14 homologs were found in PanDaTox collection
for query gene PC1_2884 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_012917  PC1_2884  regulatory protein DeoR  100 
 
 		 232 aa  471  1e-132  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  1  n/a   
 
 
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NC_013421  Pecwa_1387  regulatory protein DeoR  96.55 
 
 		 232 aa  454  1e-127  Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
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NC_010468  EcolC_3434  transcriptional regulator  54.46 
 
 		 237 aa  244  9.999999999999999e-64  Escherichia coli ATCC 8739  Bacteria  normal  1  normal  1 
 
 
-
 
CP001637  EcDH1_1041  putative transcriptional regulator  56.58 
 
 		 233 aa  232  4.0000000000000004e-60  Escherichia coli DH1  Bacteria  normal  1  n/a   
 
 
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NC_009708  YpsIP31758_0758  transcriptional regulator  50.9 
 
 		 233 aa  214  8e-55  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  1  n/a   
 
 
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NC_009801  EcE24377A_3405  hypothetical protein  44.93 
 
 		 226 aa  191  9e-48  Escherichia coli E24377A  Bacteria  normal  1  n/a   
 
 
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NC_010498  EcSMS35_3204  hypothetical protein  44.93 
 
 		 226 aa  191  9e-48  Escherichia coli SMS-3-5  Bacteria  normal  1  normal  1 
 
 
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NC_010498  EcSMS35_4799  hypothetical protein  44.93 
 
 		 226 aa  191  9e-48  Escherichia coli SMS-3-5  Bacteria  normal  1  normal  0.326133 
 
 
-
 
CP001637  EcDH1_3355  transcriptional regulator protein-like protein  90.32 
 
 		 285 aa  110  1.0000000000000001e-23  Escherichia coli DH1  Bacteria  normal  1  n/a   
 
 
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NC_012039  Cla_0031  conserved hypothetical protein, putative transcriptional regulator  28.84 
 
 		 288 aa  87.8  1e-16  Campylobacter lari RM2100  Bacteria  normal  0.718657  n/a   
 
 
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NC_003912  CJE0674  transcriptional regulator, putative  27.04 
 
 		 290 aa  82.8  0.000000000000004  Campylobacter jejuni RM1221  Bacteria  normal  1  n/a   
 
 
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NC_008781  Pnap_2746  helix-turn-helix, type 11 domain-containing protein  33.14 
 
 		 301 aa  79  0.00000000000006  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  0.0446014 
 
 
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NC_008609  Ppro_0219  helix-turn-helix, type 11 domain-containing protein  30.27 
 
 		 301 aa  68.6  0.00000000007  Pelobacter propionicus DSM 2379  Bacteria  normal  1  n/a   
 
 
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NC_007969  Pcryo_0924  transcriptional regulator-like  28.29 
 
 		 300 aa  68.6  0.00000000009  Psychrobacter cryohalolentis K5  Bacteria  normal  1  hitchhiker  0.00156607 
 
 
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