More than 300 homologs were found in PanDaTox collection
for query gene Ndas_4549 on replicon NC_014210
Organism: Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_014210  Ndas_4549  two component transcriptional regulator, winged helix family  100 
 
 
221 aa  425  1e-118  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.703481  normal 
 
 
-
 
NC_013757  Gobs_4693  two component transcriptional regulator, winged helix family  57.94 
 
 
220 aa  237  1e-61  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_31270  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  58.88 
 
 
221 aa  235  4e-61  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.014564  normal  0.249814 
 
 
-
 
NC_007413  Ava_2440  two component transcriptional regulator  53.46 
 
 
222 aa  225  3e-58  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0936231  normal 
 
 
-
 
NC_014210  Ndas_4793  two component transcriptional regulator, winged helix family  54.21 
 
 
219 aa  225  5.0000000000000005e-58  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.732153 
 
 
-
 
NC_007333  Tfu_1330  response regulator receiver  53.02 
 
 
219 aa  223  1e-57  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_4258  response regulator receiver  54.63 
 
 
220 aa  223  2e-57  Gordonia bronchialis DSM 43247  Bacteria  normal  0.0567705  n/a   
 
 
-
 
NC_011884  Cyan7425_1566  two component transcriptional regulator, winged helix family  51.83 
 
 
228 aa  217  1e-55  Cyanothece sp. PCC 7425  Bacteria  normal  hitchhiker  0.00435599 
 
 
-
 
NC_011729  PCC7424_2242  two component transcriptional regulator, winged helix family  52.29 
 
 
224 aa  216  2e-55  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.415885 
 
 
-
 
NC_007413  Ava_0615  two component transcriptional regulator  53.67 
 
 
228 aa  216  2e-55  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0841359  normal  0.719107 
 
 
-
 
NC_008148  Rxyl_0187  two component transcriptional regulator  57.27 
 
 
227 aa  216  2e-55  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_2802  two component transcriptional regulator, winged helix family  56.74 
 
 
220 aa  213  9.999999999999999e-55  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.232869  normal 
 
 
-
 
NC_008699  Noca_2006  response regulator receiver  58.72 
 
 
223 aa  213  9.999999999999999e-55  Nocardioides sp. JS614  Bacteria  normal  0.379718  n/a   
 
 
-
 
NC_013169  Ksed_21520  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  52.29 
 
 
222 aa  212  3.9999999999999995e-54  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.0794896  hitchhiker  0.0000630157 
 
 
-
 
NC_011831  Cagg_1351  two component transcriptional regulator, winged helix family  53.36 
 
 
225 aa  212  3.9999999999999995e-54  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00188361  unclonable  0.0000000206018 
 
 
-
 
NC_009767  Rcas_2487  two component transcriptional regulator  54.55 
 
 
224 aa  209  2e-53  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.431556  normal 
 
 
-
 
NC_009523  RoseRS_2290  two component transcriptional regulator  53.18 
 
 
224 aa  206  2e-52  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_0243  two component transcriptional regulator, winged helix family  46.4 
 
 
224 aa  204  1e-51  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.000226454  n/a   
 
 
-
 
NC_011884  Cyan7425_3411  two component transcriptional regulator, winged helix family  50.46 
 
 
224 aa  204  1e-51  Cyanothece sp. PCC 7425  Bacteria  normal  0.591115  normal 
 
 
-
 
NC_009483  Gura_4293  two component transcriptional regulator  45.95 
 
 
224 aa  204  1e-51  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000934276  n/a   
 
 
-
 
NC_009921  Franean1_3859  two component transcriptional regulator  51.82 
 
 
235 aa  203  2e-51  Frankia sp. EAN1pec  Bacteria  normal  0.0389848  normal 
 
 
-
 
NC_012669  Bcav_3167  two component transcriptional regulator, winged helix family  56.54 
 
 
218 aa  203  2e-51  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.436774  normal  0.0676898 
 
 
-
 
NC_009921  Franean1_5704  two component transcriptional regulator  56.07 
 
 
220 aa  203  2e-51  Frankia sp. EAN1pec  Bacteria  normal  0.0158381  normal 
 
 
-
 
NC_007517  Gmet_3383  two component transcriptional regulator  45.95 
 
 
224 aa  202  3e-51  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0451  DNA-binding response regulator  45.95 
 
 
224 aa  202  4e-51  Geobacter sulfurreducens PCA  Bacteria  normal  0.313098  n/a   
 
 
-
 
NC_013947  Snas_4900  two component transcriptional regulator, winged helix family  54.38 
 
 
221 aa  201  7e-51  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.196174  normal 
 
 
-
 
NC_009972  Haur_2799  two component transcriptional regulator  51.36 
 
 
236 aa  201  9e-51  Herpetosiphon aurantiacus ATCC 23779  Bacteria  unclonable  0.000000368356  n/a   
 
 
-
 
NC_012918  GM21_0227  two component transcriptional regulator, winged helix family  45.95 
 
 
224 aa  201  9.999999999999999e-51  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013172  Bfae_02960  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  48.25 
 
 
229 aa  199  3e-50  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_0389  winged helix family two component transcriptional regulator  50.23 
 
 
224 aa  197  1.0000000000000001e-49  'Nostoc azollae' 0708  Bacteria  normal  0.667669  n/a   
 
 
-
 
NC_008726  Mvan_2389  two component transcriptional regulator  51.16 
 
 
219 aa  196  2.0000000000000003e-49  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.753035  normal  0.0318145 
 
 
-
 
NC_013525  Tter_1435  two component transcriptional regulator, winged helix family  49.32 
 
 
233 aa  196  3e-49  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007498  Pcar_3081  two component signal transduction response regulator  43.5 
 
 
223 aa  195  4.0000000000000005e-49  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1478  two component transcriptional regulator  46.82 
 
 
240 aa  195  5.000000000000001e-49  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.0000111909  normal 
 
 
-
 
NC_012034  Athe_0280  two component transcriptional regulator, winged helix family  43.11 
 
 
225 aa  194  7e-49  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0632  two component transcriptional regulator  44.2 
 
 
227 aa  194  7e-49  Shewanella baltica OS195  Bacteria  normal  0.157641  normal 
 
 
-
 
NC_009665  Shew185_0604  two component transcriptional regulator  44.2 
 
 
227 aa  194  7e-49  Shewanella baltica OS185  Bacteria  decreased coverage  0.00704602  n/a   
 
 
-
 
NC_009338  Mflv_3998  two component transcriptional regulator  50.7 
 
 
220 aa  194  1e-48  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.278973  normal  0.137181 
 
 
-
 
NC_013525  Tter_1098  two component transcriptional regulator, winged helix family  49.54 
 
 
228 aa  194  1e-48  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009664  Krad_3036  two component transcriptional regulator, winged helix family  50 
 
 
273 aa  194  1e-48  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.106658  normal 
 
 
-
 
NC_011886  Achl_2869  two component transcriptional regulator, winged helix family  52.56 
 
 
232 aa  193  2e-48  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_010001  Cphy_0015  two component transcriptional regulator  46.88 
 
 
228 aa  192  3e-48  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_1873  two component transcriptional regulator  47.27 
 
 
226 aa  192  3e-48  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_0293  two component transcriptional regulator, winged helix family  51.33 
 
 
226 aa  191  6e-48  Conexibacter woesei DSM 14684  Bacteria  normal  0.591061  normal  0.658536 
 
 
-
 
NC_009092  Shew_3258  two component heavy metal response transcriptional regulator  42.22 
 
 
238 aa  191  9e-48  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00206307  normal  0.0675777 
 
 
-
 
NC_013132  Cpin_1247  two component transcriptional regulator, winged helix family  43.35 
 
 
235 aa  191  1e-47  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.464606  normal 
 
 
-
 
NC_013521  Sked_37500  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  49.33 
 
 
225 aa  189  2e-47  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.0213695  normal 
 
 
-
 
NC_009953  Sare_2277  two component transcriptional regulator  47.96 
 
 
248 aa  188  5e-47  Salinispora arenicola CNS-205  Bacteria  normal  0.113906  normal  0.0109188 
 
 
-
 
NC_008527  LACR_1090  DNA-binding response regulator  45.95 
 
 
228 aa  188  7e-47  Lactococcus lactis subsp. cremoris SK11  Bacteria  decreased coverage  0.00019826  n/a   
 
 
-
 
NC_009380  Strop_2130  response regulator receiver  47.96 
 
 
252 aa  187  1e-46  Salinispora tropica CNB-440  Bacteria  normal  0.539517  hitchhiker  0.00279069 
 
 
-
 
NC_008699  Noca_3695  response regulator receiver  48.64 
 
 
236 aa  187  1e-46  Nocardioides sp. JS614  Bacteria  normal  0.795948  n/a   
 
 
-
 
NC_011830  Dhaf_2231  two component transcriptional regulator, winged helix family  46.4 
 
 
226 aa  186  2e-46  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_4710  two component transcriptional regulator, winged helix family  53.64 
 
 
224 aa  186  2e-46  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_2401  two component transcriptional regulator  48.64 
 
 
283 aa  186  2e-46  Frankia sp. CcI3  Bacteria  normal  0.0476592  normal  0.0197415 
 
 
-
 
NC_007952  Bxe_B1748a  hypothetical protein  45.98 
 
 
223 aa  186  2e-46  Burkholderia xenovorans LB400  Bacteria  normal  0.0697031  normal  0.305387 
 
 
-
 
NC_010831  Cphamn1_0990  two component transcriptional regulator, winged helix family  44.95 
 
 
222 aa  186  2e-46  Chlorobium phaeobacteroides BS1  Bacteria  hitchhiker  0.000957791  decreased coverage  0.0000715536 
 
 
-
 
NC_007777  Francci3_0321  two component transcriptional regulator  47.96 
 
 
406 aa  186  3e-46  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_008527  LACR_0898  DNA-binding response regulator  43.78 
 
 
234 aa  185  4e-46  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_2259  two component heavy metal response transcriptional regulator  47.96 
 
 
225 aa  185  5e-46  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_3055  two component transcriptional regulator, winged helix family  43.75 
 
 
227 aa  185  5e-46  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.703147  hitchhiker  0.000223036 
 
 
-
 
NC_008554  Sfum_2007  two component transcriptional regulator  48.18 
 
 
223 aa  185  5e-46  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_3265  two component transcriptional regulator, winged helix family  46.82 
 
 
245 aa  184  8e-46  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.45002  normal 
 
 
-
 
NC_013522  Taci_0717  two component transcriptional regulator, winged helix family  44.14 
 
 
226 aa  184  8e-46  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  hitchhiker  0.000154116  n/a   
 
 
-
 
NC_002939  GSU2946  DNA-binding heavy metal response regulator  46.33 
 
 
223 aa  184  9e-46  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_1324  response regulator receiver  48.18 
 
 
223 aa  184  1.0000000000000001e-45  Gordonia bronchialis DSM 43247  Bacteria  normal  0.88989  n/a   
 
 
-
 
NC_010676  Bphyt_4933  two component heavy metal response transcriptional regulator, winged helix family  45.54 
 
 
223 aa  184  1.0000000000000001e-45  Burkholderia phytofirmans PsJN  Bacteria  normal  0.461594  normal  0.344735 
 
 
-
 
NC_009487  SaurJH9_1476  two component transcriptional regulator  44.44 
 
 
219 aa  183  2.0000000000000003e-45  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_0801  two component transcriptional regulator  45.41 
 
 
221 aa  183  2.0000000000000003e-45  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.0203691 
 
 
-
 
NC_009632  SaurJH1_1505  response regulator receiver  44.44 
 
 
219 aa  183  2.0000000000000003e-45  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.404603  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2492  two component transcriptional regulator  45.66 
 
 
224 aa  183  2.0000000000000003e-45  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.22217  n/a   
 
 
-
 
NC_008699  Noca_1613  response regulator receiver  47.32 
 
 
225 aa  183  2.0000000000000003e-45  Nocardioides sp. JS614  Bacteria  normal  0.97266  n/a   
 
 
-
 
NC_013124  Afer_0703  two component transcriptional regulator, winged helix family  42.48 
 
 
236 aa  182  3e-45  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_5311  two component transcriptional regulator  44.63 
 
 
246 aa  182  3e-45  Frankia sp. EAN1pec  Bacteria  normal  0.554395  normal  0.310406 
 
 
-
 
NC_010003  Pmob_0851  two component transcriptional regulator  42.47 
 
 
222 aa  182  3e-45  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A0699  two component transcriptional regulator  47.27 
 
 
220 aa  182  4.0000000000000006e-45  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_3444  two component transcriptional regulator  45 
 
 
220 aa  182  4.0000000000000006e-45  Sphingomonas wittichii RW1  Bacteria  normal  0.112849  normal  0.384843 
 
 
-
 
NC_008781  Pnap_3105  two component transcriptional regulator  50 
 
 
219 aa  182  5.0000000000000004e-45  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.136173  normal 
 
 
-
 
NC_003909  BCE_2675  DNA-binding response regulator  46.12 
 
 
224 aa  181  6e-45  Bacillus cereus ATCC 10987  Bacteria  normal  0.0180828  n/a   
 
 
-
 
NC_010681  Bphyt_3267  two component transcriptional regulator, winged helix family  47.27 
 
 
220 aa  181  7e-45  Burkholderia phytofirmans PsJN  Bacteria  normal  0.387524  normal 
 
 
-
 
NC_010184  BcerKBAB4_2944  two component transcriptional regulator  41.82 
 
 
224 aa  181  8.000000000000001e-45  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0958095  n/a   
 
 
-
 
NC_008578  Acel_1595  two component transcriptional regulator  48.65 
 
 
227 aa  181  8.000000000000001e-45  Acidothermus cellulolyticus 11B  Bacteria  normal  0.526383  normal  0.570373 
 
 
-
 
NC_009380  Strop_1594  response regulator receiver  51.39 
 
 
219 aa  180  1e-44  Salinispora tropica CNB-440  Bacteria  normal  0.349405  normal 
 
 
-
 
NC_013205  Aaci_2264  two component transcriptional regulator, winged helix family  47.95 
 
 
231 aa  181  1e-44  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  hitchhiker  0.00910741  n/a   
 
 
-
 
NC_011772  BCG9842_B2033  DNA-binding response regulator  41.36 
 
 
224 aa  180  1e-44  Bacillus cereus G9842  Bacteria  normal  0.725953  normal 
 
 
-
 
NC_011726  PCC8801_3524  two component transcriptional regulator, winged helix family  45.16 
 
 
223 aa  180  1e-44  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_2593  two component transcriptional regulator, winged helix family  45.16 
 
 
223 aa  180  2e-44  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_3453  two component transcriptional regulator  41.36 
 
 
224 aa  179  2e-44  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A3221  DNA-binding response regulator  41.36 
 
 
224 aa  179  2e-44  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_2066  two component transcriptional regulator  44.55 
 
 
225 aa  179  2e-44  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_0513  two component transcriptional regulator, winged helix family  47.25 
 
 
228 aa  179  2e-44  Rhodothermus marinus DSM 4252  Bacteria  normal  0.985837  n/a   
 
 
-
 
NC_008025  Dgeo_2318  two component transcriptional regulator  48.17 
 
 
225 aa  179  2e-44  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.642935  normal 
 
 
-
 
NC_010571  Oter_1727  two component transcriptional regulator  45.5 
 
 
228 aa  180  2e-44  Opitutus terrae PB90-1  Bacteria  normal  0.284746  normal 
 
 
-
 
NC_011725  BCB4264_A2673  DNA-binding response regulator  44.75 
 
 
224 aa  180  2e-44  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_0523  two component transcriptional regulator, winged helix family  46.54 
 
 
224 aa  179  2e-44  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008609  Ppro_2957  two component transcriptional regulator  43.05 
 
 
223 aa  180  2e-44  Pelobacter propionicus DSM 2379  Bacteria  unclonable  0.000000000406961  n/a   
 
 
-
 
NC_013947  Snas_0721  two component transcriptional regulator, winged helix family  49.55 
 
 
233 aa  180  2e-44  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.811558  normal 
 
 
-
 
NC_014158  Tpau_3286  two component transcriptional regulator, winged helix family  47.96 
 
 
228 aa  180  2e-44  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.167791  n/a   
 
 
-
 
NC_011830  Dhaf_1005  two component transcriptional regulator, winged helix family  44.29 
 
 
227 aa  180  2e-44  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000255449  n/a   
 
 
-
 
NC_009831  Ssed_4392  two component transcriptional regulator  42.86 
 
 
225 aa  179  2e-44  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.0025821  decreased coverage  0.00000564878 
 
 
-
 
NC_008391  Bamb_5186  two component heavy metal response transcriptional regulator  43.24 
 
 
223 aa  179  2.9999999999999997e-44  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
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