145 homologs were found in PanDaTox collection
for query gene Msil_1371 on replicon NC_011666
Organism: Methylocella silvestris BL2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011666  Msil_1371  transcriptional regulator, CarD family  100 
 
 
456 aa  886    Methylocella silvestris BL2  Bacteria  n/a    normal  0.401785 
 
 
-
 
NC_010581  Bind_3138  CarD family transcriptional regulator  80.41 
 
 
368 aa  318  1e-85  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_0412  transcription factor CarD  71.5 
 
 
283 aa  293  5e-78  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.595911  normal 
 
 
-
 
NC_007925  RPC_0548  CarD family transcriptional regulator  71.05 
 
 
365 aa  290  5.0000000000000004e-77  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.300109  normal  0.699777 
 
 
-
 
NC_007958  RPD_0278  transcription factor CarD  72.47 
 
 
432 aa  288  1e-76  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.197745 
 
 
-
 
NC_009720  Xaut_0187  CarD family transcriptional regulator  71.96 
 
 
206 aa  286  4e-76  Xanthobacter autotrophicus Py2  Bacteria  normal  0.160759  normal 
 
 
-
 
NC_007964  Nham_0507  CarD family transcriptional regulator  73.18 
 
 
259 aa  286  5e-76  Nitrobacter hamburgensis X14  Bacteria  normal  0.0122387  n/a   
 
 
-
 
NC_011004  Rpal_0489  transcriptional regulator, CarD family  73.14 
 
 
278 aa  282  8.000000000000001e-75  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_7543  CarD family transcriptional regulator  73.26 
 
 
278 aa  280  3e-74  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.330727  normal 
 
 
-
 
NC_008254  Meso_3379  CarD family transcriptional regulator  70.68 
 
 
190 aa  279  8e-74  Chelativorans sp. BNC1  Bacteria  decreased coverage  0.0000000818177  n/a   
 
 
 
NC_009636  Smed_3112  CarD family transcriptional regulator  70.43 
 
 
189 aa  271  2e-71  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.0000522164  normal 
 
 
-
 
NC_010511  M446_4805  CarD family transcriptional regulator  73.1 
 
 
197 aa  270  4e-71  Methylobacterium sp. 4-46  Bacteria  normal  0.0268969  hitchhiker  0.000256244 
 
 
-
 
NC_004310  BR1766  transcriptional regulator, putative  72.78 
 
 
191 aa  269  7e-71  Brucella suis 1330  Bacteria  hitchhiker  0.000100794  n/a   
 
 
-
 
NC_009505  BOV_1702  putative transcriptional regulator  72.78 
 
 
191 aa  269  7e-71  Brucella ovis ATCC 25840  Bacteria  unclonable  0.00000176532  n/a   
 
 
-
 
NC_011894  Mnod_1718  transcriptional regulator, CarD family  71.59 
 
 
197 aa  269  8e-71  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_4337  transcriptional regulator, CarD family  72 
 
 
198 aa  268  1e-70  Methylobacterium populi BJ001  Bacteria  normal  0.139184  normal  0.529688 
 
 
-
 
NC_011757  Mchl_4190  transcriptional regulator, CarD family  73.94 
 
 
196 aa  266  7e-70  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.627659  normal  0.224383 
 
 
-
 
NC_010172  Mext_3880  transcription factor CarD  73.33 
 
 
196 aa  265  1e-69  Methylobacterium extorquens PA1  Bacteria  normal  0.260556  normal  0.0799721 
 
 
-
 
NC_011369  Rleg2_3814  transcriptional regulator, CarD family  69.44 
 
 
190 aa  265  1e-69  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_4143  transcriptional regulator, CarD family  69.44 
 
 
190 aa  265  1e-69  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0239678  normal  0.0810654 
 
 
-
 
NC_010505  Mrad2831_3708  CarD family transcriptional regulator  73.33 
 
 
201 aa  264  2e-69  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.378672 
 
 
-
 
NC_009667  Oant_1134  CarD family transcriptional regulator  74.1 
 
 
193 aa  264  3e-69  Ochrobactrum anthropi ATCC 49188  Bacteria  hitchhiker  0.000250032  n/a   
 
 
-
 
NC_011989  Avi_4352  transcriptional regulator CarD family  68.28 
 
 
223 aa  261  2e-68  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_1694  CarD family transcriptional regulator  72.5 
 
 
350 aa  249  7e-65  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.335809  normal  0.132221 
 
 
-
 
NC_008783  BARBAKC583_0123  CarD family transcriptional regulator  63.79 
 
 
192 aa  237  3e-61  Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_2425  CarD family transcriptional regulator  69.23 
 
 
169 aa  234  2.0000000000000002e-60  Rhodobacter sphaeroides 2.4.1  Bacteria  unclonable  0.0000259686  n/a   
 
 
-
 
NC_009049  Rsph17029_1089  CarD family transcriptional regulator  69.23 
 
 
169 aa  234  2.0000000000000002e-60  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0349811  normal 
 
 
-
 
NC_009428  Rsph17025_1557  CarD family transcriptional regulator  69.23 
 
 
169 aa  234  2.0000000000000002e-60  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0486007  normal  0.568097 
 
 
-
 
NC_009952  Dshi_0786  transcriptional regulator  69.87 
 
 
170 aa  234  2.0000000000000002e-60  Dinoroseobacter shibae DFL 12  Bacteria  decreased coverage  0.000100342  normal  0.0526342 
 
 
-
 
NC_008686  Pden_1825  CarD family transcriptional regulator  64.42 
 
 
169 aa  230  4e-59  Paracoccus denitrificans PD1222  Bacteria  unclonable  0.00000000000495809  normal  0.361852 
 
 
-
 
NC_007802  Jann_3308  CarD family transcriptional regulator  71.72 
 
 
172 aa  229  7e-59  Jannaschia sp. CCS1  Bacteria  decreased coverage  0.0000000178714  normal  0.0560372 
 
 
-
 
NC_008044  TM1040_0576  CarD family transcriptional regulator  64.6 
 
 
169 aa  226  8e-58  Ruegeria sp. TM1040  Bacteria  unclonable  0.0000000000504519  unclonable  0.0000000218406 
 
 
-
 
NC_010338  Caul_4112  CarD family transcriptional regulator  62.03 
 
 
170 aa  214  1.9999999999999998e-54  Caulobacter sp. K31  Bacteria  hitchhiker  0.00258914  normal  0.616295 
 
 
-
 
NC_008347  Mmar10_2296  CarD family transcriptional regulator  58.86 
 
 
169 aa  206  9e-52  Maricaulis maris MCS10  Bacteria  decreased coverage  0.0000229013  normal  0.715869 
 
 
-
 
NC_007794  Saro_0124  CarD family transcriptional regulator  58.23 
 
 
174 aa  203  5e-51  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_3537  CarD family transcriptional regulator  57.59 
 
 
172 aa  194  3e-48  Sphingomonas wittichii RW1  Bacteria  normal  0.92305  normal  0.183465 
 
 
-
 
NC_007643  Rru_A0079  CarD family transcriptional regulator  52.8 
 
 
165 aa  187  2e-46  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_0247  CarD family transcriptional regulator  57.04 
 
 
175 aa  187  4e-46  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.246568 
 
 
-
 
NC_009484  Acry_3091  CarD family transcriptional regulator  55.26 
 
 
266 aa  181  2e-44  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_0077  transcriptional regulator, CarD family  42.04 
 
 
196 aa  133  6e-30  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.449378  hitchhiker  0.00491109 
 
 
-
 
NC_007498  Pcar_0104  putative transcriptional regulator  39.57 
 
 
161 aa  102  1e-20  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3655  CarD family transcriptional regulator  32.91 
 
 
159 aa  98.2  3e-19  Syntrophobacter fumaroxidans MPOB  Bacteria  unclonable  0.000000563805  normal 
 
 
-
 
NC_007760  Adeh_1271  CarD family transcriptional regulator  36.43 
 
 
171 aa  97.4  5e-19  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.0355661  n/a   
 
 
-
 
NC_008751  Dvul_1561  CarD family transcriptional regulator  35.62 
 
 
171 aa  97.4  5e-19  Desulfovibrio vulgaris DP4  Bacteria  normal  0.0294353  normal 
 
 
-
 
NC_011891  A2cp1_2685  transcriptional regulator, CarD family  36.43 
 
 
171 aa  97.4  5e-19  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  decreased coverage  0.000114953  n/a   
 
 
-
 
NC_009675  Anae109_2498  CarD family transcriptional regulator  34.9 
 
 
171 aa  97.4  5e-19  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.860997  hitchhiker  0.00028149 
 
 
-
 
NC_011145  AnaeK_2592  transcriptional regulator, CarD family  36.43 
 
 
171 aa  97.4  5e-19  Anaeromyxobacter sp. K  Bacteria  normal  0.0112448  n/a   
 
 
-
 
NC_009943  Dole_2821  CarD family transcriptional regulator  28.99 
 
 
188 aa  93.6  7e-18  Desulfococcus oleovorans Hxd3  Bacteria  decreased coverage  0.000000000911518  n/a   
 
 
-
 
NC_009253  Dred_0185  CarD family transcriptional regulator  35.14 
 
 
158 aa  89.4  1e-16  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0164199  n/a   
 
 
-
 
NC_007519  Dde_2129  CarD family transcriptional regulator  32.14 
 
 
171 aa  84.7  0.000000000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00000417327  n/a   
 
 
-
 
NC_011883  Ddes_1455  transcriptional regulator, CarD family  31.76 
 
 
171 aa  83.2  0.00000000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  hitchhiker  0.000871292  n/a   
 
 
-
 
NC_013173  Dbac_0676  transcriptional regulator, CarD family  32.69 
 
 
176 aa  82  0.00000000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  hitchhiker  0.000000026469  n/a   
 
 
-
 
NC_013223  Dret_0842  transcriptional regulator, CarD family  31.43 
 
 
174 aa  82.4  0.00000000000002  Desulfohalobium retbaense DSM 5692  Bacteria  hitchhiker  0.000000502927  normal  0.471539 
 
 
-
 
NC_011769  DvMF_0490  transcriptional regulator, CarD family  30.63 
 
 
171 aa  82.4  0.00000000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    hitchhiker  0.00257809 
 
 
-
 
NC_013440  Hoch_4522  transcriptional regulator, CarD family  31.97 
 
 
162 aa  81.3  0.00000000000003  Haliangium ochraceum DSM 14365  Bacteria  normal  0.76792  normal 
 
 
-
 
NC_011830  Dhaf_0392  transcriptional regulator, CarD family  30.13 
 
 
158 aa  77  0.0000000000006  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.0000000000000362697  n/a   
 
 
-
 
NC_010718  Nther_0164  transcriptional regulator, CarD family  29.49 
 
 
161 aa  76.6  0.0000000000009  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.475576  normal 
 
 
-
 
NC_003909  BCE_3676  CarD family transcriptional regulator  31.29 
 
 
158 aa  76.3  0.000000000001  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_3388  CarD family transcriptional regulator  33.11 
 
 
159 aa  75.9  0.000000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_0142  transcriptional regulator, CarD family  32.43 
 
 
161 aa  75.5  0.000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.432895  normal  0.208842 
 
 
-
 
NC_013216  Dtox_0259  transcriptional regulator, CarD family  33.11 
 
 
158 aa  75.5  0.000000000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.000000116082  normal  0.0229238 
 
 
-
 
NC_013739  Cwoe_1687  transcriptional regulator, CarD family  28.99 
 
 
171 aa  74.3  0.000000000004  Conexibacter woesei DSM 14684  Bacteria  normal  0.613225  normal  0.385121 
 
 
-
 
NC_010816  BLD_0751  transcriptional_regulator  31.33 
 
 
197 aa  73.9  0.000000000006  Bifidobacterium longum DJO10A  Bacteria  normal  0.024387  n/a   
 
 
-
 
NC_014150  Bmur_1516  transcriptional regulator, CarD family  31.69 
 
 
191 aa  73.6  0.000000000006  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_0184  CarD family transcriptional regulator  30.13 
 
 
158 aa  73.2  0.000000000009  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.0000461905  n/a   
 
 
-
 
NC_007333  Tfu_2907  CarD family transcriptional regulator  31.76 
 
 
160 aa  73.2  0.00000000001  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_4255  CarD family transcriptional regulator  31.76 
 
 
160 aa  71.6  0.00000000002  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_00900  transcriptional regulator, CarD family  26.47 
 
 
176 aa  72.4  0.00000000002  Halothermothrix orenii H 168  Bacteria  decreased coverage  8.92061e-17  n/a   
 
 
-
 
NC_009921  Franean1_0362  CarD family transcriptional regulator  31.76 
 
 
160 aa  71.6  0.00000000002  Frankia sp. EAN1pec  Bacteria  normal  0.0755625  hitchhiker  0.00187432 
 
 
-
 
NC_009380  Strop_4262  transcription factor CarD  31.76 
 
 
161 aa  71.2  0.00000000003  Salinispora tropica CNB-440  Bacteria  normal  normal  0.102192 
 
 
-
 
NC_009953  Sare_4692  CarD family transcriptional regulator  31.76 
 
 
161 aa  71.2  0.00000000003  Salinispora arenicola CNS-205  Bacteria  normal  0.372756  normal 
 
 
-
 
NC_011772  BCG9842_B2164  transcriptional regulator, CarD family  29.93 
 
 
153 aa  71.6  0.00000000003  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_0651  transcriptional regulator, CarD family  31.54 
 
 
160 aa  71.2  0.00000000004  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.058243  n/a   
 
 
-
 
NC_014165  Tbis_0501  CarD family transcriptional regulator  31.76 
 
 
163 aa  71.2  0.00000000004  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_4319  transcriptional regulator, CarD family  31.08 
 
 
160 aa  70.5  0.00000000005  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_2786  CarD family transcriptional regulator  28.06 
 
 
364 aa  70.9  0.00000000005  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.0756679  normal 
 
 
-
 
NC_010184  BcerKBAB4_3335  CarD family transcriptional regulator  29.93 
 
 
158 aa  70.5  0.00000000005  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.512684  n/a   
 
 
-
 
NC_013510  Tcur_0703  transcriptional regulator, CarD family  31.08 
 
 
160 aa  70.5  0.00000000006  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0540347  n/a   
 
 
-
 
NC_013595  Sros_0963  CarD family transcriptional regulator  31.08 
 
 
160 aa  69.3  0.0000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_03770  transcriptional regulator, CarD family  30.41 
 
 
160 aa  69.7  0.0000000001  Micrococcus luteus NCTC 2665  Bacteria  normal  0.0832449  n/a   
 
 
-
 
NC_008699  Noca_4040  CarD family transcriptional regulator  30.2 
 
 
161 aa  69.7  0.0000000001  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2940  CarD family transcriptional regulator  29.61 
 
 
158 aa  69.7  0.0000000001  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0340  transcriptional regulator, CarD family  30.32 
 
 
159 aa  69.7  0.0000000001  Clostridium cellulolyticum H10  Bacteria  normal  0.18012  n/a   
 
 
-
 
NC_013169  Ksed_03720  transcriptional regulator, CarD family  29.05 
 
 
160 aa  69.3  0.0000000002  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.178862 
 
 
-
 
NC_013159  Svir_35090  transcriptional regulator, CarD family  31.08 
 
 
163 aa  69.3  0.0000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.86286 
 
 
-
 
NC_008146  Mmcs_4740  CarD family transcriptional regulator  29.73 
 
 
162 aa  68.2  0.0000000003  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4826  CarD family transcriptional regulator  29.73 
 
 
162 aa  68.2  0.0000000003  Mycobacterium sp. KMS  Bacteria  normal  0.652741  normal  0.999363 
 
 
-
 
NC_009077  Mjls_5126  CarD family transcriptional regulator  29.73 
 
 
162 aa  68.2  0.0000000003  Mycobacterium sp. JLS  Bacteria  normal  normal  0.593452 
 
 
-
 
NC_009338  Mflv_1444  CarD family transcriptional regulator  30.28 
 
 
162 aa  68.2  0.0000000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.250117 
 
 
-
 
NC_008726  Mvan_5340  CarD family transcriptional regulator  30.28 
 
 
162 aa  67.8  0.0000000004  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_0970  transcription factor CarD  28.8 
 
 
162 aa  67.8  0.0000000004  Gordonia bronchialis DSM 43247  Bacteria  normal  0.0421613  n/a   
 
 
-
 
NC_008541  Arth_0726  CarD family transcriptional regulator  30.41 
 
 
160 aa  67.4  0.0000000005  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_0852  transcriptional regulator, CarD family  30.41 
 
 
160 aa  67.4  0.0000000005  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_006274  BCZK2880  CarD family transcriptional regulator  29.93 
 
 
158 aa  67  0.0000000006  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_13616  transcription factor  31.2 
 
 
162 aa  67  0.0000000006  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.392977 
 
 
-
 
NC_011772  BCG9842_B1560  transcriptional regulator, CarD family  28.57 
 
 
158 aa  67  0.0000000006  Bacillus cereus G9842  Bacteria  normal  0.879343  normal  0.22005 
 
 
-
 
NC_002967  TDE2290  transcriptional regulator, putative  30.59 
 
 
208 aa  67  0.0000000007  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0399  transcriptional regulator, CarD family  33.56 
 
 
159 aa  67  0.0000000007  Ammonifex degensii KC4  Bacteria  hitchhiker  0.00433509  n/a   
 
 
-
 
NC_014158  Tpau_0601  transcriptional regulator, CarD family  30.5 
 
 
162 aa  66.6  0.0000000008  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.251005  n/a   
 
 
-
 
NC_011725  BCB4264_A3756  transcriptional regulator, CarD family  28.57 
 
 
158 aa  66.6  0.0000000009  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
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