More than 300 homologs were found in PanDaTox collection
for query gene Ndas_4009 on replicon NC_014210
Organism: Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_014210  Ndas_4009  two component transcriptional regulator, LuxR family  100 
 
 
231 aa  459  9.999999999999999e-129  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0669057  normal  0.324745 
 
 
-
 
NC_012803  Mlut_21900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  59.73 
 
 
230 aa  244  6e-64  Micrococcus luteus NCTC 2665  Bacteria  hitchhiker  0.00486265  n/a   
 
 
-
 
NC_013169  Ksed_23660  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  52.49 
 
 
222 aa  235  4e-61  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_2391  two component transcriptional regulator, LuxR family  57.58 
 
 
239 aa  234  7e-61  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0696687  hitchhiker  0.00128542 
 
 
-
 
NC_009664  Krad_1350  two component transcriptional regulator, LuxR family  56.56 
 
 
249 aa  231  6e-60  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.691965  normal 
 
 
-
 
NC_011886  Achl_2270  two component transcriptional regulator, LuxR family  54.55 
 
 
242 aa  228  8e-59  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000113212 
 
 
-
 
NC_012669  Bcav_2822  two component transcriptional regulator, LuxR family  54.87 
 
 
231 aa  224  1e-57  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal 
 
 
-
 
NC_013530  Xcel_2601  two component transcriptional regulator, LuxR family  56.25 
 
 
234 aa  219  1.9999999999999999e-56  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.1212  n/a   
 
 
-
 
NC_013521  Sked_08490  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  53.98 
 
 
236 aa  213  1.9999999999999998e-54  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.199706  normal  0.526513 
 
 
-
 
NC_013721  HMPREF0424_0644  response regulator receiver domain protein  42.23 
 
 
261 aa  209  3e-53  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.520039 
 
 
-
 
NC_013739  Cwoe_3768  two component transcriptional regulator, LuxR family  54.3 
 
 
223 aa  207  9e-53  Conexibacter woesei DSM 14684  Bacteria  normal  0.28303  normal  0.763501 
 
 
-
 
NC_013174  Jden_1873  two component transcriptional regulator, LuxR family  50.22 
 
 
233 aa  206  2e-52  Jonesia denitrificans DSM 20603  Bacteria  normal  0.145213  normal  0.385799 
 
 
-
 
NC_010816  BLD_0671  putative response regulator  47.11 
 
 
248 aa  204  8e-52  Bifidobacterium longum DJO10A  Bacteria  normal  0.248332  n/a   
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  51.57 
 
 
226 aa  203  1e-51  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_013131  Caci_8412  two component transcriptional regulator, LuxR family  51.8 
 
 
239 aa  202  4e-51  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  51.57 
 
 
226 aa  201  6e-51  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  50 
 
 
226 aa  200  9.999999999999999e-51  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_013172  Bfae_20460  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  50.45 
 
 
229 aa  201  9.999999999999999e-51  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0212792  n/a   
 
 
-
 
NC_013595  Sros_4115  response regulator receiver protein  52.68 
 
 
216 aa  199  3e-50  Streptosporangium roseum DSM 43021  Bacteria  normal  0.071707  normal  0.0608108 
 
 
-
 
NC_014165  Tbis_0951  LuxR family two component transcriptional regulator  49.33 
 
 
221 aa  197  7.999999999999999e-50  Thermobispora bispora DSM 43833  Bacteria  normal  0.392411  normal  0.343359 
 
 
-
 
NC_013595  Sros_7301  response regulator receiver protein  50 
 
 
220 aa  196  2.0000000000000003e-49  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3185  two component LuxR family transcriptional regulator  49.78 
 
 
223 aa  196  2.0000000000000003e-49  Frankia sp. EAN1pec  Bacteria  normal  0.704721  normal 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  48.89 
 
 
227 aa  196  2.0000000000000003e-49  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  50.68 
 
 
220 aa  194  7e-49  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_012669  Bcav_1049  two component transcriptional regulator, LuxR family  51.56 
 
 
222 aa  192  4e-48  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.661499  normal  0.245945 
 
 
-
 
NC_013595  Sros_1746  response regulator receiver protein  50.23 
 
 
217 aa  192  5e-48  Streptosporangium roseum DSM 43021  Bacteria  normal  0.59096  normal  0.157721 
 
 
-
 
NC_013510  Tcur_4491  two component transcriptional regulator, LuxR family  50.88 
 
 
225 aa  191  8e-48  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_1981  two component transcriptional regulator, LuxR family  47.98 
 
 
230 aa  191  9e-48  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_4577  response regulator receiver protein  45.29 
 
 
223 aa  189  2e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.172592 
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  48.2 
 
 
218 aa  189  4e-47  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  47.96 
 
 
224 aa  187  8e-47  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_013595  Sros_3251  response regulator receiver protein  48.88 
 
 
221 aa  187  2e-46  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0793449  normal 
 
 
-
 
NC_013131  Caci_0956  two component transcriptional regulator, LuxR family  47.56 
 
 
221 aa  185  4e-46  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0236  two component transcriptional regulator, LuxR family  46.22 
 
 
224 aa  185  4e-46  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5619  response regulator receiver protein  47.35 
 
 
226 aa  184  1.0000000000000001e-45  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0556461  normal  0.802866 
 
 
-
 
NC_013441  Gbro_4119  response regulator receiver  46.85 
 
 
230 aa  184  1.0000000000000001e-45  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_2015  two component transcriptional regulator, LuxR family  46.02 
 
 
232 aa  183  2.0000000000000003e-45  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.706703  n/a   
 
 
-
 
NC_008541  Arth_4134  two component LuxR family transcriptional regulator  46.22 
 
 
250 aa  183  2.0000000000000003e-45  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_0647  two component transcriptional regulator, LuxR family  46.4 
 
 
212 aa  183  2.0000000000000003e-45  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.518884  n/a   
 
 
-
 
NC_013169  Ksed_04500  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  47.06 
 
 
244 aa  183  2.0000000000000003e-45  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0199  response regulator receiver protein  45.62 
 
 
213 aa  182  4.0000000000000006e-45  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  47.11 
 
 
239 aa  181  8.000000000000001e-45  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  46.49 
 
 
226 aa  181  8.000000000000001e-45  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_013093  Amir_4051  two component transcriptional regulator, LuxR family  47.96 
 
 
225 aa  180  1e-44  Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.00308286  n/a   
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  47.37 
 
 
229 aa  181  1e-44  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  47.3 
 
 
215 aa  179  2e-44  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  48.2 
 
 
225 aa  179  2.9999999999999997e-44  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  45.74 
 
 
225 aa  179  2.9999999999999997e-44  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  47.37 
 
 
225 aa  179  4e-44  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.114252 
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  45.54 
 
 
234 aa  179  4e-44  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  45.98 
 
 
222 aa  179  4e-44  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_1477  two component transcriptional regulator, LuxR family  48.89 
 
 
234 aa  178  5.999999999999999e-44  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.594471  normal 
 
 
-
 
NC_013131  Caci_7160  two component transcriptional regulator, LuxR family  47.09 
 
 
224 aa  178  5.999999999999999e-44  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_4575  two component transcriptional regulator, LuxR family  48.65 
 
 
224 aa  177  9e-44  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.703378  normal  0.112036 
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  46.29 
 
 
224 aa  176  2e-43  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_013131  Caci_8900  two component transcriptional regulator, LuxR family  48.2 
 
 
221 aa  176  2e-43  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.967084  normal 
 
 
-
 
NC_014158  Tpau_2872  two component transcriptional regulator, LuxR family  44.8 
 
 
218 aa  176  2e-43  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_4860  two component LuxR family transcriptional regulator  45.81 
 
 
219 aa  176  2e-43  Salinispora arenicola CNS-205  Bacteria  normal  0.452521  normal  0.0798716 
 
 
-
 
NC_013947  Snas_2469  two component transcriptional regulator, LuxR family  45.74 
 
 
214 aa  176  2e-43  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.126163  normal 
 
 
-
 
NC_013595  Sros_3244  response regulator receiver protein  46.85 
 
 
218 aa  176  2e-43  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000568428  normal  0.332742 
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  45.29 
 
 
225 aa  176  3e-43  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137578 
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  46.64 
 
 
228 aa  176  3e-43  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  46.46 
 
 
223 aa  176  3e-43  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0556432 
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  48.42 
 
 
225 aa  176  3e-43  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal 
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  47.95 
 
 
222 aa  176  3e-43  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal 
 
 
-
 
NC_014210  Ndas_4652  two component transcriptional regulator, LuxR family  46.64 
 
 
219 aa  175  5e-43  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0949639  normal 
 
 
-
 
NC_013947  Snas_4946  two component transcriptional regulator, LuxR family  45.33 
 
 
224 aa  175  5e-43  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.13115  normal 
 
 
-
 
NC_013947  Snas_3359  two component transcriptional regulator, LuxR family  45.37 
 
 
219 aa  175  6e-43  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0172663  normal 
 
 
-
 
NC_013521  Sked_36930  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  45.5 
 
 
222 aa  175  6e-43  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.811978 
 
 
-
 
NC_014210  Ndas_2087  two component transcriptional regulator, LuxR family  45.33 
 
 
247 aa  175  6e-43  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.73112  normal 
 
 
-
 
NC_013093  Amir_6405  two component transcriptional regulator, LuxR family  46.09 
 
 
225 aa  174  7e-43  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  46.43 
 
 
215 aa  175  7e-43  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_009921  Franean1_7161  two component LuxR family transcriptional regulator  46.7 
 
 
225 aa  175  7e-43  Frankia sp. EAN1pec  Bacteria  normal  0.0588186  normal  0.118819 
 
 
-
 
NC_013595  Sros_4468  response regulator receiver protein  45.41 
 
 
219 aa  174  8e-43  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0876299  normal  0.32237 
 
 
-
 
NC_013739  Cwoe_0549  two component transcriptional regulator, LuxR family  45.7 
 
 
220 aa  174  8e-43  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2557  two component transcriptional regulator, LuxR family  45.13 
 
 
224 aa  174  9.999999999999999e-43  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.231398  normal  0.0978001 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  43.11 
 
 
218 aa  174  9.999999999999999e-43  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_009380  Strop_2458  response regulator receiver  45.37 
 
 
220 aa  174  9.999999999999999e-43  Salinispora tropica CNB-440  Bacteria  normal  0.0554598  normal 
 
 
-
 
NC_009953  Sare_1782  two component LuxR family transcriptional regulator  47.77 
 
 
230 aa  174  9.999999999999999e-43  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0025253 
 
 
-
 
NC_014210  Ndas_3601  two component transcriptional regulator, LuxR family  46.43 
 
 
222 aa  173  1.9999999999999998e-42  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.324048  normal 
 
 
-
 
NC_013172  Bfae_25060  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  44.34 
 
 
222 aa  173  1.9999999999999998e-42  Brachybacterium faecium DSM 4810  Bacteria  normal  0.444591  n/a   
 
 
-
 
NC_009921  Franean1_7117  two component LuxR family transcriptional regulator  45.74 
 
 
214 aa  173  1.9999999999999998e-42  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2232  two component transcriptional regulator, LuxR family  47.06 
 
 
302 aa  173  1.9999999999999998e-42  Actinosynnema mirum DSM 43827  Bacteria  normal  0.501029  n/a   
 
 
-
 
NC_014151  Cfla_0857  two component transcriptional regulator, LuxR family  46.64 
 
 
219 aa  172  2.9999999999999996e-42  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0762303  normal 
 
 
-
 
NC_013093  Amir_2737  two component transcriptional regulator, LuxR family  45.85 
 
 
227 aa  172  2.9999999999999996e-42  Actinosynnema mirum DSM 43827  Bacteria  normal  0.418014  n/a   
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  47.27 
 
 
220 aa  172  2.9999999999999996e-42  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_011886  Achl_3912  two component transcriptional regulator, LuxR family  44.59 
 
 
230 aa  173  2.9999999999999996e-42  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  45.33 
 
 
221 aa  172  3.9999999999999995e-42  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
NC_013595  Sros_9329  response regulator receiver protein  44.39 
 
 
217 aa  172  3.9999999999999995e-42  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_4217  two component transcriptional regulator, LuxR family  46.64 
 
 
225 aa  172  5e-42  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000816589  normal  0.757819 
 
 
-
 
NC_013947  Snas_1740  two component transcriptional regulator, LuxR family  45.29 
 
 
228 aa  172  5e-42  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_4684  two component LuxR family transcriptional regulator  44.49 
 
 
223 aa  172  5e-42  Frankia sp. EAN1pec  Bacteria  normal  0.51425  normal 
 
 
-
 
NC_013131  Caci_6529  two component transcriptional regulator, LuxR family  44.8 
 
 
224 aa  172  5.999999999999999e-42  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.270807  normal  0.114568 
 
 
-
 
NC_009380  Strop_1796  response regulator receiver  45.98 
 
 
230 aa  171  5.999999999999999e-42  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_0278  two component transcriptional regulator, LuxR family  44.89 
 
 
225 aa  172  5.999999999999999e-42  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.000789071 
 
 
-
 
NC_008697  Noca_4896  response regulator receiver  45.95 
 
 
215 aa  171  6.999999999999999e-42  Nocardioides sp. JS614  Bacteria  normal  0.446448  normal  0.220667 
 
 
-
 
NC_013131  Caci_3748  two component transcriptional regulator, LuxR family  45.25 
 
 
236 aa  171  6.999999999999999e-42  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_6705  two component transcriptional regulator, LuxR family  42.57 
 
 
258 aa  171  6.999999999999999e-42  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.318103  normal  0.0731204 
 
 
-
 
NC_013131  Caci_7812  two component transcriptional regulator, LuxR family  43.42 
 
 
227 aa  171  7.999999999999999e-42  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3390  two component LuxR family transcriptional regulator  45.29 
 
 
226 aa  171  1e-41  Frankia sp. EAN1pec  Bacteria  normal  0.0389848  normal 
 
 
-
 
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