More than 300 homologs were found in PanDaTox collection
for query gene PC1_1979 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012917  PC1_1979  response regulator of RpoS  100 
 
 
338 aa  685    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.46167  n/a   
 
 
-
 
NC_013421  Pecwa_2280  response regulator of RpoS  94.08 
 
 
338 aa  630  1e-179  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0715238  n/a   
 
 
-
 
NC_012912  Dd1591_2201  response regulator of RpoS  74.26 
 
 
338 aa  508  1e-143  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_1959  response regulator of RpoS  71.6 
 
 
338 aa  501  1e-141  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_2710  response regulator of RpoS  65.68 
 
 
337 aa  446  1.0000000000000001e-124  Serratia proteamaculans 568  Bacteria  normal  0.317611  hitchhiker  0.000232648 
 
 
-
 
CP001509  ECD_01211  response regulator of RpoS  64.5 
 
 
337 aa  438  9.999999999999999e-123  Escherichia coli BL21(DE3)  Bacteria  normal  0.480052  n/a   
 
 
-
 
NC_009800  EcHS_A1343  response regulator of RpoS  64.5 
 
 
337 aa  438  9.999999999999999e-123  Escherichia coli HS  Bacteria  hitchhiker  0.00109338  n/a   
 
 
-
 
NC_012892  B21_01221  hypothetical protein  64.5 
 
 
337 aa  438  9.999999999999999e-123  Escherichia coli BL21  Bacteria  normal  0.417729  n/a   
 
 
-
 
NC_010498  EcSMS35_1906  response regulator of RpoS  64.5 
 
 
337 aa  438  9.999999999999999e-123  Escherichia coli SMS-3-5  Bacteria  normal  0.174648  normal  0.215745 
 
 
-
 
NC_009708  YpsIP31758_1969  response regulator of RpoS  65.38 
 
 
338 aa  439  9.999999999999999e-123  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.313928  n/a   
 
 
-
 
NC_011353  ECH74115_1720  response regulator of RpoS  64.5 
 
 
337 aa  438  9.999999999999999e-123  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.0232509  normal 
 
 
-
 
NC_009801  EcE24377A_1384  response regulator of RpoS  64.5 
 
 
337 aa  438  9.999999999999999e-123  Escherichia coli E24377A  Bacteria  normal  0.421294  n/a   
 
 
-
 
NC_010468  EcolC_2392  response regulator of RpoS  64.5 
 
 
337 aa  438  9.999999999999999e-123  Escherichia coli ATCC 8739  Bacteria  normal  hitchhiker  0.00000237009 
 
 
-
 
NC_010159  YpAngola_A2331  response regulator of RpoS  65.09 
 
 
338 aa  437  1e-121  Yersinia pestis Angola  Bacteria  hitchhiker  0.000591908  normal  0.501576 
 
 
-
 
NC_010465  YPK_2078  response regulator of RpoS  65.09 
 
 
338 aa  436  1e-121  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E1400  response regulator of RpoS  64.5 
 
 
337 aa  437  1e-121  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B1392  response regulator of RpoS  62.13 
 
 
337 aa  429  1e-119  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.00188361  n/a   
 
 
-
 
NC_011083  SeHA_C1943  response regulator of RpoS  62.13 
 
 
337 aa  429  1e-119  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.941531 
 
 
-
 
NC_011094  SeSA_A1886  response regulator of RpoS  62.13 
 
 
337 aa  429  1e-119  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0489347  normal  0.205124 
 
 
-
 
NC_011080  SNSL254_A1880  response regulator of RpoS  62.13 
 
 
337 aa  429  1e-119  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.239117  normal  0.804945 
 
 
-
 
NC_011205  SeD_A1575  response regulator of RpoS  62.13 
 
 
337 aa  430  1e-119  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.307447  normal 
 
 
-
 
NC_009436  Ent638_2308  response regulator of RpoS  63.91 
 
 
337 aa  420  1e-116  Enterobacter sp. 638  Bacteria  normal  0.863566  normal 
 
 
-
 
NC_009457  VC0395_A0568  response regulator  32.48 
 
 
368 aa  153  5e-36  Vibrio cholerae O395  Bacteria  hitchhiker  0.00216047  n/a   
 
 
-
 
NC_011312  VSAL_I1082  response regulator  30.48 
 
 
367 aa  148  1.0000000000000001e-34  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_03091  hypothetical protein  35.15 
 
 
368 aa  145  1e-33  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_002881  response regulator  36.4 
 
 
368 aa  144  2e-33  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2117  response regulator  27.96 
 
 
394 aa  114  3e-24  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0129975  n/a   
 
 
-
 
NC_010506  Swoo_1648  response regulator receiver protein  30.97 
 
 
367 aa  114  3e-24  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.0057956  normal 
 
 
-
 
NC_008463  PA14_27940  putative two-component response regulator  31.47 
 
 
394 aa  112  1.0000000000000001e-23  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_2359  putative two-component response regulator  30.88 
 
 
394 aa  110  2.0000000000000002e-23  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1396  response regulator receiver protein  26.72 
 
 
367 aa  109  6e-23  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00425013  normal  0.314583 
 
 
-
 
NC_010501  PputW619_1682  response regulator receiver modulated serine phosphatase  29.69 
 
 
412 aa  109  7.000000000000001e-23  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_1391  response regulator receiver protein  31.03 
 
 
368 aa  108  1e-22  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1912  response regulator receiver:stage II sporulation E  27.36 
 
 
394 aa  108  2e-22  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.432168  hitchhiker  0.00180426 
 
 
-
 
NC_007492  Pfl01_3849  response regulator receiver (CheY) modulated Serine phosphatase  28.88 
 
 
412 aa  108  2e-22  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.658628 
 
 
-
 
NC_009438  Sputcn32_2546  response regulator receiver protein  27.2 
 
 
376 aa  107  2e-22  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2165  response regulator  32.22 
 
 
393 aa  107  3e-22  Pseudomonas putida KT2440  Bacteria  normal  0.0249002  normal  0.813701 
 
 
-
 
NC_009512  Pput_3577  response regulator receiver protein  32.22 
 
 
393 aa  107  3e-22  Pseudomonas putida F1  Bacteria  decreased coverage  0.00266085  normal 
 
 
-
 
NC_010322  PputGB1_1706  response regulator receiver modulated serine phosphatase  30 
 
 
393 aa  107  3e-22  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.000168842 
 
 
-
 
NC_009831  Ssed_3036  response regulator receiver protein  27.91 
 
 
367 aa  105  1e-21  Shewanella sediminis HAW-EB3  Bacteria  normal  0.697745  hitchhiker  0.00756104 
 
 
-
 
NC_009439  Pmen_1929  response regulator receiver protein  28.07 
 
 
394 aa  105  1e-21  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.310245 
 
 
-
 
NC_008321  Shewmr4_1312  response regulator receiver protein  26.87 
 
 
367 aa  103  4e-21  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000399806  normal 
 
 
-
 
NC_008322  Shewmr7_1379  response regulator receiver protein  26.87 
 
 
367 aa  103  4e-21  Shewanella sp. MR-7  Bacteria  hitchhiker  0.00673289  normal  0.16507 
 
 
-
 
NC_012560  Avin_32720  Response regulator  27.58 
 
 
394 aa  103  6e-21  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1419  signal transduction histidine kinase  30.61 
 
 
551 aa  102  1e-20  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009997  Sbal195_3038  response regulator receiver protein  25.67 
 
 
367 aa  101  2e-20  Shewanella baltica OS195  Bacteria  normal  0.0232368  normal 
 
 
-
 
NC_011663  Sbal223_1467  response regulator receiver protein  25.29 
 
 
367 aa  99.8  6e-20  Shewanella baltica OS223  Bacteria  normal  0.0140274  normal 
 
 
-
 
NC_009052  Sbal_2896  response regulator receiver protein  25.29 
 
 
367 aa  99.4  7e-20  Shewanella baltica OS155  Bacteria  hitchhiker  0.00201335  n/a   
 
 
-
 
NC_009665  Shew185_2906  response regulator receiver protein  25.29 
 
 
367 aa  99  9e-20  Shewanella baltica OS185  Bacteria  normal  0.0132666  n/a   
 
 
-
 
NC_008577  Shewana3_1372  response regulator receiver protein  25.78 
 
 
367 aa  99  9e-20  Shewanella sp. ANA-3  Bacteria  normal  0.0119088  hitchhiker  0.0000873565 
 
 
-
 
NC_004347  SO_3196  response regulator  26.17 
 
 
367 aa  97.4  3e-19  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008700  Sama_2267  response regulator receiver protein  26.92 
 
 
367 aa  97.1  3e-19  Shewanella amazonensis SB2B  Bacteria  normal  0.0287525  normal  0.0560142 
 
 
-
 
NC_007912  Sde_1112  response regulator receiver domain-containing protein  25.16 
 
 
399 aa  96.3  6e-19  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2806  response regulator receiver protein  27.71 
 
 
373 aa  95.5  1e-18  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1356  response regulator receiver  27.05 
 
 
386 aa  90.1  5e-17  Shewanella denitrificans OS217  Bacteria  normal  0.235342  n/a   
 
 
-
 
NC_011769  DvMF_1544  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  39.66 
 
 
739 aa  87  4e-16  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.498595 
 
 
-
 
NC_013173  Dbac_2645  response regulator receiver modulated metal dependent phosphohydrolase  31.06 
 
 
364 aa  86.3  6e-16  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2828  response regulator receiver sensor signal transduction histidine kinase  37.39 
 
 
410 aa  85.9  0.000000000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0913  response regulator receiver sensor hybrid histidine kinase  38.14 
 
 
544 aa  85.9  0.000000000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1013  two component, sigma54 specific, transcriptional regulator, Fis family  37.5 
 
 
456 aa  84.3  0.000000000000003  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.0616674 
 
 
-
 
NC_011729  PCC7424_3648  response regulator receiver modulated serine phosphatase  25.63 
 
 
380 aa  82.4  0.00000000000001  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_010814  Glov_2461  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  33.05 
 
 
581 aa  81.6  0.00000000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_2177  response regulator receiver protein  36.52 
 
 
120 aa  80.5  0.00000000000003  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0064  histidine kinase  35.92 
 
 
598 aa  80.5  0.00000000000004  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011769  DvMF_3074  response regulator receiver modulated metal dependent phosphohydrolase  35.65 
 
 
363 aa  79.3  0.00000000000008  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008751  Dvul_2526  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  36.52 
 
 
715 aa  79.3  0.00000000000009  Desulfovibrio vulgaris DP4  Bacteria  normal  0.263284  normal  0.0502692 
 
 
-
 
NC_013132  Cpin_6438  putative two component, sigma54 specific, transcriptional regulator, Fis family  36 
 
 
394 aa  79  0.0000000000001  Chitinophaga pinensis DSM 2588  Bacteria  decreased coverage  0.00615091  normal  0.383003 
 
 
-
 
NC_010001  Cphy_1679  two component transcriptional regulator  35.53 
 
 
224 aa  79  0.0000000000001  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_0532  response regulator receiver /GGDEF/PAS/PAC domain-containing protein  35.34 
 
 
715 aa  77.8  0.0000000000002  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013124  Afer_0558  two component transcriptional regulator, winged helix family  38.18 
 
 
237 aa  78.2  0.0000000000002  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_2943  response regulator receiver modulated diguanylate cyclase  35.64 
 
 
438 aa  78.2  0.0000000000002  Magnetococcus sp. MC-1  Bacteria  normal  0.641955  normal 
 
 
-
 
NC_009921  Franean1_5311  two component transcriptional regulator  37.5 
 
 
246 aa  77.8  0.0000000000002  Frankia sp. EAN1pec  Bacteria  normal  0.554395  normal  0.310406 
 
 
-
 
NC_007519  Dde_1522  histidine kinase  35.09 
 
 
544 aa  77.4  0.0000000000004  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0628  two component, sigma54 specific, transcriptional regulator, Fis family  33.98 
 
 
446 aa  76.6  0.0000000000005  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_2881  two component transcriptional regulator, LuxR family  33.01 
 
 
212 aa  76.6  0.0000000000005  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009675  Anae109_2620  two component, sigma54 specific, Fis family transcriptional regulator  35.64 
 
 
532 aa  76.3  0.0000000000007  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.0658498  normal 
 
 
-
 
NC_014248  Aazo_2887  LuxR family two component transcriptional regulator  38.6 
 
 
225 aa  76.3  0.0000000000007  'Nostoc azollae' 0708  Bacteria  normal  0.526109  n/a   
 
 
-
 
NC_013411  GYMC61_1696  two component transcriptional regulator, winged helix family  40.2 
 
 
224 aa  76.3  0.0000000000007  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009943  Dole_0913  response regulator receiver protein  38.89 
 
 
301 aa  75.9  0.0000000000008  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.348072  n/a   
 
 
-
 
NC_010571  Oter_0607  two component transcriptional regulator  37.86 
 
 
248 aa  75.9  0.0000000000008  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_2459  multi-sensor signal transduction histidine kinase  31.9 
 
 
489 aa  75.9  0.0000000000009  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.854352 
 
 
-
 
NC_007413  Ava_3628  two component LuxR family transcriptional regulator  38.6 
 
 
225 aa  75.9  0.000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.717242  normal  0.142765 
 
 
-
 
NC_009972  Haur_2358  two component transcriptional regulator  40.59 
 
 
231 aa  75.1  0.000000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0136772  n/a   
 
 
-
 
NC_013522  Taci_0843  response regulator receiver protein  36.79 
 
 
251 aa  75.1  0.000000000001  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  hitchhiker  0.00000594696  n/a   
 
 
-
 
NC_011884  Cyan7425_2673  response regulator receiver modulated serine phosphatase  29.08 
 
 
392 aa  75.9  0.000000000001  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_008639  Cpha266_1801  integral membrane sensor hybrid histidine kinase  35.4 
 
 
699 aa  75.1  0.000000000001  Chlorobium phaeobacteroides DSM 266  Bacteria  unclonable  0.00000631548  n/a   
 
 
-
 
NC_008816  A9601_01511  two-component response regulator  39.6 
 
 
248 aa  75.5  0.000000000001  Prochlorococcus marinus str. AS9601  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0804  two component LuxR family transcriptional regulator  36.36 
 
 
204 aa  75.1  0.000000000002  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_009616  Tmel_0931  response regulator receiver protein  35.65 
 
 
120 aa  74.7  0.000000000002  Thermosipho melanesiensis BI429  Bacteria  normal  0.252152  n/a   
 
 
-
 
NC_009091  P9301_01531  two-component response regulator  39.6 
 
 
248 aa  75.1  0.000000000002  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  n/a   
 
 
-
 
NC_007577  PMT9312_0136  two component transcriptional regulator  39.6 
 
 
248 aa  75.1  0.000000000002  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_0751  two component, sigma54 specific, Fis family transcriptional regulator  34.17 
 
 
485 aa  74.7  0.000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0880271  normal 
 
 
-
 
NC_010814  Glov_2942  two component, sigma54 specific, transcriptional regulator, Fis family  26.75 
 
 
451 aa  75.1  0.000000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008817  P9515_01621  two-component response regulator  36.22 
 
 
248 aa  75.1  0.000000000002  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  0.367767  n/a   
 
 
-
 
NC_011662  Tmz1t_1843  two component, sigma54 specific, transcriptional regulator, Fis family  33.33 
 
 
465 aa  74.3  0.000000000002  Thauera sp. MZ1T  Bacteria  normal  0.798265  n/a   
 
 
-
 
NC_002939  GSU2915  sigma-54 dependent DNA-binding response regulator  26.7 
 
 
457 aa  74.3  0.000000000003  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_4376  LuxR response regulator receiver  28 
 
 
265 aa  74.3  0.000000000003  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.945677 
 
 
-
 
NC_012029  Hlac_2262  response regulator receiver modulated CheB methylesterase  33.33 
 
 
379 aa  73.9  0.000000000003  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  hitchhiker  0.00869886 
 
 
-
 
NC_009523  RoseRS_1088  two component transcriptional regulator  28.51 
 
 
264 aa  74.3  0.000000000003  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.237646 
 
 
-
 
NC_007912  Sde_0667  response regulator receiver domain-containing protein  37.14 
 
 
1526 aa  73.9  0.000000000004  Saccharophagus degradans 2-40  Bacteria  normal  0.0280955  hitchhiker  0.000000898802 
 
 
-
 
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