More than 300 homologs were found in PanDaTox collection
for query gene PC1_1369 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012917  PC1_1369  two component transcriptional regulator, LuxR family  100 
 
 
218 aa  443  1.0000000000000001e-124  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.380225  n/a   
 
 
-
 
NC_013421  Pecwa_1775  two component transcriptional regulator, LuxR family  97.61 
 
 
209 aa  414  9.999999999999999e-116  Pectobacterium wasabiae WPP163  Bacteria  normal  0.814588  n/a   
 
 
-
 
NC_012880  Dd703_2482  two component transcriptional regulator, LuxR family  81.55 
 
 
211 aa  343  1e-93  Dickeya dadantii Ech703  Bacteria  normal  0.46622  n/a   
 
 
-
 
NC_009708  YpsIP31758_2402  LuxR family DNA-binding response regulator  74.64 
 
 
209 aa  326  2.0000000000000001e-88  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.0000000000000137953  n/a   
 
 
-
 
NC_010159  YpAngola_A1688  LuxR family DNA-binding response regulator  74.64 
 
 
209 aa  326  2.0000000000000001e-88  Yersinia pestis Angola  Bacteria  hitchhiker  0.000000202542  normal  0.0533619 
 
 
-
 
NC_010465  YPK_2499  two component LuxR family transcriptional regulator  74.64 
 
 
209 aa  326  2.0000000000000001e-88  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.449467  n/a   
 
 
-
 
NC_011353  ECH74115_0438  transcriptional regulatory protein UhpA  73.33 
 
 
209 aa  294  7e-79  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_0836  two component LuxR family transcriptional regulator  74.87 
 
 
210 aa  293  1e-78  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0622  transcriptional regulator UhpA  62.32 
 
 
208 aa  254  9e-67  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000091  transcriptional regulatory protein UhpA  48.29 
 
 
202 aa  188  5e-47  Vibrio sp. Ex25  Bacteria  normal  0.136186  n/a   
 
 
-
 
NC_011083  SeHA_C4121  DNA-binding transcriptional activator UhpA  48.99 
 
 
196 aa  181  6e-45  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.97066  normal 
 
 
-
 
NC_011205  SeD_A4179  DNA-binding transcriptional activator UhpA  48.99 
 
 
196 aa  181  8.000000000000001e-45  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A4000  DNA-binding transcriptional activator UhpA  48.99 
 
 
196 aa  181  8.000000000000001e-45  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.348805  normal 
 
 
-
 
NC_011149  SeAg_B4016  DNA-binding transcriptional activator UhpA  48.99 
 
 
196 aa  181  8.000000000000001e-45  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A4071  DNA-binding transcriptional activator UhpA  48.99 
 
 
196 aa  181  8.000000000000001e-45  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_3504  DNA-binding transcriptional activator UhpA  47.74 
 
 
196 aa  178  5.999999999999999e-44  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_03553  DNA-binding response regulator in two-component regulatory system wtih UhpB  48.47 
 
 
196 aa  177  7e-44  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0034  two component transcriptional regulator, LuxR family  48.47 
 
 
196 aa  177  7e-44  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_4034  DNA-binding transcriptional activator UhpA  48.47 
 
 
196 aa  177  7e-44  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.383338 
 
 
-
 
NC_009800  EcHS_A3882  DNA-binding transcriptional activator UhpA  48.47 
 
 
196 aa  177  7e-44  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E4250  DNA-binding transcriptional activator UhpA  48.47 
 
 
196 aa  177  7e-44  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_4178  DNA-binding transcriptional activator UhpA  48.47 
 
 
196 aa  177  7e-44  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0030  DNA-binding transcriptional activator UhpA  48.47 
 
 
196 aa  177  7e-44  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_03495  hypothetical protein  48.47 
 
 
196 aa  177  7e-44  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_5099  DNA-binding transcriptional activator UhpA  48.47 
 
 
196 aa  177  7e-44  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.0828785 
 
 
-
 
NC_009436  Ent638_0027  DNA-binding transcriptional activator UhpA  47.45 
 
 
197 aa  176  2e-43  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A4132  two-component system response regulator  48.74 
 
 
196 aa  176  3e-43  Yersinia pestis Angola  Bacteria  normal  normal  0.249835 
 
 
-
 
NC_009708  YpsIP31758_4080  transcriptional regulatory protein UhpA  48.74 
 
 
196 aa  176  3e-43  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_0081  two component LuxR family transcriptional regulator  48.24 
 
 
196 aa  175  4e-43  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_0132  two component LuxR family transcriptional regulator  48.72 
 
 
196 aa  171  1e-41  Serratia proteamaculans 568  Bacteria  normal  0.401597  normal 
 
 
-
 
NC_013501  Rmar_1005  two component transcriptional regulator, LuxR family  42.03 
 
 
211 aa  148  7e-35  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_0153  two component transcriptional regulator, LuxR family  40.19 
 
 
210 aa  144  7.0000000000000006e-34  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1588  two component LuxR family transcriptional regulator  34.95 
 
 
215 aa  144  9e-34  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.731747  normal  0.987016 
 
 
-
 
NC_003295  RSc0292  response regulator transcription regulator protein  39.71 
 
 
210 aa  144  1e-33  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3042  two component LuxR family transcriptional regulator  37.74 
 
 
222 aa  144  1e-33  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.280021 
 
 
-
 
NC_007948  Bpro_4296  two component LuxR family transcriptional regulator  35.58 
 
 
214 aa  143  2e-33  Polaromonas sp. JS666  Bacteria  normal  0.891496  normal 
 
 
-
 
NC_007347  Reut_A0121  two component LuxR family transcriptional regulator  37.44 
 
 
210 aa  142  3e-33  Ralstonia eutropha JMP134  Bacteria  normal  0.830531  n/a   
 
 
-
 
NC_010682  Rpic_0145  two component transcriptional regulator, LuxR family  39.71 
 
 
210 aa  142  3e-33  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4628  two component LuxR family transcriptional regulator  35.02 
 
 
219 aa  142  3e-33  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B2471  two component LuxR family transcriptional regulator  39.9 
 
 
220 aa  142  5e-33  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.55611 
 
 
-
 
NC_008781  Pnap_0790  two component LuxR family transcriptional regulator  33.17 
 
 
214 aa  141  6e-33  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.870503  normal  0.997505 
 
 
-
 
NC_007347  Reut_A1785  two component LuxR family transcriptional regulator  37.13 
 
 
206 aa  141  9e-33  Ralstonia eutropha JMP134  Bacteria  normal  0.762084  n/a   
 
 
-
 
NC_010681  Bphyt_2656  two component transcriptional regulator, LuxR family  38.76 
 
 
210 aa  141  9e-33  Burkholderia phytofirmans PsJN  Bacteria  normal  0.756738  normal  0.520546 
 
 
-
 
NC_008825  Mpe_A2902  two component LuxR family transcriptional regulator  35.85 
 
 
212 aa  140  1.9999999999999998e-32  Methylibium petroleiphilum PM1  Bacteria  normal  0.255362  normal 
 
 
-
 
NC_008781  Pnap_0922  two component LuxR family transcriptional regulator  35.41 
 
 
210 aa  139  1.9999999999999998e-32  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.114328  normal 
 
 
-
 
NC_010322  PputGB1_3131  two component LuxR family transcriptional regulator  40.89 
 
 
212 aa  139  3e-32  Pseudomonas putida GB-1  Bacteria  normal  normal  0.33361 
 
 
-
 
NC_012560  Avin_17330  Two-component response regulator, LuxR family  38.21 
 
 
211 aa  139  3e-32  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0945  two component LuxR family transcriptional regulator  34.29 
 
 
210 aa  139  3.9999999999999997e-32  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1089  two component LuxR family transcriptional regulator  34.29 
 
 
210 aa  139  3.9999999999999997e-32  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_3091  two component LuxR family transcriptional regulator  40.89 
 
 
212 aa  138  6e-32  Pseudomonas putida F1  Bacteria  normal  0.425372  normal 
 
 
-
 
NC_007404  Tbd_2237  two component LuxR family transcriptional regulator  36.19 
 
 
211 aa  138  7.999999999999999e-32  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_0090  two component LuxR family transcriptional regulator  37.91 
 
 
210 aa  138  7.999999999999999e-32  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2672  LuxR family DNA-binding response regulator  40.89 
 
 
212 aa  137  8.999999999999999e-32  Pseudomonas putida KT2440  Bacteria  normal  0.24109  normal 
 
 
-
 
NC_007947  Mfla_1987  two component LuxR family transcriptional regulator  35.38 
 
 
215 aa  137  1e-31  Methylobacillus flagellatus KT  Bacteria  normal  0.0949899  normal 
 
 
-
 
NC_007948  Bpro_1167  two component LuxR family transcriptional regulator  34.29 
 
 
213 aa  137  1e-31  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A1460  two component LuxR family transcriptional regulator  37.8 
 
 
210 aa  137  1e-31  Burkholderia xenovorans LB400  Bacteria  normal  0.39219  normal  0.352919 
 
 
-
 
NC_010644  Emin_0306  two component LuxR family transcriptional regulator  35.85 
 
 
215 aa  137  1e-31  Elusimicrobium minutum Pei191  Bacteria  unclonable  0.000000000161342  hitchhiker  0.00000159266 
 
 
-
 
NC_008752  Aave_3862  two component LuxR family transcriptional regulator  37.44 
 
 
210 aa  137  1e-31  Acidovorax citrulli AAC00-1  Bacteria  normal  0.734244  normal 
 
 
-
 
NC_009943  Dole_0029  two component LuxR family transcriptional regulator  37.8 
 
 
214 aa  136  3.0000000000000003e-31  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.317943  n/a   
 
 
-
 
NC_010622  Bphy_1508  two component LuxR family transcriptional regulator  38.43 
 
 
236 aa  135  5e-31  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_1762  two component LuxR family transcriptional regulator  39.15 
 
 
210 aa  134  9.999999999999999e-31  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_0876  two component LuxR family transcriptional regulator  38.65 
 
 
233 aa  134  9.999999999999999e-31  Ruegeria sp. TM1040  Bacteria  normal  0.481499  normal  0.345787 
 
 
-
 
NC_008463  PA14_07840  putative two-component response regulator  35.07 
 
 
210 aa  134  9.999999999999999e-31  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.0171986 
 
 
-
 
NC_008782  Ajs_3509  two component LuxR family transcriptional regulator  36.32 
 
 
239 aa  134  9.999999999999999e-31  Acidovorax sp. JS42  Bacteria  normal  0.325902  normal 
 
 
-
 
NC_007948  Bpro_0881  two component LuxR family transcriptional regulator  33.97 
 
 
210 aa  133  1.9999999999999998e-30  Polaromonas sp. JS666  Bacteria  normal  0.464883  normal  0.594453 
 
 
-
 
NC_011312  VSAL_I2141  response regulator  36.36 
 
 
214 aa  133  1.9999999999999998e-30  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.126922  n/a   
 
 
-
 
NC_011992  Dtpsy_2832  two component transcriptional regulator, LuxR family  36.49 
 
 
210 aa  133  1.9999999999999998e-30  Acidovorax ebreus TPSY  Bacteria  normal  0.988429  n/a   
 
 
-
 
NC_013170  Ccur_06630  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  39.44 
 
 
215 aa  133  1.9999999999999998e-30  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.252447  normal  0.303532 
 
 
-
 
NC_008786  Veis_0032  two component LuxR family transcriptional regulator  36.36 
 
 
210 aa  133  1.9999999999999998e-30  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.245451  normal 
 
 
-
 
NC_011891  A2cp1_2172  two component transcriptional regulator, LuxR family  39.05 
 
 
210 aa  133  3e-30  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_0745  putative two-component response regulator  35.07 
 
 
210 aa  132  3e-30  Pseudomonas aeruginosa PA7  Bacteria  normal  0.536324  n/a   
 
 
-
 
NC_009783  VIBHAR_02748  response regulator  35.41 
 
 
214 aa  132  3e-30  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008146  Mmcs_0590  two component LuxR family transcriptional regulator  36.79 
 
 
215 aa  132  3.9999999999999996e-30  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0603  two component LuxR family transcriptional regulator  36.79 
 
 
215 aa  132  3.9999999999999996e-30  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_0581  two component LuxR family transcriptional regulator  36.79 
 
 
215 aa  132  3.9999999999999996e-30  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_1103  two component transcriptional regulator, LuxR family  38.64 
 
 
216 aa  131  6e-30  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011071  Smal_1888  two component transcriptional regulator, LuxR family  35.92 
 
 
212 aa  131  6e-30  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.265772 
 
 
-
 
NC_013061  Phep_2735  response regulator receiver  32.72 
 
 
224 aa  132  6e-30  Pedobacter heparinus DSM 2366  Bacteria  normal  0.0572845  normal 
 
 
-
 
NC_013204  Elen_1743  two component transcriptional regulator, LuxR family  35.85 
 
 
214 aa  131  7.999999999999999e-30  Eggerthella lenta DSM 2243  Bacteria  normal  0.370009  normal  0.039988 
 
 
-
 
NC_010676  Bphyt_6235  two component transcriptional regulator, LuxR family  34.76 
 
 
210 aa  131  9e-30  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.612124 
 
 
-
 
NC_010524  Lcho_1402  two component LuxR family transcriptional regulator  38.1 
 
 
211 aa  131  9e-30  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_013456  VEA_003136  transcriptional regulator LuxR family protein  35.92 
 
 
212 aa  130  1.0000000000000001e-29  Vibrio sp. Ex25  Bacteria  normal  0.12843  n/a   
 
 
-
 
NC_008825  Mpe_A2603  two component LuxR family transcriptional regulator  40.48 
 
 
222 aa  130  1.0000000000000001e-29  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_2078  two component transcriptional regulator, LuxR family  38.21 
 
 
210 aa  130  2.0000000000000002e-29  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_5717  two component LuxR family transcriptional regulator  38.12 
 
 
220 aa  130  2.0000000000000002e-29  Methylobacterium sp. 4-46  Bacteria  normal  0.873964  hitchhiker  0.00405289 
 
 
-
 
NC_007492  Pfl01_5126  two component LuxR family transcriptional regulator  36.02 
 
 
209 aa  130  2.0000000000000002e-29  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.135043  normal  0.384971 
 
 
-
 
NC_010524  Lcho_0901  two component LuxR family transcriptional regulator  34.88 
 
 
235 aa  130  2.0000000000000002e-29  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_013124  Afer_1446  two component transcriptional regulator, LuxR family  40.41 
 
 
223 aa  130  2.0000000000000002e-29  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_1600  two component LuxR family transcriptional regulator  37.68 
 
 
207 aa  130  2.0000000000000002e-29  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_6558  two component LuxR family transcriptional regulator  33.81 
 
 
210 aa  130  2.0000000000000002e-29  Burkholderia phymatum STM815  Bacteria  normal  normal  0.458284 
 
 
-
 
NC_010725  Mpop_3747  two component transcriptional regulator, LuxR family  33.49 
 
 
221 aa  129  3e-29  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_3668  two component transcriptional regulator, LuxR family  37.62 
 
 
213 aa  129  3e-29  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_4516  two component LuxR family transcriptional regulator  36.02 
 
 
214 aa  129  3e-29  Cupriavidus metallidurans CH34  Bacteria  normal  0.0463384  normal  0.0270495 
 
 
-
 
NC_008340  Mlg_2722  two component LuxR family transcriptional regulator  37.56 
 
 
214 aa  129  3e-29  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.378798 
 
 
-
 
NC_010002  Daci_1809  two component LuxR family transcriptional regulator  36.02 
 
 
210 aa  129  3e-29  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_1572  two component LuxR family transcriptional regulator  33.81 
 
 
218 aa  128  5.0000000000000004e-29  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.972408 
 
 
-
 
NC_007908  Rfer_1873  two component LuxR family transcriptional regulator  34.88 
 
 
219 aa  129  5.0000000000000004e-29  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_3747  two component LuxR family transcriptional regulator  31.37 
 
 
206 aa  128  5.0000000000000004e-29  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_2202  two component transcriptional regulator, LuxR family  32.69 
 
 
213 aa  128  5.0000000000000004e-29  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1400  two component LuxR family transcriptional regulator  33.33 
 
 
216 aa  128  6e-29  Dechloromonas aromatica RCB  Bacteria  normal  0.973321  normal  0.0605156 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>