More than 300 homologs were found in PanDaTox collection
for query gene PP_0320 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_0320  methyl-accepting chemotaxis sensory transducer  100 
 
 
645 aa  1292    Pseudomonas putida KT2440  Bacteria  normal  decreased coverage  0.0000409011 
 
 
-
 
NC_007492  Pfl01_0450  chemotaxis sensory transducer  71.94 
 
 
645 aa  915    Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_0734  methyl-accepting chemotaxis sensory transducer  64.34 
 
 
643 aa  767    Pseudomonas mendocina ymp  Bacteria  normal  0.770301  normal 
 
 
-
 
NC_010322  PputGB1_0343  methyl-accepting chemotaxis sensory transducer  96.43 
 
 
645 aa  1220    Pseudomonas putida GB-1  Bacteria  normal  0.675969  normal 
 
 
-
 
NC_010501  PputW619_4887  methyl-accepting chemotaxis sensory transducer  92.56 
 
 
645 aa  1155    Pseudomonas putida W619  Bacteria  normal  normal  0.658451 
 
 
-
 
NC_009512  Pput_0342  methyl-accepting chemotaxis sensory transducer  99.69 
 
 
645 aa  1289    Pseudomonas putida F1  Bacteria  normal  0.860801  normal 
 
 
-
 
NC_009831  Ssed_3856  methyl-accepting chemotaxis sensory transducer  34.42 
 
 
640 aa  397  1e-109  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.825575 
 
 
-
 
NC_009092  Shew_0596  methyl-accepting chemotaxis sensory transducer  36.18 
 
 
640 aa  386  1e-106  Shewanella loihica PV-4  Bacteria  normal  normal  0.270432 
 
 
-
 
NC_003910  CPS_1439  methyl-accepting chemotaxis protein  36.39 
 
 
641 aa  380  1e-104  Colwellia psychrerythraea 34H  Bacteria  normal  0.336763  n/a   
 
 
-
 
NC_009092  Shew_0085  methyl-accepting chemotaxis sensory transducer  35.08 
 
 
638 aa  367  1e-100  Shewanella loihica PV-4  Bacteria  normal  0.0647334  normal 
 
 
-
 
NC_010506  Swoo_4795  methyl-accepting chemotaxis sensory transducer  37.78 
 
 
638 aa  359  9.999999999999999e-98  Shewanella woodyi ATCC 51908  Bacteria  normal  0.884167  hitchhiker  0.000462611 
 
 
-
 
NC_009831  Ssed_4404  methyl-accepting chemotaxis sensory transducer  36.06 
 
 
638 aa  352  1e-95  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0156105 
 
 
-
 
NC_009052  Sbal_0282  methyl-accepting chemotaxis sensory transducer  38.87 
 
 
641 aa  351  2e-95  Shewanella baltica OS155  Bacteria  normal  0.0149105  n/a   
 
 
-
 
NC_009997  Sbal195_0283  methyl-accepting chemotaxis sensory transducer  38.87 
 
 
638 aa  351  3e-95  Shewanella baltica OS195  Bacteria  normal  0.411591  normal 
 
 
-
 
NC_009665  Shew185_0275  methyl-accepting chemotaxis sensory transducer  38.87 
 
 
638 aa  351  3e-95  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0279  methyl-accepting chemotaxis sensory transducer  38.87 
 
 
638 aa  350  4e-95  Shewanella baltica OS223  Bacteria  normal  0.983838  normal 
 
 
-
 
NC_008345  Sfri_0080  methyl-accepting chemotaxis sensory transducer  34.22 
 
 
636 aa  348  2e-94  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_4454  methyl-accepting chemotaxis protein  38.54 
 
 
642 aa  347  5e-94  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008322  Shewmr7_3750  methyl-accepting chemotaxis sensory transducer  38.47 
 
 
638 aa  345  2e-93  Shewanella sp. MR-7  Bacteria  normal  0.666265  normal  0.186245 
 
 
-
 
NC_008321  Shewmr4_0271  methyl-accepting chemotaxis sensory transducer  37.91 
 
 
638 aa  344  2.9999999999999997e-93  Shewanella sp. MR-4  Bacteria  normal  0.758035  hitchhiker  0.0000678809 
 
 
-
 
NC_008577  Shewana3_0272  methyl-accepting chemotaxis sensory transducer  38.03 
 
 
638 aa  343  4e-93  Shewanella sp. ANA-3  Bacteria  decreased coverage  0.00090491  hitchhiker  0.000000349734 
 
 
-
 
NC_007954  Sden_0099  chemotaxis sensory transducer  36.78 
 
 
639 aa  343  5e-93  Shewanella denitrificans OS217  Bacteria  unclonable  0.0000000152719  n/a   
 
 
-
 
NC_009438  Sputcn32_0387  methyl-accepting chemotaxis sensory transducer  37.87 
 
 
638 aa  339  7e-92  Shewanella putrefaciens CN-32  Bacteria  normal  0.408395  n/a   
 
 
-
 
NC_009456  VC0395_1102  methyl-accepting chemotaxis protein  34.51 
 
 
638 aa  339  9e-92  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001273  methyl-accepting chemotaxis protein  34.1 
 
 
638 aa  333  7.000000000000001e-90  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_3522  putative methyl-accepting chemotaxis sensory transducer  35.64 
 
 
636 aa  317  5e-85  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_05150  adenylyl cyclase class-3/4/guanylyl cyclase  33.33 
 
 
650 aa  315  9.999999999999999e-85  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011138  MADE_00464  methyl-accepting chemotaxis protein  33.44 
 
 
636 aa  313  7.999999999999999e-84  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C1067  methyl-accepting chemotaxis sensory transducer  35.44 
 
 
634 aa  312  1e-83  Burkholderia xenovorans LB400  Bacteria  normal  0.318926  normal 
 
 
-
 
NC_007954  Sden_2239  chemotaxis sensory transducer  31.66 
 
 
648 aa  307  4.0000000000000004e-82  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_0552  putative methyl-accepting chemotaxis sensory transducer  30.75 
 
 
648 aa  287  4e-76  Shewanella amazonensis SB2B  Bacteria  normal  0.283806  decreased coverage  0.00439756 
 
 
-
 
NC_008061  Bcen_4628  methyl-accepting chemotaxis sensory transducer  31.8 
 
 
620 aa  282  1e-74  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_3736  methyl-accepting chemotaxis sensory transducer  32.37 
 
 
620 aa  282  2e-74  Burkholderia cenocepacia HI2424  Bacteria  normal  0.455432  normal  0.0212994 
 
 
-
 
NC_010515  Bcenmc03_3785  methyl-accepting chemotaxis sensory transducer  31.23 
 
 
620 aa  280  7e-74  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.0060774  normal  0.0147123 
 
 
-
 
NC_008228  Patl_0604  methyl-accepting chemotaxis sensory transducer  30.52 
 
 
641 aa  278  2e-73  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.471742  n/a   
 
 
-
 
NC_009656  PSPA7_4877  chemotactic transducer PctB  32.44 
 
 
629 aa  278  2e-73  Pseudomonas aeruginosa PA7  Bacteria  normal  0.164155  n/a   
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  40 
 
 
712 aa  276  9e-73  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_007511  Bcep18194_B2357  methyl-accepting chemotaxis sensory transducer  32.69 
 
 
620 aa  276  1.0000000000000001e-72  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_56010  chemotactic transducer PctB  32.28 
 
 
629 aa  276  1.0000000000000001e-72  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4431  chemotaxis sensory transducer, Cache sensor  34.04 
 
 
629 aa  275  2.0000000000000002e-72  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  40.1 
 
 
712 aa  275  2.0000000000000002e-72  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_009656  PSPA7_4874  chemotactic transducer PctC  33.64 
 
 
632 aa  271  2.9999999999999997e-71  Pseudomonas aeruginosa PA7  Bacteria  normal  0.153332  n/a   
 
 
-
 
NC_007492  Pfl01_0354  chemotaxis sensory transducer, Cache sensor  35.52 
 
 
630 aa  270  5.9999999999999995e-71  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_55960  chemotactic transducer PctC  32.71 
 
 
632 aa  269  1e-70  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.289325  normal 
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  42.07 
 
 
637 aa  268  2e-70  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_009784  VIBHAR_06314  histidine kinase  33.4 
 
 
623 aa  267  4e-70  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009439  Pmen_3309  methyl-accepting chemotaxis sensory transducer  32.45 
 
 
625 aa  266  1e-69  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.776822 
 
 
-
 
NC_009656  PSPA7_4876  chemotactic transducer PctA  33.28 
 
 
629 aa  264  4e-69  Pseudomonas aeruginosa PA7  Bacteria  normal  0.647167  n/a   
 
 
-
 
NC_004578  PSPTO_2448  methyl-accepting chemotaxis protein  31.2 
 
 
646 aa  263  8e-69  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.718596  n/a   
 
 
-
 
NC_004578  PSPTO_2480  methyl-accepting chemotaxis protein  32.01 
 
 
629 aa  263  8e-69  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0124  chemotaxis sensory transducer, Cache sensor  31.33 
 
 
626 aa  262  1e-68  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.201174  normal 
 
 
-
 
NC_008789  Hhal_0443  methyl-accepting chemotaxis sensory transducer  45.35 
 
 
541 aa  262  1e-68  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2246  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  32.33 
 
 
629 aa  261  3e-68  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.265681  normal  0.412954 
 
 
-
 
NC_010501  PputW619_1723  methyl-accepting chemotaxis sensory transducer with Cache sensor  32.41 
 
 
626 aa  261  3e-68  Pseudomonas putida W619  Bacteria  normal  0.372844  normal 
 
 
-
 
NC_008391  Bamb_5471  methyl-accepting chemotaxis sensory transducer  30.92 
 
 
620 aa  261  3e-68  Burkholderia ambifaria AMMD  Bacteria  normal  0.407039  normal 
 
 
-
 
NC_009439  Pmen_2154  methyl-accepting chemotaxis sensory transducer  32.91 
 
 
627 aa  261  4e-68  Pseudomonas mendocina ymp  Bacteria  normal  0.0789614  normal  0.507372 
 
 
-
 
NC_007005  Psyr_2220  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  30.89 
 
 
646 aa  260  4e-68  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.071358  normal  0.520396 
 
 
-
 
NC_008463  PA14_56000  chemotactic transducer PctA  32.97 
 
 
629 aa  260  5.0000000000000005e-68  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0512673  normal 
 
 
-
 
NC_009654  Mmwyl1_4029  methyl-accepting chemotaxis sensory transducer  29.19 
 
 
630 aa  260  6e-68  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4997  methyl-accepting chemotaxis sensory transducer  31.09 
 
 
620 aa  259  1e-67  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.245568 
 
 
-
 
NC_009512  Pput_0623  methyl-accepting chemotaxis sensory transducer  32.08 
 
 
647 aa  258  2e-67  Pseudomonas putida F1  Bacteria  normal  0.494937  normal 
 
 
-
 
NC_011313  VSAL_II1022  methyl-accepting chemotaxis protein  30.4 
 
 
628 aa  258  2e-67  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.771007  n/a   
 
 
-
 
NC_007492  Pfl01_0657  chemotaxis sensory transducer, Cache sensor  30.03 
 
 
648 aa  258  2e-67  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.511779  normal 
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  39.4 
 
 
713 aa  259  2e-67  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_007974  Rmet_3723  HAMP domain-containing protein  29.69 
 
 
628 aa  258  2e-67  Cupriavidus metallidurans CH34  Bacteria  normal  0.21159  normal  0.539738 
 
 
-
 
NC_010501  PputW619_0425  methyl-accepting chemotaxis sensory transducer with Cache sensor  34.17 
 
 
630 aa  258  3e-67  Pseudomonas putida W619  Bacteria  normal  0.461628  normal 
 
 
-
 
NC_013457  VEA_001073  N-acetylglucosamine regulated methyl-accepting chemotaxis protein  31.15 
 
 
628 aa  258  4e-67  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_0584  methyl-accepting chemotaxis transducer  31.74 
 
 
647 aa  256  6e-67  Pseudomonas putida KT2440  Bacteria  normal  0.77697  normal  0.644217 
 
 
-
 
NC_009439  Pmen_3669  methyl-accepting chemotaxis sensory transducer  40.1 
 
 
716 aa  256  7e-67  Pseudomonas mendocina ymp  Bacteria  normal  0.170337  normal 
 
 
-
 
NC_009512  Pput_1257  methyl-accepting chemotaxis sensory transducer  38.14 
 
 
688 aa  256  7e-67  Pseudomonas putida F1  Bacteria  normal  0.124474  normal 
 
 
-
 
NC_010552  BamMC406_3618  methyl-accepting chemotaxis sensory transducer  31.08 
 
 
620 aa  256  9e-67  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0344374  normal 
 
 
-
 
NC_013456  VEA_003896  methyl-accepting chemotaxis protein  40.29 
 
 
545 aa  255  2.0000000000000002e-66  Vibrio sp. Ex25  Bacteria  decreased coverage  0.000288698  n/a   
 
 
-
 
NC_002947  PP_1228  methyl-accepting chemotaxis transducer  36.7 
 
 
688 aa  254  5.000000000000001e-66  Pseudomonas putida KT2440  Bacteria  normal  normal  0.739741 
 
 
-
 
NC_013457  VEA_001423  methyl-accepting chemotaxis protein  33.33 
 
 
623 aa  253  6e-66  Vibrio sp. Ex25  Bacteria  normal  0.896179  n/a   
 
 
-
 
NC_010322  PputGB1_0629  methyl-accepting chemotaxis sensory transducer with Cache sensor  30.48 
 
 
647 aa  252  1e-65  Pseudomonas putida GB-1  Bacteria  normal  0.624074  hitchhiker  0.000681907 
 
 
-
 
NC_010501  PputW619_1011  methyl-accepting chemotaxis sensory transducer with Cache sensor  32.19 
 
 
624 aa  253  1e-65  Pseudomonas putida W619  Bacteria  normal  0.752503  hitchhiker  0.0000000000251926 
 
 
-
 
NC_010322  PputGB1_1880  methyl-accepting chemotaxis sensory transducer with Cache sensor  32.67 
 
 
628 aa  250  7e-65  Pseudomonas putida GB-1  Bacteria  normal  0.454316  normal 
 
 
-
 
NC_010322  PputGB1_4190  methyl-accepting chemotaxis sensory transducer  37.38 
 
 
688 aa  250  7e-65  Pseudomonas putida GB-1  Bacteria  normal  0.251316  normal 
 
 
-
 
NC_009783  VIBHAR_01753  hypothetical protein  40.53 
 
 
545 aa  249  8e-65  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010501  PputW619_3984  methyl-accepting chemotaxis sensory transducer  35.1 
 
 
688 aa  249  9e-65  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4580  methyl-accepting chemotaxis sensory transducer  36.54 
 
 
648 aa  248  3e-64  Pseudomonas putida W619  Bacteria  normal  normal  0.0108713 
 
 
-
 
NC_009512  Pput_3489  methyl-accepting chemotaxis sensory transducer  32.67 
 
 
628 aa  247  4e-64  Pseudomonas putida F1  Bacteria  normal  0.228387  normal 
 
 
-
 
NC_008577  Shewana3_3950  methyl-accepting chemotaxis sensory transducer  33.1 
 
 
623 aa  247  4e-64  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_04784  histidine kinase  30.05 
 
 
628 aa  247  4e-64  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010322  PputGB1_4443  methyl-accepting chemotaxis sensory transducer with Cache sensor  32.5 
 
 
624 aa  247  4.9999999999999997e-64  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.0000033578 
 
 
-
 
NC_008345  Sfri_0581  methyl-accepting chemotaxis sensory transducer  34.46 
 
 
554 aa  247  6e-64  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2249  methyl-accepting chemotaxis transducer  32.83 
 
 
643 aa  246  6.999999999999999e-64  Pseudomonas putida KT2440  Bacteria  normal  0.477129  normal  0.786945 
 
 
-
 
NC_002947  PP_1371  methyl-accepting chemotaxis transducer  32.5 
 
 
624 aa  246  8e-64  Pseudomonas putida KT2440  Bacteria  normal  normal  0.318672 
 
 
-
 
NC_011663  Sbal223_3405  methyl-accepting chemotaxis sensory transducer with Cache sensor  29.75 
 
 
630 aa  246  9.999999999999999e-64  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_3603  methyl-accepting chemotaxis sensory transducer  29.75 
 
 
630 aa  245  9.999999999999999e-64  Shewanella baltica OS195  Bacteria  normal  0.840663  normal 
 
 
-
 
NC_009052  Sbal_0882  methyl-accepting chemotaxis sensory transducer  29.75 
 
 
630 aa  245  1.9999999999999999e-63  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0949  methyl-accepting chemotaxis sensory transducer  45.18 
 
 
636 aa  245  1.9999999999999999e-63  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0451727 
 
 
-
 
NC_009665  Shew185_3480  methyl-accepting chemotaxis sensory transducer  29.75 
 
 
630 aa  245  1.9999999999999999e-63  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_0895  methyl-accepting chemotaxis sensory transducer  32.03 
 
 
630 aa  245  1.9999999999999999e-63  Shewanella sp. ANA-3  Bacteria  normal  normal  0.174985 
 
 
-
 
NC_004578  PSPTO_1061  methyl-accepting chemotaxis protein  31.17 
 
 
626 aa  244  3e-63  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.646209  n/a   
 
 
-
 
NC_008345  Sfri_1939  methyl-accepting chemotaxis sensory transducer  41.97 
 
 
638 aa  244  3.9999999999999997e-63  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.573171  n/a   
 
 
-
 
NC_007912  Sde_2316  putative methyl-accepting chemotaxis sensory transducer  38.57 
 
 
548 aa  244  5e-63  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0208981 
 
 
-
 
NC_008322  Shewmr7_3825  methyl-accepting chemotaxis sensory transducer  32.81 
 
 
623 aa  243  5e-63  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0316  methyl-accepting chemotaxis protein  36.38 
 
 
652 aa  243  6e-63  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_1586  methyl-accepting chemotaxis sensory transducer  32.52 
 
 
626 aa  243  6e-63  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
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