More than 300 homologs were found in PanDaTox collection
for query gene PC1_3648 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
CP001509  ECD_00036  carbamoyl-phosphate synthase small subunit  86.39 
 
 		 382 aa  692    Escherichia coli BL21(DE3)  Bacteria  normal  0.53844  n/a   
 
 
-
 
CP001637  EcDH1_3567  carbamoyl-phosphate synthase, small subunit  86.39 
 
 		 382 aa  692    Escherichia coli DH1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009801  EcE24377A_0033  carbamoyl phosphate synthase small subunit  86.39 
 
 		 382 aa  692    Escherichia coli E24377A  Bacteria  normal  1  n/a   
 
 
-
 
NC_009800  EcHS_A0035  carbamoyl phosphate synthase small subunit  86.39 
 
 		 382 aa  692    Escherichia coli HS  Bacteria  normal  1  n/a   
 
 
-
 
NC_010498  EcSMS35_0032  carbamoyl phosphate synthase small subunit  86.13 
 
 		 391 aa  692    Escherichia coli SMS-3-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011094  SeSA_A0074  carbamoyl phosphate synthase small subunit  85.86 
 
 		 382 aa  690    Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011083  SeHA_C0070  carbamoyl phosphate synthase small subunit  85.86 
 
 		 391 aa  690    Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012917  PC1_3648  carbamoyl phosphate synthase small subunit  100 
 
 		 382 aa  792    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.48497  n/a   
 
 
-
 
NC_013421  Pecwa_3841  carbamoyl phosphate synthase small subunit  98.17 
 
 		 382 aa  778    Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
-
 
NC_011149  SeAg_B0073  carbamoyl phosphate synthase small subunit  85.6 
 
 		 382 aa  687    Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  1  n/a   
 
 
-
 
NC_009436  Ent638_0591  carbamoyl phosphate synthase small subunit  87.17 
 
 		 382 aa  695    Enterobacter sp. 638  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012912  Dd1591_0554  carbamoyl-phosphate synthase, small subunit  91.58 
 
 		 381 aa  711    Dickeya zeae Ech1591  Bacteria  normal  1  n/a   
 
 
-
 
NC_012892  B21_00035  hypothetical protein  86.39 
 
 		 382 aa  692    Escherichia coli BL21  Bacteria  normal  0.457385  n/a   
 
 
-
 
NC_011205  SeD_A0072  carbamoyl phosphate synthase small subunit  86.13 
 
 		 382 aa  691    Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.399436  normal  0.955538 
 
 
-
 
NC_009708  YpsIP31758_3454  carbamoyl phosphate synthase small subunit  87.93 
 
 		 391 aa  685    Yersinia pseudotuberculosis IP 31758  Bacteria  normal  1  n/a   
 
 
-
 
NC_011353  ECH74115_0035  carbamoyl phosphate synthase small subunit  86.39 
 
 		 382 aa  692    Escherichia coli O157:H7 str. EC4115  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010465  YPK_3583  carbamoyl phosphate synthase small subunit  87.93 
 
 		 391 aa  684    Yersinia pseudotuberculosis YPIII  Bacteria  normal  1  n/a   
 
 
-
 
NC_009832  Spro_0713  carbamoyl phosphate synthase small subunit  89.53 
 
 		 382 aa  702    Serratia proteamaculans 568  Bacteria  normal  1  normal  0.123455 
 
 
-
 
NC_012880  Dd703_0592  carbamoyl-phosphate synthase, small subunit  90.05 
 
 		 382 aa  698    Dickeya dadantii Ech703  Bacteria  normal  1  n/a   
 
 
-
 
NC_009457  VC0395_A1968  carbamoyl phosphate synthase small subunit  80.21 
 
 		 379 aa  646    Vibrio cholerae O395  Bacteria  normal  0.837999  n/a   
 
 
-
 
NC_011312  VSAL_I0585  carbamoyl phosphate synthase small subunit  78.39 
 
 		 384 aa  636    Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0152244  n/a   
 
 
-
 
NC_010468  EcolC_3623  carbamoyl phosphate synthase small subunit  86.39 
 
 		 382 aa  691    Escherichia coli ATCC 8739  Bacteria  normal  1  normal  0.314254 
 
 
-
 
NC_011080  SNSL254_A0070  carbamoyl phosphate synthase small subunit  86.13 
 
 		 382 aa  691    Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010159  YpAngola_A0784  carbamoyl phosphate synthase small subunit  87.93 
 
 		 391 aa  686    Yersinia pestis Angola  Bacteria  normal  0.594963  normal  0.491126 
 
 
-
 
NC_010658  SbBS512_E0036  carbamoyl phosphate synthase small subunit  86.39 
 
 		 382 aa  692    Shigella boydii CDC 3083-94  Bacteria  normal  1  n/a   
 
 
-
 
NC_013456  VEA_004479  carbamoyl-phosphate synthase small chain  78.1 
 
 		 379 aa  632  1e-180  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_009783  VIBHAR_00912  carbamoyl phosphate synthase small subunit  77.23 
 
 		 416 aa  625  1e-178  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008700  Sama_2504  carbamoyl phosphate synthase small subunit  77.23 
 
 		 381 aa  613  9.999999999999999e-175  Shewanella amazonensis SB2B  Bacteria  normal  0.323519  normal  1 
 
 
-
 
NC_009831  Ssed_3404  carbamoyl phosphate synthase small subunit  76.7 
 
 		 385 aa  605  9.999999999999999e-173  Shewanella sediminis HAW-EB3  Bacteria  normal  1  hitchhiker  0.0000786314 
 
 
-
 
NC_008709  Ping_0896  carbamoyl-phosphate synthase, small subunit  75.53 
 
 		 378 aa  603  1.0000000000000001e-171  Psychromonas ingrahamii 37  Bacteria  normal  0.348294  normal  0.560722 
 
 
-
 
NC_010506  Swoo_3578  carbamoyl phosphate synthase small subunit  76.44 
 
 		 381 aa  603  1.0000000000000001e-171  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0674639  normal  0.11278 
 
 
-
 
NC_009092  Shew_2839  carbamoyl phosphate synthase small subunit  76.96 
 
 		 390 aa  600  1e-170  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00340084  normal  0.0286195 
 
 
-
 
NC_009901  Spea_3075  carbamoyl phosphate synthase small subunit  77.23 
 
 		 381 aa  600  1e-170  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0335125  n/a   
 
 
-
 
NC_003910  CPS_3459  carbamoyl phosphate synthase small subunit  73.7 
 
 		 383 aa  592  1e-168  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_009438  Sputcn32_2940  carbamoyl phosphate synthase small subunit  74.35 
 
 		 386 aa  593  1e-168  Shewanella putrefaciens CN-32  Bacteria  normal  0.185194  n/a   
 
 
-
 
NC_008228  Patl_2215  carbamoyl-phosphate synthase, small subunit  74.41 
 
 		 381 aa  593  1e-168  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000311671  n/a   
 
 
-
 
NC_004347  SO_1141  carbamoyl phosphate synthase small subunit  73.82 
 
 		 386 aa  590  1e-167  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_3526  carbamoyl phosphate synthase small subunit  74.87 
 
 		 386 aa  587  1e-166  Shewanella baltica OS195  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008345  Sfri_0975  carbamoyl phosphate synthase small subunit  75.13 
 
 		 381 aa  585  1e-166  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00141878  n/a   
 
 
-
 
NC_011663  Sbal223_1051  carbamoyl phosphate synthase small subunit  74.87 
 
 		 387 aa  583  1.0000000000000001e-165  Shewanella baltica OS223  Bacteria  normal  0.098868  hitchhiker  0.0000017806 
 
 
-
 
NC_009052  Sbal_3305  carbamoyl phosphate synthase small subunit  74.61 
 
 		 386 aa  582  1.0000000000000001e-165  Shewanella baltica OS155  Bacteria  normal  0.314757  n/a   
 
 
-
 
NC_011138  MADE_02244  carbamoyl-phosphate synthase small subunit  72.03 
 
 		 440 aa  580  1e-164  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0231375  n/a   
 
 
-
 
NC_009665  Shew185_3401  carbamoyl phosphate synthase small subunit  74.35 
 
 		 391 aa  580  1e-164  Shewanella baltica OS185  Bacteria  hitchhiker  0.00720177  n/a   
 
 
-
 
NC_008322  Shewmr7_1003  carbamoyl phosphate synthase small subunit  73.82 
 
 		 386 aa  578  1e-164  Shewanella sp. MR-7  Bacteria  normal  0.0354323  normal  1 
 
 
-
 
NC_008321  Shewmr4_0965  carbamoyl phosphate synthase small subunit  73.56 
 
 		 386 aa  577  1.0000000000000001e-163  Shewanella sp. MR-4  Bacteria  normal  0.0738044  normal  1 
 
 
-
 
NC_008463  PA14_62930  carbamoyl phosphate synthase small subunit  73.56 
 
 		 378 aa  577  1.0000000000000001e-163  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008577  Shewana3_0967  carbamoyl phosphate synthase small subunit  73.56 
 
 		 386 aa  577  1.0000000000000001e-163  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00370508  normal  1 
 
 
-
 
NC_007954  Sden_0995  carbamoyl phosphate synthase small subunit  72.77 
 
 		 381 aa  571  1.0000000000000001e-162  Shewanella denitrificans OS217  Bacteria  normal  0.055995  n/a   
 
 
-
 
NC_009656  PSPA7_5478  carbamoyl phosphate synthase small subunit  72.77 
 
 		 378 aa  570  1e-161  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_007984  BCI_0559  carbamoyl-phosphate synthase, small subunit  70.71 
 
 		 381 aa  565  1e-160  Baumannia cicadellinicola str. Hc (Homalodisca coagulata)  Bacteria  normal  1  n/a   
 
 
-
 
NC_011901  Tgr7_0975  carbamoyl-phosphate synthase, small subunit  71.24 
 
 		 379 aa  558  1e-158  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  1  n/a   
 
 
-
 
NC_007963  Csal_3086  carbamoyl-phosphate synthase small subunit  70.42 
 
 		 381 aa  558  1e-158  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0580438  n/a   
 
 
-
 
NC_012560  Avin_42940  carbamoyl phosphate synthase small subunit  70.67 
 
 		 378 aa  555  1e-157  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_007520  Tcr_0878  carbamoyl-phosphate synthase, small subunit  70.26 
 
 		 378 aa  555  1e-157  Thiomicrospira crunogena XCL-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_009439  Pmen_3621  carbamoyl phosphate synthase small subunit  70.74 
 
 		 382 aa  555  1e-157  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002947  PP_4724  carbamoyl phosphate synthase small subunit  70.11 
 
 		 378 aa  551  1e-156  Pseudomonas putida KT2440  Bacteria  normal  0.103863  hitchhiker  0.00276318 
 
 
-
 
NC_004578  PSPTO_4502  carbamoyl-phosphate synthase, small subunit  69.58 
 
 		 378 aa  551  1e-156  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.723109  n/a   
 
 
-
 
NC_007492  Pfl01_0766  carbamoyl phosphate synthase small subunit  70.63 
 
 		 386 aa  552  1e-156  Pseudomonas fluorescens Pf0-1  Bacteria  decreased coverage  0.00373051  normal  0.380766 
 
 
-
 
NC_009654  Mmwyl1_4035  carbamoyl phosphate synthase small subunit  70.74 
 
 		 396 aa  554  1e-156  Marinomonas sp. MWYL1  Bacteria  normal  0.311643  normal  1 
 
 
-
 
NC_010501  PputW619_0708  carbamoyl phosphate synthase small subunit  70.9 
 
 		 386 aa  551  1e-156  Pseudomonas putida W619  Bacteria  normal  0.44923  normal  0.0111499 
 
 
-
 
NC_007912  Sde_2729  carbamoyl-phosphate synthase small subunit  68.5 
 
 		 387 aa  548  1e-155  Saccharophagus degradans 2-40  Bacteria  normal  0.422158  normal  1 
 
 
-
 
NC_010322  PputGB1_4725  carbamoyl phosphate synthase small subunit  70.11 
 
 		 378 aa  550  1e-155  Pseudomonas putida GB-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009512  Pput_4590  carbamoyl phosphate synthase small subunit  69.84 
 
 		 386 aa  549  1e-155  Pseudomonas putida F1  Bacteria  normal  1  normal  0.740896 
 
 
-
 
NC_007005  Psyr_4192  carbamoyl phosphate synthase small subunit  69.58 
 
 		 378 aa  547  1e-154  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008740  Maqu_3359  carbamoyl-phosphate synthase, small subunit  69.81 
 
 		 381 aa  547  1e-154  Marinobacter aquaeolei VT8  Bacteria  normal  0.365692  n/a   
 
 
-
 
NC_007298  Daro_0938  carbamoyl-phosphate synthase small subunit  70 
 
 		 385 aa  538  9.999999999999999e-153  Dechloromonas aromatica RCB  Bacteria  normal  0.742428  normal  1 
 
 
-
 
NC_007947  Mfla_0778  carbamoyl-phosphate synthase small subunit  69.46 
 
 		 376 aa  527  1e-148  Methylobacillus flagellatus KT  Bacteria  normal  0.42563  hitchhiker  0.000147727 
 
 
-
 
NC_013889  TK90_0698  carbamoyl-phosphate synthase, small subunit  65.34 
 
 		 377 aa  527  1e-148  Thioalkalivibrio sp. K90mix  Bacteria  normal  1  normal  0.110228 
 
 
-
 
NC_002977  MCA1853  carbamoyl phosphate synthase small subunit  65.44 
 
 		 378 aa  522  1e-147  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0936768  n/a   
 
 
-
 
NC_011071  Smal_1811  carbamoyl phosphate synthase small subunit  64.75 
 
 		 393 aa  518  1e-146  Stenotrophomonas maltophilia R551-3  Bacteria  normal  1  normal  0.0542874 
 
 
-
 
NC_011662  Tmz1t_1731  carbamoyl phosphate synthase small subunit  68.17 
 
 		 380 aa  517  1.0000000000000001e-145  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_013422  Hneap_1563  carbamoyl-phosphate synthase, small subunit  66.85 
 
 		 377 aa  516  1.0000000000000001e-145  Halothiobacillus neapolitanus c2  Bacteria  normal  0.878317  n/a   
 
 
-
 
NC_007510  Bcep18194_A4432  carbamoyl phosphate synthase small subunit  66.04 
 
 		 380 aa  506  9.999999999999999e-143  Burkholderia sp. 383  Bacteria  hitchhiker  0.00120805  normal  1 
 
 
-
 
NC_010682  Rpic_2036  carbamoyl phosphate synthase small subunit  66.12 
 
 		 378 aa  502  1e-141  Ralstonia pickettii 12J  Bacteria  normal  0.534876  normal  1 
 
 
-
 
NC_010717  PXO_00088  carbamoyl phosphate synthase small subunit  63.9 
 
 		 390 aa  503  1e-141  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.562291  n/a   
 
 
-
 
NC_007948  Bpro_2679  carbamoyl phosphate synthase small subunit  64.21 
 
 		 401 aa  501  1e-141  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010508  Bcenmc03_1261  carbamoyl phosphate synthase small subunit  65.77 
 
 		 380 aa  503  1e-141  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0131767  normal  0.191599 
 
 
-
 
NC_012856  Rpic12D_1728  carbamoyl phosphate synthase small subunit  66.21 
 
 		 378 aa  504  1e-141  Ralstonia pickettii 12D  Bacteria  normal  0.590257  normal  0.961099 
 
 
-
 
NC_007404  Tbd_1127  carbamoyl-phosphate synthase small subunit  66.4 
 
 		 379 aa  499  1e-140  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.390679  normal  1 
 
 
-
 
NC_007969  Pcryo_0830  carbamoyl phosphate synthase small subunit  61.44 
 
 		 410 aa  498  1e-140  Psychrobacter cryohalolentis K5  Bacteria  normal  0.915619  normal  1 
 
 
-
 
NC_008060  Bcen_0809  carbamoyl phosphate synthase small subunit  65.5 
 
 		 380 aa  501  1e-140  Burkholderia cenocepacia AU 1054  Bacteria  normal  1  n/a   
 
 
-
 
NC_008340  Mlg_1982  carbamoyl-phosphate synthase small subunit  63.24 
 
 		 386 aa  498  1e-140  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.157941  normal  0.0125598 
 
 
-
 
NC_008542  Bcen2424_1290  carbamoyl phosphate synthase small subunit  65.5 
 
 		 380 aa  501  1e-140  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0948613  n/a   
 
 
-
 
NC_003295  RSc1519  carbamoyl phosphate synthase small subunit  65.67 
 
 		 378 aa  497  1e-139  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007347  Reut_A2177  carbamoyl phosphate synthase small subunit  64.89 
 
 		 378 aa  496  1e-139  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_007951  Bxe_A1256  carbamoyl phosphate synthase small subunit  65.6 
 
 		 391 aa  496  1e-139  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010524  Lcho_2823  carbamoyl-phosphate synthase, small subunit  62.76 
 
 		 394 aa  492  9.999999999999999e-139  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_006348  BMA0770  carbamoyl phosphate synthase small subunit  62.77 
 
 		 381 aa  491  9.999999999999999e-139  Burkholderia mallei ATCC 23344  Bacteria  normal  0.76287  n/a   
 
 
-
 
NC_007204  Psyc_0815  carbamoyl phosphate synthase small subunit  60.95 
 
 		 410 aa  492  9.999999999999999e-139  Psychrobacter arcticus 273-4  Bacteria  normal  1  normal  0.0593166 
 
 
-
 
NC_009080  BMA10247_0564  carbamoyl phosphate synthase small subunit  62.77 
 
 		 381 aa  491  9.999999999999999e-139  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_007434  BURPS1710b_1608  carbamoyl phosphate synthase small subunit  62.77 
 
 		 381 aa  492  9.999999999999999e-139  Burkholderia pseudomallei 1710b  Bacteria  normal  1  n/a   
 
 
-
 
NC_010551  BamMC406_1179  carbamoyl phosphate synthase small subunit  66.04 
 
 		 381 aa  493  9.999999999999999e-139  Burkholderia ambifaria MC40-6  Bacteria  normal  1  normal  0.381236 
 
 
-
 
NC_008785  BMASAVP1_A1281  carbamoyl phosphate synthase small subunit  62.77 
 
 		 381 aa  491  9.999999999999999e-139  Burkholderia mallei SAVP1  Bacteria  normal  0.697849  n/a   
 
 
-
 
NC_009379  Pnuc_1019  carbamoyl-phosphate synthase, small subunit  62.02 
 
 		 397 aa  492  9.999999999999999e-139  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010084  Bmul_2030  carbamoyl phosphate synthase small subunit  65.77 
 
 		 380 aa  492  9.999999999999999e-139  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.115427  normal  1 
 
 
-
 
NC_007651  BTH_I2783  carbamoyl phosphate synthase small subunit  62.96 
 
 		 381 aa  494  9.999999999999999e-139  Burkholderia thailandensis E264  Bacteria  normal  0.259596  n/a   
 
 
-
 
NC_009076  BURPS1106A_1505  carbamoyl phosphate synthase small subunit  62.77 
 
 		 381 aa  491  9.999999999999999e-139  Burkholderia pseudomallei 1106a  Bacteria  normal  0.188244  n/a   
 
 
-
 
NC_008836  BMA10229_A0587  carbamoyl phosphate synthase small subunit  62.77 
 
 		 381 aa  491  9.999999999999999e-139  Burkholderia mallei NCTC 10229  Bacteria  normal  0.368687  n/a   
 
 
-
 
NC_008390  Bamb_1167  carbamoyl phosphate synthase small subunit  66.04 
 
 		 380 aa  493  9.999999999999999e-139  Burkholderia ambifaria AMMD  Bacteria  normal  0.278191  n/a   
 
 
-
 
NC_008825  Mpe_A1261  carbamoyl-phosphate synthase small subunit  64.05 
 
 		 383 aa  491  9.999999999999999e-139  Methylibium petroleiphilum PM1  Bacteria  normal  1  decreased coverage  0.00672288 
 
 
-
 
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