59 homologs were found in PanDaTox collection
for query gene PC1_0554 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_012917  PC1_0554  putative transcriptional regulator, Nlp  100 
 
 		 87 aa  175  2e-43  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  unclonable  0.0000290872  n/a   
 
 
-
 
NC_013421  Pecwa_0789  putative transcriptional regulator, Nlp  97.7 
 
 		 87 aa  171  2.9999999999999996e-42  Pectobacterium wasabiae WPP163  Bacteria  unclonable  0.00000116057  n/a   
 
 
-
 
NC_012880  Dd703_3364  putative transcriptional regulator, Nlp  89.53 
 
 		 87 aa  152  1e-36  Dickeya dadantii Ech703  Bacteria  hitchhiker  0.00000262208  n/a   
 
 
-
 
NC_010465  YPK_3760  putative transcriptional regulator, Nlp  81.4 
 
 		 91 aa  147  6e-35  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.0154648  n/a   
 
 
-
 
NC_009708  YpsIP31758_3615  sugar fermentation stimulation protein B  81.4 
 
 		 91 aa  147  6e-35  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.00380943  n/a   
 
 
-
 
NC_009832  Spro_0470  putative transcriptional regulator, Nlp  82.35 
 
 		 86 aa  143  9e-34  Serratia proteamaculans 568  Bacteria  hitchhiker  0.00000220892  normal  1 
 
 
-
 
NC_012912  Dd1591_3282  putative transcriptional regulator, Nlp  76.47 
 
 		 95 aa  139  9.999999999999999e-33  Dickeya zeae Ech1591  Bacteria  normal  0.369653  n/a   
 
 
-
 
NC_012880  Dd703_3204  putative transcriptional regulator, Nlp  75.29 
 
 		 90 aa  135  2e-31  Dickeya dadantii Ech703  Bacteria  normal  1  n/a   
 
 
-
 
NC_012880  Dd703_3547  putative transcriptional regulator, Nlp  75.31 
 
 		 88 aa  124  3e-28  Dickeya dadantii Ech703  Bacteria  normal  0.687539  n/a   
 
 
-
 
NC_012912  Dd1591_3706  putative transcriptional regulator, Nlp  74.07 
 
 		 88 aa  122  1e-27  Dickeya zeae Ech1591  Bacteria  normal  1  n/a   
 
 
-
 
NC_012917  PC1_4122  putative transcriptional regulator, Nlp  69.88 
 
 		 85 aa  122  2e-27  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  hitchhiker  0.00284787  n/a   
 
 
-
 
NC_012912  Dd1591_0412  putative transcriptional regulator, Nlp  74.03 
 
 		 84 aa  120  7e-27  Dickeya zeae Ech1591  Bacteria  normal  1  n/a   
 
 
-
 
NC_013421  Pecwa_1604  putative transcriptional regulator, Nlp  72.73 
 
 		 84 aa  119  1.9999999999999998e-26  Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
-
 
NC_012912  Dd1591_0415  putative transcriptional regulator, Nlp  71.6 
 
 		 95 aa  118  3e-26  Dickeya zeae Ech1591  Bacteria  normal  1  n/a   
 
 
-
 
NC_012912  Dd1591_1511  putative transcriptional regulator, Nlp  77.03 
 
 		 90 aa  118  3e-26  Dickeya zeae Ech1591  Bacteria  normal  1  n/a   
 
 
-
 
NC_011353  ECH74115_4510  DNA-binding transcriptional regulator Nlp  72.15 
 
 		 92 aa  117  4.9999999999999996e-26  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.000173823  normal  0.989059 
 
 
-
 
NC_010468  EcolC_0512  DNA-binding transcriptional regulator Nlp  72.15 
 
 		 92 aa  117  4.9999999999999996e-26  Escherichia coli ATCC 8739  Bacteria  hitchhiker  0.00792523  normal  0.0634944 
 
 
-
 
CP001637  EcDH1_0519  putative transcriptional regulator, Nlp  72.15 
 
 		 92 aa  117  4.9999999999999996e-26  Escherichia coli DH1  Bacteria  hitchhiker  0.0000202427  n/a   
 
 
-
 
CP001509  ECD_03053  DNA-binding transcriptional activator of maltose metabolism  72.15 
 
 		 92 aa  117  4.9999999999999996e-26  Escherichia coli BL21(DE3)  Bacteria  normal  0.044476  n/a   
 
 
-
 
NC_012892  B21_03004  hypothetical protein  72.15 
 
 		 92 aa  117  4.9999999999999996e-26  Escherichia coli BL21  Bacteria  normal  0.0319542  n/a   
 
 
-
 
NC_009801  EcE24377A_3674  DNA-binding transcriptional regulator Nlp  72.15 
 
 		 92 aa  117  4.9999999999999996e-26  Escherichia coli E24377A  Bacteria  hitchhiker  0.00000245741  n/a   
 
 
-
 
NC_009800  EcHS_A3381  DNA-binding transcriptional regulator Nlp  72.15 
 
 		 92 aa  117  4.9999999999999996e-26  Escherichia coli HS  Bacteria  hitchhiker  0.00000000000107042  n/a   
 
 
-
 
NC_010498  EcSMS35_3484  DNA-binding transcriptional regulator Nlp  72.15 
 
 		 92 aa  117  6e-26  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.00516698  normal  1 
 
 
-
 
NC_011205  SeD_A3665  DNA-binding transcriptional regulator Nlp  70.89 
 
 		 95 aa  115  9.999999999999999e-26  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  hitchhiker  0.000392982  normal  0.0663966 
 
 
-
 
NC_011149  SeAg_B3496  DNA-binding transcriptional regulator Nlp  70.89 
 
 		 95 aa  115  9.999999999999999e-26  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.00000769249  n/a   
 
 
-
 
NC_011094  SeSA_A3498  DNA-binding transcriptional regulator Nlp  70.89 
 
 		 95 aa  115  9.999999999999999e-26  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0588658  normal  1 
 
 
-
 
NC_011083  SeHA_C3603  DNA-binding transcriptional regulator Nlp  70.89 
 
 		 95 aa  115  9.999999999999999e-26  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.481133  normal  0.371215 
 
 
-
 
NC_011080  SNSL254_A3567  DNA-binding transcriptional regulator Nlp  70.89 
 
 		 95 aa  115  9.999999999999999e-26  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  hitchhiker  0.000426045  normal  1 
 
 
-
 
NC_013421  Pecwa_1690  putative transcriptional regulator, Nlp  74.32 
 
 		 126 aa  115  1.9999999999999998e-25  Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
-
 
NC_010658  SbBS512_E3582  DNA-binding transcriptional regulator Nlp  70.89 
 
 		 92 aa  115  1.9999999999999998e-25  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.000000128887  n/a   
 
 
-
 
NC_009436  Ent638_3624  DNA-binding transcriptional regulator Nlp  70.89 
 
 		 95 aa  114  3.9999999999999997e-25  Enterobacter sp. 638  Bacteria  hitchhiker  0.0000112676  normal  0.241472 
 
 
-
 
NC_013421  Pecwa_1605  putative transcriptional regulator, Nlp  61.18 
 
 		 92 aa  108  3e-23  Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
-
 
NC_013421  Pecwa_0716  putative transcriptional regulator, Nlp  71.83 
 
 		 73 aa  107  7.000000000000001e-23  Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
-
 
NC_009708  YpsIP31758_2981  sugar fermentation stimulation protein B  65.75 
 
 		 81 aa  106  1e-22  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  1  n/a   
 
 
-
 
NC_010159  YpAngola_A1882  sugar fermentation stimulation protein B  65.75 
 
 		 81 aa  106  1e-22  Yersinia pestis Angola  Bacteria  normal  0.112959  hitchhiker  0.000217227 
 
 
-
 
NC_012917  PC1_0869  putative transcriptional regulator, Nlp  70.42 
 
 		 73 aa  106  1e-22  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.775938  n/a   
 
 
-
 
NC_010465  YPK_3055  putative transcriptional regulator, Nlp  65.75 
 
 		 81 aa  106  1e-22  Yersinia pseudotuberculosis YPIII  Bacteria  normal  1  n/a   
 
 
-
 
NC_012912  Dd1591_1156  putative transcriptional regulator, Nlp  73.91 
 
 		 81 aa  105  2e-22  Dickeya zeae Ech1591  Bacteria  normal  1  n/a   
 
 
-
 
NC_011083  SeHA_C2923  regulator for maltose metabolism  65.38 
 
 		 94 aa  105  2e-22  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.585946  hitchhiker  0.000573854 
 
 
-
 
NC_012917  PC1_2998  putative transcriptional regulator, Nlp  76.12 
 
 		 71 aa  103  6e-22  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_012912  Dd1591_1499  putative transcriptional regulator, Nlp  67.5 
 
 		 95 aa  103  6e-22  Dickeya zeae Ech1591  Bacteria  normal  1  n/a   
 
 
-
 
NC_012880  Dd703_3226  putative transcriptional regulator, Nlp  70.42 
 
 		 81 aa  101  3e-21  Dickeya dadantii Ech703  Bacteria  normal  0.78632  n/a   
 
 
-
 
NC_012912  Dd1591_0904  putative transcriptional regulator, Nlp  77.78 
 
 		 82 aa  99  2e-20  Dickeya zeae Ech1591  Bacteria  normal  1  n/a   
 
 
-
 
NC_011083  SeHA_C2616  regulator for maltose metabolism  57.35 
 
 		 82 aa  82  0.000000000000003  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  1  hitchhiker  0.00105076 
 
 
-
 
NC_011080  SNSL254_A2563  maltose metabolism regulator  57.35 
 
 		 82 aa  81.6  0.000000000000003  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010465  YPK_0217  putative transcriptional regulator, Nlp  53.97 
 
 		 81 aa  73.9  0.0000000000007  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.228341  n/a   
 
 
-
 
NC_011901  Tgr7_1668  putative transcriptional regulator, Nlp  50 
 
 		 97 aa  68.9  0.00000000002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  1  n/a   
 
 
-
 
NC_009457  VC0395_A0788  hypothetical protein  46.88 
 
 		 74 aa  64.3  0.0000000005  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000117645  n/a   
 
 
-
 
NC_009457  VC0395_A0649  hypothetical protein  46.88 
 
 		 74 aa  64.3  0.0000000005  Vibrio cholerae O395  Bacteria  normal  0.179596  n/a   
 
 
-
 
NC_004347  SO_2653  Ner family transcriptional regulator  46.88 
 
 		 74 aa  64.3  0.0000000005  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011901  Tgr7_2480  putative transcriptional regulator, Nlp  50 
 
 		 98 aa  64.3  0.0000000006  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  1  n/a   
 
 
-
 
NC_009720  Xaut_4530  putative transcriptional regulator, Nlp  47.62 
 
 		 112 aa  62.8  0.000000002  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  0.974254 
 
 
-
 
NC_013421  Pecwa_2698  putative transcriptional regulator, Nlp  62.5 
 
 		 53 aa  62.8  0.000000002  Pectobacterium wasabiae WPP163  Bacteria  normal  0.897139  n/a   
 
 
-
 
NC_007948  Bpro_0997  putative transcriptional regulator, Nlp  42.65 
 
 		 125 aa  62  0.000000003  Polaromonas sp. JS666  Bacteria  normal  0.945966  hitchhiker  0.000234397 
 
 
-
 
NC_012918  GM21_3702  putative transcriptional regulator, Nlp  46.88 
 
 		 103 aa  60.8  0.000000005  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_008752  Aave_4116  putative transcriptional regulator, Nlp  38.24 
 
 		 90 aa  53.9  0.0000006  Acidovorax citrulli AAC00-1  Bacteria  normal  1  hitchhiker  0.00000147117 
 
 
-
 
NC_011004  Rpal_0642  putative transcriptional regulator, Nlp  43.08 
 
 		 99 aa  53.5  0.0000009  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009140  SNSL254_pSN254_0191  hypothetical protein  39.39 
 
 		 90 aa  47.4  0.00007  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  1  hitchhiker  0.0000000930698 
 
 
-
 
NC_011989  Avi_3041  hypothetical protein  43.75 
 
 		 106 aa  41.2  0.005  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
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