More than 300 homologs were found in PanDaTox collection
for query gene Namu_1992 on replicon NC_013235
Organism: Nakamurella multipartita DSM 44233



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013235  Namu_1992  response regulator receiver protein  100 
 
 
137 aa  267  4e-71  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00108622  normal  0.0685304 
 
 
-
 
NC_013235  Namu_2003  two component transcriptional regulator, LuxR family  69.92 
 
 
219 aa  179  1e-44  Nakamurella multipartita DSM 44233  Bacteria  normal  0.183245  hitchhiker  0.00373502 
 
 
-
 
NC_008146  Mmcs_1076  two component LuxR family transcriptional regulator  62.3 
 
 
228 aa  158  3e-38  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_1092  two component LuxR family transcriptional regulator  62.3 
 
 
228 aa  158  3e-38  Mycobacterium sp. KMS  Bacteria  normal  0.123414  normal  0.110897 
 
 
-
 
NC_009077  Mjls_1103  two component LuxR family transcriptional regulator  62.3 
 
 
228 aa  158  3e-38  Mycobacterium sp. JLS  Bacteria  normal  0.191898  normal 
 
 
-
 
NC_008726  Mvan_2548  two component LuxR family transcriptional regulator  60.98 
 
 
216 aa  155  1e-37  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.971783  normal 
 
 
-
 
NC_009338  Mflv_3847  two component LuxR family transcriptional regulator  60.16 
 
 
216 aa  154  5.0000000000000005e-37  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.118356  decreased coverage  0.00872558 
 
 
-
 
NC_014165  Tbis_3505  LuxR family two component transcriptional regulator  55.47 
 
 
213 aa  152  1e-36  Thermobispora bispora DSM 43833  Bacteria  normal  0.345096  normal 
 
 
-
 
NC_008726  Mvan_1427  two component LuxR family transcriptional regulator  62.5 
 
 
212 aa  152  2e-36  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_4126  two component LuxR family transcriptional regulator  60.83 
 
 
220 aa  150  5e-36  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4201  two component LuxR family transcriptional regulator  60.83 
 
 
215 aa  150  5e-36  Mycobacterium sp. KMS  Bacteria  normal  0.180608  normal 
 
 
-
 
NC_009077  Mjls_4357  two component LuxR family transcriptional regulator  60.83 
 
 
215 aa  150  5e-36  Mycobacterium sp. JLS  Bacteria  normal  normal  0.171113 
 
 
-
 
NC_009565  TBFG_13154  two component system transcriptional regulatory protein DevR  59.35 
 
 
217 aa  150  5.9999999999999996e-36  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2950  LuxR response regulator receiver  54.07 
 
 
221 aa  148  2e-35  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_0500  two component transcriptional regulator, LuxR family  54.47 
 
 
226 aa  146  9e-35  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3524  response regulator receiver protein  56.91 
 
 
214 aa  146  1.0000000000000001e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0390864  normal 
 
 
-
 
NC_014210  Ndas_4749  two component transcriptional regulator, LuxR family  56.67 
 
 
223 aa  144  6e-34  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_1910  two component transcriptional regulator, LuxR family  57.26 
 
 
218 aa  142  1e-33  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_22850  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  56.56 
 
 
239 aa  140  7e-33  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.711047 
 
 
-
 
NC_013530  Xcel_0190  two component transcriptional regulator, LuxR family  60.17 
 
 
219 aa  140  8e-33  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.146862  n/a   
 
 
-
 
NC_007777  Francci3_2258  two component LuxR family transcriptional regulator  53.6 
 
 
224 aa  137  4.999999999999999e-32  Frankia sp. CcI3  Bacteria  normal  0.124896  normal  0.0124728 
 
 
-
 
NC_009921  Franean1_2449  two component LuxR family transcriptional regulator  52.8 
 
 
211 aa  136  1e-31  Frankia sp. EAN1pec  Bacteria  normal  normal  0.265588 
 
 
-
 
NC_013131  Caci_0094  two component transcriptional regulator, LuxR family  56.78 
 
 
233 aa  135  1e-31  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0277195 
 
 
-
 
NC_007333  Tfu_3035  LuxR response regulator receiver  54.17 
 
 
223 aa  134  3.0000000000000003e-31  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_0518  two component LuxR family transcriptional regulator  60 
 
 
225 aa  133  7.000000000000001e-31  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.665179 
 
 
-
 
NC_009921  Franean1_4062  two component LuxR family transcriptional regulator  51.18 
 
 
216 aa  133  9.999999999999999e-31  Frankia sp. EAN1pec  Bacteria  normal  0.0448793  normal  0.300284 
 
 
-
 
NC_013124  Afer_1446  two component transcriptional regulator, LuxR family  54.69 
 
 
223 aa  132  9.999999999999999e-31  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_3253  two component LuxR family transcriptional regulator  50 
 
 
213 aa  132  1.9999999999999998e-30  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_2136  two component LuxR family transcriptional regulator  54.47 
 
 
254 aa  132  1.9999999999999998e-30  Arthrobacter sp. FB24  Bacteria  normal  0.0553154  n/a   
 
 
-
 
NC_009921  Franean1_6933  two component LuxR family transcriptional regulator  51.18 
 
 
244 aa  132  1.9999999999999998e-30  Frankia sp. EAN1pec  Bacteria  normal  normal  0.322421 
 
 
-
 
NC_013235  Namu_4738  two component transcriptional regulator, LuxR family  51.18 
 
 
233 aa  131  3e-30  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_0992  regulatory protein, LuxR  50.39 
 
 
218 aa  130  5e-30  Nocardioides sp. JS614  Bacteria  normal  0.850793  n/a   
 
 
-
 
NC_014158  Tpau_4145  two component transcriptional regulator, LuxR family  55.46 
 
 
216 aa  129  9e-30  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_3097  two component transcriptional regulator, LuxR family  53.33 
 
 
222 aa  129  1.0000000000000001e-29  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.472018  normal  0.507317 
 
 
-
 
NC_007777  Francci3_1487  two component LuxR family transcriptional regulator  51.56 
 
 
231 aa  129  2.0000000000000002e-29  Frankia sp. CcI3  Bacteria  normal  0.0122618  normal  0.753042 
 
 
-
 
NC_009921  Franean1_4979  two component LuxR family transcriptional regulator  52.8 
 
 
231 aa  128  3e-29  Frankia sp. EAN1pec  Bacteria  normal  0.889239  normal  0.507767 
 
 
-
 
NC_013757  Gobs_4820  two component transcriptional regulator, LuxR family  57.5 
 
 
218 aa  127  7.000000000000001e-29  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_2073  two component transcriptional regulator, LuxR family  54.17 
 
 
226 aa  125  1.0000000000000001e-28  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000000764485 
 
 
-
 
NC_009953  Sare_1528  two component LuxR family transcriptional regulator  48.44 
 
 
212 aa  123  8.000000000000001e-28  Salinispora arenicola CNS-205  Bacteria  normal  0.212037  hitchhiker  0.000165031 
 
 
-
 
NC_008699  Noca_0945  response regulator receiver  49.17 
 
 
216 aa  122  1e-27  Nocardioides sp. JS614  Bacteria  normal  0.0407172  n/a   
 
 
-
 
NC_009380  Strop_1577  response regulator receiver  47.66 
 
 
212 aa  122  2e-27  Salinispora tropica CNB-440  Bacteria  normal  normal  0.967001 
 
 
-
 
NC_013093  Amir_0097  two component transcriptional regulator, LuxR family  50 
 
 
209 aa  117  4.9999999999999996e-26  Actinosynnema mirum DSM 43827  Bacteria  normal  0.142871  n/a   
 
 
-
 
NC_009921  Franean1_1971  two component LuxR family transcriptional regulator  46.4 
 
 
216 aa  115  9.999999999999999e-26  Frankia sp. EAN1pec  Bacteria  normal  0.356635  normal  0.773651 
 
 
-
 
NC_013159  Svir_01100  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  49.21 
 
 
214 aa  108  2.0000000000000002e-23  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1611  two component transcriptional regulator, LuxR family  48.78 
 
 
208 aa  108  2.0000000000000002e-23  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.548364  normal 
 
 
-
 
NC_013093  Amir_6098  two component transcriptional regulator, LuxR family  48.78 
 
 
218 aa  107  7.000000000000001e-23  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_1701  response regulator receiver protein  47.76 
 
 
224 aa  105  3e-22  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.0169479 
 
 
-
 
NC_008541  Arth_3459  two component LuxR family transcriptional regulator  44.8 
 
 
212 aa  103  8e-22  Arthrobacter sp. FB24  Bacteria  normal  0.775478  n/a   
 
 
-
 
NC_013441  Gbro_2140  response regulator receiver  52.99 
 
 
218 aa  103  9e-22  Gordonia bronchialis DSM 43247  Bacteria  normal  0.95288  n/a   
 
 
-
 
NC_013521  Sked_11330  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  47.11 
 
 
224 aa  102  1e-21  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.0103975 
 
 
-
 
NC_013174  Jden_1659  two component transcriptional regulator, LuxR family  47.46 
 
 
207 aa  100  9e-21  Jonesia denitrificans DSM 20603  Bacteria  normal  0.319135  normal  0.0403017 
 
 
-
 
NC_013172  Bfae_18340  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  43.8 
 
 
209 aa  98.2  3e-20  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_2290  two component transcriptional regulator, LuxR family  44.54 
 
 
208 aa  96.3  1e-19  Cellulomonas flavigena DSM 20109  Bacteria  decreased coverage  0.00802134  hitchhiker  0.000628596 
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  39.37 
 
 
242 aa  92.4  2e-18  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_013131  Caci_7589  two component transcriptional regulator, LuxR family  37.6 
 
 
225 aa  92  3e-18  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.438424  normal  0.37363 
 
 
-
 
NC_011831  Cagg_1769  two component transcriptional regulator, LuxR family  40.16 
 
 
219 aa  91.7  3e-18  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.221401  normal  0.0578747 
 
 
-
 
NC_011725  BCB4264_A5535  DNA-binding response regulator  35.16 
 
 
215 aa  90.9  6e-18  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_3810  two component transcriptional regulator, LuxR family  38.64 
 
 
236 aa  90.1  1e-17  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.225059  normal  0.0261757 
 
 
-
 
NC_011772  BCG9842_B5417  DNA-binding response regulator  35.16 
 
 
215 aa  89.4  2e-17  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_5205  two component LuxR family transcriptional regulator  34.38 
 
 
215 aa  89  2e-17  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  40.88 
 
 
228 aa  89  2e-17  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  36.72 
 
 
222 aa  88.6  3e-17  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal 
 
 
-
 
NC_011658  BCAH187_A5591  DNA-binding response regulator  34.38 
 
 
215 aa  88.2  3e-17  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  36.72 
 
 
223 aa  87.8  4e-17  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0556432 
 
 
-
 
NC_012918  GM21_0467  two component transcriptional regulator, LuxR family  37.9 
 
 
216 aa  87.4  6e-17  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000507383 
 
 
-
 
NC_005945  BAS5263  DNA-binding response regulator  34.38 
 
 
215 aa  87  7e-17  Bacillus anthracis str. Sterne  Bacteria  normal  0.24037  n/a   
 
 
-
 
NC_005957  BT9727_5091  response regulator  34.38 
 
 
215 aa  87  7e-17  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0451  two component transcriptional regulator, LuxR family  37.9 
 
 
216 aa  87  7e-17  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK5108  response regulator  34.38 
 
 
215 aa  87  7e-17  Bacillus cereus E33L  Bacteria  decreased coverage  0.00235048  n/a   
 
 
-
 
NC_007530  GBAA_5661  DNA-binding response regulator  34.38 
 
 
215 aa  87  7e-17  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5506  DNA-binding response regulator  34.38 
 
 
215 aa  87  7e-17  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_003909  BCE_5540  DNA-binding response regulator  34.38 
 
 
215 aa  87  8e-17  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_3654  two component LuxR family transcriptional regulator  36.67 
 
 
221 aa  86.7  1e-16  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.0000210563  n/a   
 
 
-
 
NC_011992  Dtpsy_0424  two component transcriptional regulator, LuxR family  40.8 
 
 
223 aa  86.3  1e-16  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_0973  two component LuxR family transcriptional regulator  44.66 
 
 
216 aa  86.3  1e-16  Acidothermus cellulolyticus 11B  Bacteria  normal  0.255067  normal  0.404517 
 
 
-
 
NC_008782  Ajs_0433  two component LuxR family transcriptional regulator  40.8 
 
 
223 aa  86.3  1e-16  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_2402  LuxR family DNA-binding response regulator  36.36 
 
 
209 aa  85.5  2e-16  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.0000000000000137953  n/a   
 
 
-
 
NC_009943  Dole_0029  two component LuxR family transcriptional regulator  36.72 
 
 
214 aa  85.9  2e-16  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.317943  n/a   
 
 
-
 
NC_007298  Daro_0834  LuxR response regulator receiver  36.89 
 
 
221 aa  85.5  2e-16  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.0179337 
 
 
-
 
NC_009972  Haur_4485  two component LuxR family transcriptional regulator  36.89 
 
 
213 aa  85.9  2e-16  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.310872  n/a   
 
 
-
 
NC_007974  Rmet_4516  two component LuxR family transcriptional regulator  39.06 
 
 
214 aa  85.9  2e-16  Cupriavidus metallidurans CH34  Bacteria  normal  0.0463384  normal  0.0270495 
 
 
-
 
NC_010159  YpAngola_A1688  LuxR family DNA-binding response regulator  36.36 
 
 
209 aa  85.5  2e-16  Yersinia pestis Angola  Bacteria  hitchhiker  0.000000202542  normal  0.0533619 
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  37.01 
 
 
213 aa  85.5  2e-16  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_2499  two component LuxR family transcriptional regulator  36.36 
 
 
209 aa  85.5  2e-16  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.449467  n/a   
 
 
-
 
NC_011831  Cagg_2804  two component transcriptional regulator, LuxR family  36.03 
 
 
216 aa  85.1  3e-16  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.995251  normal  0.311692 
 
 
-
 
NC_009973  Haur_5199  two component LuxR family transcriptional regulator  36.13 
 
 
225 aa  85.1  3e-16  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A4347  two component LuxR family transcriptional regulator  40.77 
 
 
218 aa  84.3  4e-16  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.705126 
 
 
-
 
NC_014210  Ndas_4080  two component transcriptional regulator, LuxR family  36.29 
 
 
241 aa  84.7  4e-16  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.858367 
 
 
-
 
NC_014210  Ndas_0346  two component transcriptional regulator, LuxR family  40.65 
 
 
210 aa  84.7  4e-16  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0205277  normal  0.823307 
 
 
-
 
NC_013172  Bfae_03380  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  42.15 
 
 
153 aa  84.3  5e-16  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_2943  two component LuxR family transcriptional regulator  36.96 
 
 
215 aa  84.3  5e-16  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1230  two component transcriptional regulator, LuxR family  37.29 
 
 
215 aa  84  6e-16  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_2962  response regulator receiver  31.51 
 
 
206 aa  83.6  8e-16  Pedobacter heparinus DSM 2366  Bacteria  normal  0.117851  normal 
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  33.08 
 
 
219 aa  83.6  8e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal 
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  38.02 
 
 
231 aa  83.6  8e-16  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_0622  transcriptional regulator UhpA  36.89 
 
 
208 aa  83.6  9e-16  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_1938  two component LuxR family transcriptional regulator  30.15 
 
 
209 aa  82.8  0.000000000000001  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_1972  response regulator receiver  30.15 
 
 
209 aa  82.8  0.000000000000001  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1400  two component signal transduction response regulator  31.75 
 
 
214 aa  82.8  0.000000000000001  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_5474  two component LuxR family transcriptional regulator  39.5 
 
 
212 aa  83.2  0.000000000000001  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.344108  normal  0.73382 
 
 
-
 
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