22 homologs were found in PanDaTox collection
for query gene Nham_0047 on replicon NC_007964
Organism: Nitrobacter hamburgensis X14



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007406  Nwi_0039  hypothetical protein  74.78 
 
 
447 aa  660  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.304092  normal  0.27217 
 
 
-
 
NC_007964  Nham_0047  peptidoglycan binding domain-containing protein  100 
 
 
448 aa  895  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0618  peptidoglycan binding domain-containing protein  61.82 
 
 
460 aa  543  1e-153  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.559119  normal  0.773085 
 
 
-
 
NC_007925  RPC_0365  peptidoglycan binding domain-containing protein  63.18 
 
 
456 aa  532  1e-150  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.396847  normal 
 
 
-
 
NC_007958  RPD_0214  peptidoglycan binding domain-containing protein  62.14 
 
 
454 aa  524  1e-147  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.103118 
 
 
-
 
NC_009485  BBta_0075  peptidoglycan binding domain-containing protein  58.92 
 
 
459 aa  486  1e-136  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.542735 
 
 
-
 
NC_011004  Rpal_0088  Peptidoglycan-binding domain 1 protein  59.07 
 
 
448 aa  469  1e-131  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_1389  Peptidoglycan-binding domain 1 protein  27.74 
 
 
484 aa  113  7e-24  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1393  peptidoglycan binding domain-containing protein  31.71 
 
 
491 aa  111  3e-23  Methylobacterium extorquens PA1  Bacteria  normal  hitchhiker  0.00241156 
 
 
-
 
NC_011757  Mchl_1668  Peptidoglycan-binding domain 1 protein  31.22 
 
 
500 aa  109  9e-23  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.844138 
 
 
-
 
NC_011894  Mnod_1737  Peptidoglycan-binding domain 1 protein  29.59 
 
 
466 aa  100  5e-20  Methylobacterium nodulans ORS 2060  Bacteria  hitchhiker  0.00165447  n/a   
 
 
-
 
NC_010505  Mrad2831_1102  peptidoglycan binding domain-containing protein  25.23 
 
 
490 aa  81.6  2e-14  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0401  peptidoglycan binding domain-containing protein  26.15 
 
 
487 aa  82.4  2e-14  Methylobacterium sp. 4-46  Bacteria  normal  0.039914  normal  0.803318 
 
 
-
 
NC_009428  Rsph17025_0641  peptidoglycan binding domain-containing protein  24.24 
 
 
589 aa  79.3  1e-13  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.757288 
 
 
-
 
NC_009049  Rsph17029_0504  peptidoglycan binding domain-containing protein  22.9 
 
 
593 aa  77  7e-13  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1855  hypothetical protein  22.9 
 
 
593 aa  75.5  2e-12  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_2734  peptidoglycan binding domain-containing protein  22.82 
 
 
585 aa  67  7e-10  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_2405  hypothetical protein  22.5 
 
 
576 aa  59.7  1e-07  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.0566608  normal 
 
 
-
 
NC_008044  TM1040_2313  peptidoglycan binding domain-containing protein  24.14 
 
 
596 aa  58.5  2e-07  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6421  peptidoglycan binding domain-containing protein  22.77 
 
 
513 aa  51.2  4e-05  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_002950  PG0593  htrA protein  28.42 
 
 
498 aa  44.7  0.004  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_011666  Msil_1261  Peptidoglycan-binding domain 1 protein  19.37 
 
 
485 aa  43.9  0.005  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
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