
 
NC_007643  Rru_A1542  methylmalonate-semialdehyde dehydrogenase [acylating]  66.06 
 
 
499 aa  677    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0780531  n/a   
 
 
-
 
NC_007650  BTH_II1657  methylmalonate-semialdehyde dehydrogenase  66.26 
 
 
505 aa  674    Burkholderia thailandensis E264  Bacteria  normal  0.908997  n/a   
 
 
-
 
NC_011992  Dtpsy_3456  methylmalonate-semialdehyde dehydrogenase  72.73 
 
 
505 aa  741    Acidovorax ebreus TPSY  Bacteria  normal  0.146595  n/a   
 
 
-
 
NC_010322  PputGB1_0642  methylmalonate-semialdehyde dehydrogenase  99.4 
 
 
497 aa  1018    Pseudomonas putida GB-1  Bacteria  hitchhiker  0.00000000457228  decreased coverage  0.0000167809 
 
 
-
 
NC_009654  Mmwyl1_3662  methylmalonate-semialdehyde dehydrogenase  67.74 
 
 
496 aa  723    Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0372  methylmalonate-semialdehyde dehydrogenase  68.35 
 
 
501 aa  721    Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4593  methylmalonate-semialdehyde dehydrogenase  69.01 
 
 
498 aa  709    Pseudomonas mendocina ymp  Bacteria  normal  0.314497  normal 
 
 
-
 
NC_007963  Csal_1126  methylmalonate-semialdehyde dehydrogenase [acylating]  67.94 
 
 
496 aa  707    Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2380  methylmalonate-semialdehyde dehydrogenase [acylating]  70.77 
 
 
495 aa  739    Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3204  methylmalonate-semialdehyde dehydrogenase  60.56 
 
 
496 aa  637    Shewanella baltica OS223  Bacteria  normal  0.887195  normal 
 
 
-
 
NC_009512  Pput_0637  methylmalonate-semialdehyde dehydrogenase  100 
 
 
497 aa  1023    Pseudomonas putida F1  Bacteria  hitchhiker  0.000000149078  normal  0.27415 
 
 
-
 
NC_008061  Bcen_4052  methylmalonate-semialdehyde dehydrogenase  66.06 
 
 
523 aa  679    Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_0493  methylmalonate-semialdehyde dehydrogenase  66.19 
 
 
560 aa  672    Burkholderia mallei SAVP1  Bacteria  normal  0.0676107  n/a   
 
 
-
 
NC_009052  Sbal_1091  methylmalonate-semialdehyde dehydrogenase  60.56 
 
 
496 aa  639    Shewanella baltica OS155  Bacteria  decreased coverage  0.00014498  n/a   
 
 
-
 
NC_008391  Bamb_3730  methylmalonate-semialdehyde dehydrogenase  65.86 
 
 
505 aa  681    Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4293  methylmalonate-semialdehyde dehydrogenase  66.06 
 
 
505 aa  687    Burkholderia multivorans ATCC 17616  Bacteria  normal  0.74921  normal  0.50186 
 
 
-
 
NC_008463  PA14_01600  putative aldehyde dehydrogenase  88.53 
 
 
497 aa  926    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.510904  normal  0.728588 
 
 
-
 
NC_009439  Pmen_0414  methylmalonate-semialdehyde dehydrogenase [acylating]  66 
 
 
498 aa  696    Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008835  BMA10229_0157  methylmalonate-semialdehyde dehydrogenase  66.19 
 
 
552 aa  672    Burkholderia mallei NCTC 10229  Bacteria  normal  0.918228  n/a   
 
 
-
 
NC_008543  Bcen2424_4314  methylmalonate-semialdehyde dehydrogenase  66.06 
 
 
505 aa  679    Burkholderia cenocepacia HI2424  Bacteria  normal  0.389944  normal 
 
 
-
 
NC_009997  Sbal195_1185  methylmalonate-semialdehyde dehydrogenase  60.36 
 
 
496 aa  637    Shewanella baltica OS195  Bacteria  normal  0.773308  normal 
 
 
-
 
NC_009079  BMA10247_A1453  methylmalonate-semialdehyde dehydrogenase  66.19 
 
 
531 aa  671    Burkholderia mallei NCTC 10247  Bacteria  normal  0.454102  n/a   
 
 
-
 
NC_009092  Shew_0965  methylmalonate-semialdehyde dehydrogenase  60.36 
 
 
496 aa  631  1e-180  Shewanella loihica PV-4  Bacteria  normal  0.0738299  normal 
 
 
-
 
NC_008345  Sfri_3023  methylmalonate-semialdehyde dehydrogenase  58.92 
 
 
499 aa  632  1e-180  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0588426  n/a   
 
 
-
 
NC_009484  Acry_1791  methylmalonate-semialdehyde dehydrogenase  61.82 
 
 
508 aa  630  1e-179  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_2977  methylmalonate-semialdehyde dehydrogenase  60.69 
 
 
508 aa  625  1e-178  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_3010  methylmalonate-semialdehyde dehydrogenase [acylating]  60.56 
 
 
496 aa  626  1e-178  Shewanella sp. MR-7  Bacteria  normal  0.10059  normal 
 
 
-
 
NC_008577  Shewana3_3107  methylmalonate-semialdehyde dehydrogenase [acylating]  60.56 
 
 
496 aa  626  1e-178  Shewanella sp. ANA-3  Bacteria  normal  0.281488  normal 
 
 
-
 
NC_010159  YpAngola_A1877  methylmalonate-semialdehyde dehydrogenase  60.9 
 
 
508 aa  625  1e-178  Yersinia pestis Angola  Bacteria  normal  hitchhiker  0.00719864 
 
 
-
 
NC_010678  Rpic_4274  methylmalonate-semialdehyde dehydrogenase  62.3 
 
 
507 aa  622  1e-177  Ralstonia pickettii 12J  Bacteria  normal  0.463031  normal  0.914985 
 
 
-
 
NC_010465  YPK_3049  methylmalonate-semialdehyde dehydrogenase  60.49 
 
 
508 aa  624  1e-177  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_012857  Rpic12D_4384  methylmalonate-semialdehyde dehydrogenase  62.3 
 
 
507 aa  622  1e-177  Ralstonia pickettii 12D  Bacteria  normal  normal  0.640119 
 
 
-
 
NC_008321  Shewmr4_2928  methylmalonate-semialdehyde dehydrogenase [acylating]  60.36 
 
 
496 aa  623  1e-177  Shewanella sp. MR-4  Bacteria  normal  0.0250419  normal 
 
 
-
 
NC_010511  M446_1138  methylmalonate-semialdehyde dehydrogenase  63.05 
 
 
499 aa  622  1e-177  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I3333  methylmalonate-semialdehyde dehydrogenase  62.27 
 
 
508 aa  615  1e-175  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3917  methylmalonate-semialdehyde dehydrogenase  62.96 
 
 
512 aa  616  1e-175  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A0015  acylating methylmalonate-semialdehyde dehydrogenase  62.3 
 
 
512 aa  617  1e-175  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_4215  methylmalonate-semialdehyde dehydrogenase  61.82 
 
 
499 aa  614  9.999999999999999e-175  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_2399  methylmalonate-semialdehyde dehydrogenase  58.37 
 
 
502 aa  614  9.999999999999999e-175  Psychromonas ingrahamii 37  Bacteria  normal  0.169024  normal  0.676059 
 
 
-
 
NC_011365  Gdia_2416  methylmalonate-semialdehyde dehydrogenase  58.84 
 
 
497 aa  613  9.999999999999999e-175  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1444  methylmalonate-semialdehyde dehydrogenase  61.82 
 
 
499 aa  611  9.999999999999999e-175  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0424754  normal 
 
 
-
 
NC_006348  BMA2931  methylmalonate-semialdehyde dehydrogenase  62.47 
 
 
508 aa  608  1e-173  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3343  methylmalonate-semialdehyde dehydrogenase  59.36 
 
 
503 aa  611  1e-173  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_1282  methylmalonate-semialdehyde dehydrogenase  61.62 
 
 
499 aa  608  1e-173  Methylobacterium extorquens PA1  Bacteria  normal  0.24316  normal 
 
 
-
 
NC_007434  BURPS1710b_0202  methylmalonate-semialdehyde dehydrogenase  62.47 
 
 
508 aa  608  1e-173  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3379  methylmalonate-semialdehyde dehydrogenase  62.47 
 
 
540 aa  608  1e-173  Burkholderia mallei SAVP1  Bacteria  normal  0.25753  n/a   
 
 
-
 
NC_010676  Bphyt_5814  methylmalonate-semialdehyde dehydrogenase  63.39 
 
 
507 aa  610  1e-173  Burkholderia phytofirmans PsJN  Bacteria  normal  0.404491  normal  0.463976 
 
 
-
 
NC_009076  BURPS1106A_4070  methylmalonate-semialdehyde dehydrogenase  62.47 
 
 
508 aa  608  1e-173  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1611  methylmalonate-semialdehyde dehydrogenase  62.47 
 
 
508 aa  608  1e-173  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B2023  acylating methylmalonate-semialdehyde dehydrogenase  63.39 
 
 
507 aa  610  1e-173  Burkholderia xenovorans LB400  Bacteria  normal  0.794475  normal  0.0299094 
 
 
-
 
NC_009654  Mmwyl1_1597  methylmalonate-semialdehyde dehydrogenase  58.42 
 
 
506 aa  608  1e-173  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009080  BMA10247_2990  methylmalonate-semialdehyde dehydrogenase  62.47 
 
 
540 aa  608  1e-173  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_0980  methylmalonate-semialdehyde dehydrogenase  60.32 
 
 
512 aa  608  1e-173  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_1035  methylmalonate-semialdehyde dehydrogenase  57.69 
 
 
506 aa  609  1e-173  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_3801  methylmalonate-semialdehyde dehydrogenase  59.24 
 
 
511 aa  606  9.999999999999999e-173  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.228893  normal  0.75946 
 
 
-
 
NC_007347  Reut_A0249  methylmalonate-semialdehyde dehydrogenase [acylating]  61.46 
 
 
505 aa  606  9.999999999999999e-173  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5828  methylmalonate-semialdehyde dehydrogenase [acylating]  59.51 
 
 
535 aa  607  9.999999999999999e-173  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_0206  methylmalonate-semialdehyde dehydrogenase  61.66 
 
 
505 aa  607  9.999999999999999e-173  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_009074  BURPS668_3996  methylmalonate-semialdehyde dehydrogenase  62.47 
 
 
508 aa  607  9.999999999999999e-173  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_5681  methylmalonate-semialdehyde dehydrogenase  60.73 
 
 
503 aa  607  9.999999999999999e-173  Burkholderia phymatum STM815  Bacteria  normal  normal  0.320797 
 
 
-
 
NC_011894  Mnod_2521  methylmalonate-semialdehyde dehydrogenase  60.16 
 
 
499 aa  605  9.999999999999999e-173  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RS02392  transmembrane aldehyde dehydrogenase oxidoreductase protein  61.29 
 
 
499 aa  604  1.0000000000000001e-171  Ralstonia solanacearum GMI1000  Bacteria  normal  0.697821  normal 
 
 
-
 
NC_013422  Hneap_2368  methylmalonate-semialdehyde dehydrogenase  59.84 
 
 
504 aa  602  1.0000000000000001e-171  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_2475  methylmalonate-semialdehyde dehydrogenase  57.43 
 
 
498 aa  602  1.0000000000000001e-171  Methylobacterium sp. 4-46  Bacteria  normal  0.55823  normal  0.220752 
 
 
-
 
NC_011004  Rpal_3940  methylmalonate-semialdehyde dehydrogenase  57.03 
 
 
498 aa  601  1.0000000000000001e-171  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.90589  n/a   
 
 
-
 
NC_009719  Plav_1446  methylmalonate-semialdehyde dehydrogenase  56.05 
 
 
507 aa  603  1.0000000000000001e-171  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.494247  normal 
 
 
-
 
NC_010551  BamMC406_1351  methylmalonate-semialdehyde dehydrogenase  58.5 
 
 
506 aa  599  1e-170  Burkholderia ambifaria MC40-6  Bacteria  normal  0.241244  normal 
 
 
-
 
NC_008825  Mpe_A3524  methylmalonate-semialdehyde dehydrogenase [acylating]  60.61 
 
 
506 aa  598  1e-170  Methylibium petroleiphilum PM1  Bacteria  normal  0.132108  normal  0.367269 
 
 
-
 
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