More than 300 homologs were found in PanDaTox collection
for query gene Msil_0375 on replicon NC_011666
Organism: Methylocella silvestris BL2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011666  Msil_0375  short-chain dehydrogenase/reductase SDR  100 
 
 
254 aa  508  1e-143  Methylocella silvestris BL2  Bacteria  n/a    normal  0.187579 
 
 
-
 
NC_010581  Bind_1222  short-chain dehydrogenase/reductase SDR  60.4 
 
 
258 aa  293  2e-78  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.461582  normal 
 
 
-
 
NC_009636  Smed_1362  short-chain dehydrogenase/reductase SDR  47.2 
 
 
282 aa  218  7.999999999999999e-56  Sinorhizobium medicae WSM419  Bacteria  normal  0.390824  normal 
 
 
-
 
NC_012850  Rleg_1619  short-chain dehydrogenase/reductase SDR  44.49 
 
 
277 aa  214  9.999999999999999e-55  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.44916 
 
 
-
 
NC_011369  Rleg2_1440  short-chain dehydrogenase/reductase SDR  44.08 
 
 
277 aa  213  3.9999999999999995e-54  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.313918 
 
 
-
 
NC_011901  Tgr7_1398  short-chain dehydrogenase/reductase SDR  47.93 
 
 
249 aa  209  3e-53  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.646056  n/a   
 
 
-
 
NC_011989  Avi_0085  gluconate 5-dehydrogenase  46.37 
 
 
256 aa  196  3e-49  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0729  Short-chain dehydrogenase/reductase SDR  43.55 
 
 
259 aa  191  9e-48  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.503076  n/a   
 
 
-
 
NC_009484  Acry_1727  short-chain dehydrogenase/reductase SDR  42.98 
 
 
265 aa  171  7.999999999999999e-42  Acidiphilium cryptum JF-5  Bacteria  normal  0.218017  n/a   
 
 
-
 
NC_011992  Dtpsy_2391  short-chain dehydrogenase/reductase SDR  37.9 
 
 
260 aa  163  2.0000000000000002e-39  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_1889  short-chain dehydrogenase/reductase SDR  37.9 
 
 
256 aa  163  2.0000000000000002e-39  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_2964  short-chain dehydrogenase/reductase SDR  38.31 
 
 
260 aa  163  3e-39  Acidovorax sp. JS42  Bacteria  normal  normal  0.166977 
 
 
-
 
NC_008781  Pnap_1455  short-chain dehydrogenase/reductase SDR  39.27 
 
 
260 aa  157  2e-37  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.271159  normal 
 
 
-
 
NC_011662  Tmz1t_1059  short-chain dehydrogenase/reductase SDR  37.04 
 
 
300 aa  156  3e-37  Thauera sp. MZ1T  Bacteria  normal  0.261261  n/a   
 
 
-
 
NC_009379  Pnuc_1974  short-chain dehydrogenase/reductase SDR  34.98 
 
 
258 aa  151  8e-36  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A0230  hypothetical protein  39.3 
 
 
261 aa  148  9e-35  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.599536 
 
 
-
 
NC_010524  Lcho_0468  short-chain dehydrogenase/reductase SDR  36.67 
 
 
257 aa  147  2.0000000000000003e-34  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007298  Daro_0496  Short-chain dehydrogenase/reductase SDR  38.49 
 
 
251 aa  146  3e-34  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.661007 
 
 
-
 
NC_007963  Csal_0463  short-chain dehydrogenase/reductase SDR  36.4 
 
 
264 aa  144  2e-33  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_3172  short-chain dehydrogenase/reductase SDR  33.73 
 
 
250 aa  134  9.999999999999999e-31  Pseudomonas putida W619  Bacteria  normal  0.0471693  normal 
 
 
-
 
NC_007336  Reut_C6102  Short-chain dehydrogenase/reductase SDR  38.78 
 
 
264 aa  133  1.9999999999999998e-30  Ralstonia eutropha JMP134  Bacteria  normal  0.0605001  n/a   
 
 
-
 
NC_009439  Pmen_1069  short-chain dehydrogenase/reductase SDR  35.18 
 
 
251 aa  134  1.9999999999999998e-30  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_2097  short-chain dehydrogenase/reductase SDR  36.25 
 
 
238 aa  131  1.0000000000000001e-29  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.434652  n/a   
 
 
-
 
NC_008044  TM1040_0408  short-chain dehydrogenase/reductase SDR  33.61 
 
 
240 aa  131  1.0000000000000001e-29  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_0371  short-chain dehydrogenase/reductase SDR  34.5 
 
 
243 aa  131  1.0000000000000001e-29  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_4073  short-chain dehydrogenase/reductase SDR  32.48 
 
 
252 aa  129  5.0000000000000004e-29  Marinomonas sp. MWYL1  Bacteria  normal  0.576341  normal 
 
 
-
 
NC_012912  Dd1591_1178  short-chain dehydrogenase/reductase SDR  34.43 
 
 
239 aa  129  6e-29  Dickeya zeae Ech1591  Bacteria  normal  0.300792  n/a   
 
 
-
 
NC_011666  Msil_1220  short-chain dehydrogenase/reductase SDR  39.6 
 
 
267 aa  128  7.000000000000001e-29  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0396452 
 
 
-
 
NC_010322  PputGB1_2099  short-chain dehydrogenase/reductase SDR  37.7 
 
 
250 aa  128  1.0000000000000001e-28  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_01434  Short chain dehydrogenase family protein  32.47 
 
 
239 aa  128  1.0000000000000001e-28  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_1329  short-chain dehydrogenase/reductase SDR  31.33 
 
 
238 aa  127  2.0000000000000002e-28  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.371699  n/a   
 
 
-
 
NC_010002  Daci_5880  short-chain dehydrogenase/reductase SDR  38.17 
 
 
263 aa  126  4.0000000000000003e-28  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.195504 
 
 
-
 
NC_009457  VC0395_A0637  short chain dehydrogenase  33.06 
 
 
241 aa  124  1e-27  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000000368636  n/a   
 
 
-
 
NC_009436  Ent638_1490  short-chain dehydrogenase/reductase SDR  34.02 
 
 
239 aa  124  1e-27  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_1484  short-chain dehydrogenase/reductase SDR  33.73 
 
 
260 aa  122  8e-27  Marinobacter aquaeolei VT8  Bacteria  normal  0.591298  n/a   
 
 
-
 
NC_002947  PP_2737  short chain dehydrogenase/reductase family oxidoreductase  36.59 
 
 
250 aa  121  9.999999999999999e-27  Pseudomonas putida KT2440  Bacteria  normal  0.420132  normal 
 
 
-
 
NC_008700  Sama_0813  short chain dehydrogenase/reductase family oxidoreductase  34.76 
 
 
253 aa  121  9.999999999999999e-27  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1087  short-chain dehydrogenase/reductase family protein  33.33 
 
 
245 aa  120  1.9999999999999998e-26  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.3765  n/a   
 
 
-
 
NC_009049  Rsph17029_2750  short-chain dehydrogenase/reductase SDR  33.33 
 
 
245 aa  120  1.9999999999999998e-26  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0379321  normal 
 
 
-
 
NC_007947  Mfla_2676  short chain dehydrogenase  34.39 
 
 
264 aa  120  3e-26  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.989358 
 
 
-
 
NC_009512  Pput_3016  short-chain dehydrogenase/reductase SDR  36.18 
 
 
250 aa  120  3e-26  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4895  short chain dehydrogenase  37.24 
 
 
258 aa  119  3.9999999999999996e-26  Polaromonas sp. JS666  Bacteria  hitchhiker  0.000739396  normal 
 
 
-
 
NC_009783  VIBHAR_01815  short chain dehydrogenase  34.73 
 
 
241 aa  119  3.9999999999999996e-26  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010581  Bind_0286  short-chain dehydrogenase/reductase SDR  37.87 
 
 
267 aa  119  4.9999999999999996e-26  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1481  short-chain dehydrogenase/reductase SDR  33.33 
 
 
240 aa  118  9e-26  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1119  oxidoreductase, short chain dehydrogenase/reductase family  32.79 
 
 
262 aa  117  9.999999999999999e-26  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_5291  short chain dehydrogenase  32.82 
 
 
260 aa  117  1.9999999999999998e-25  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003864  oxidoreductase short-chain dehydrogenase/reductase family  30.86 
 
 
241 aa  116  3e-25  Vibrio sp. Ex25  Bacteria  normal  0.013707  n/a   
 
 
-
 
NC_007614  Nmul_A2453  short chain dehydrogenase  35.62 
 
 
261 aa  116  3.9999999999999997e-25  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4738  Short-chain dehydrogenase/reductase SDR  33.02 
 
 
260 aa  115  6e-25  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.9226  normal  0.284155 
 
 
-
 
NC_007643  Rru_A0427  Short-chain dehydrogenase/reductase SDR  38.34 
 
 
256 aa  115  6e-25  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2469  TonB-dependent receptor  31.85 
 
 
265 aa  115  6.9999999999999995e-25  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_6048  short chain dehydrogenase  33.07 
 
 
266 aa  115  7.999999999999999e-25  Delftia acidovorans SPH-1  Bacteria  normal  0.549002  normal 
 
 
-
 
NC_010506  Swoo_2775  short-chain dehydrogenase/reductase SDR  33.47 
 
 
238 aa  115  1.0000000000000001e-24  Shewanella woodyi ATCC 51908  Bacteria  normal  0.88847  normal  0.739494 
 
 
-
 
NC_009428  Rsph17025_2941  short-chain dehydrogenase/reductase SDR  31.65 
 
 
245 aa  114  1.0000000000000001e-24  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.19024  normal  0.201158 
 
 
-
 
NC_007802  Jann_4017  short-chain dehydrogenase/reductase SDR  32.75 
 
 
245 aa  112  6e-24  Jannaschia sp. CCS1  Bacteria  normal  0.980517  normal 
 
 
-
 
NC_007005  Psyr_0959  Short-chain dehydrogenase/reductase SDR  30.52 
 
 
262 aa  110  3e-23  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_4782  short chain dehydrogenase  33.72 
 
 
264 aa  110  3e-23  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_006348  BMA2291  short chain dehydrogenase/reductase family oxidoreductase  36.59 
 
 
262 aa  109  4.0000000000000004e-23  Burkholderia mallei ATCC 23344  Bacteria  normal  0.448302  n/a   
 
 
-
 
NC_009076  BURPS1106A_3273  short chain dehydrogenase/reductase family oxidoreductase  36.59 
 
 
262 aa  109  4.0000000000000004e-23  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3288  short chain dehydrogenase/reductase family oxidoreductase  36.59 
 
 
262 aa  109  4.0000000000000004e-23  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1063  short chain dehydrogenase/reductase family oxidoreductase  36.59 
 
 
262 aa  109  4.0000000000000004e-23  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2168  short chain dehydrogenase/reductase family oxidoreductase  36.59 
 
 
262 aa  109  4.0000000000000004e-23  Burkholderia mallei NCTC 10247  Bacteria  normal  0.408948  n/a   
 
 
-
 
NC_008709  Ping_1000  short-chain dehydrogenase/reductase SDR  30.68 
 
 
240 aa  109  4.0000000000000004e-23  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_008785  BMASAVP1_A0537  short chain dehydrogenase/reductase family oxidoreductase  36.59 
 
 
262 aa  109  4.0000000000000004e-23  Burkholderia mallei SAVP1  Bacteria  normal  0.618923  n/a   
 
 
-
 
NC_007951  Bxe_A4248  short chain dehydrogenase  31.98 
 
 
259 aa  109  5e-23  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.215124 
 
 
-
 
NC_009074  BURPS668_3237  short chain dehydrogenase/reductase family oxidoreductase  36.59 
 
 
262 aa  108  6e-23  Burkholderia pseudomallei 668  Bacteria  normal  0.85457  n/a   
 
 
-
 
NC_008825  Mpe_A3806  short chain dehydrogenase  34.29 
 
 
260 aa  108  6e-23  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.187681 
 
 
-
 
NC_007298  Daro_3863  short chain dehydrogenase  33.07 
 
 
260 aa  108  1e-22  Dechloromonas aromatica RCB  Bacteria  normal  0.331172  normal 
 
 
-
 
NC_010682  Rpic_1148  short-chain dehydrogenase/reductase SDR  37.5 
 
 
261 aa  107  1e-22  Ralstonia pickettii 12J  Bacteria  normal  0.0372396  normal 
 
 
-
 
NC_007954  Sden_3371  short-chain dehydrogenase/reductase SDR  30.45 
 
 
239 aa  107  2e-22  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_0946  short-chain dehydrogenase/reductase SDR  34.48 
 
 
255 aa  107  2e-22  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.841301 
 
 
-
 
NC_010622  Bphy_0185  short chain dehydrogenase  33.33 
 
 
256 aa  107  2e-22  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0151  short chain dehydrogenase  33.58 
 
 
261 aa  106  3e-22  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1382  short chain dehydrogenase/reductase family oxidoreductase  28.46 
 
 
251 aa  106  4e-22  Colwellia psychrerythraea 34H  Bacteria  normal  0.0851667  n/a   
 
 
-
 
NC_011988  Avi_5235  oxidoreductase protein  33.88 
 
 
275 aa  105  5e-22  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_1238  short-chain dehydrogenase/reductase SDR  29.64 
 
 
266 aa  105  6e-22  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_006348  BMA0087  short chain dehydrogenase  32.93 
 
 
259 aa  105  7e-22  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0589  short chain dehydrogenase  32.93 
 
 
259 aa  105  7e-22  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2000  short chain dehydrogenase  32.93 
 
 
259 aa  105  7e-22  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2288  short chain dehydrogenase  32.93 
 
 
259 aa  105  7e-22  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3096  short chain dehydrogenase  32.93 
 
 
259 aa  105  7e-22  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0407  short chain dehydrogenase  32.52 
 
 
259 aa  105  1e-21  Burkholderia pseudomallei 668  Bacteria  normal  0.317505  n/a   
 
 
-
 
NC_007651  BTH_I0352  short chain dehydrogenase  32.93 
 
 
259 aa  105  1e-21  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0749  short-chain dehydrogenase/reductase SDR  37.18 
 
 
261 aa  105  1e-21  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc0284  short chain dehydrogenase  32.8 
 
 
266 aa  103  2e-21  Ralstonia solanacearum GMI1000  Bacteria  normal  0.600145  normal 
 
 
-
 
NC_011761  AFE_3307  short chain dehydrogenase  34.11 
 
 
261 aa  104  2e-21  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.0864591  n/a   
 
 
-
 
NC_009076  BURPS1106A_0427  short chain dehydrogenase  32.52 
 
 
259 aa  104  2e-21  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2904  short chain dehydrogenase  34.11 
 
 
261 aa  104  2e-21  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  hitchhiker  0.000166666  decreased coverage  0.000436169 
 
 
-
 
NC_013730  Slin_0208  short-chain dehydrogenase/reductase SDR  36.84 
 
 
263 aa  103  3e-21  Spirosoma linguale DSM 74  Bacteria  normal  0.196422  normal 
 
 
-
 
NC_007969  Pcryo_0727  short-chain dehydrogenase/reductase SDR  30.93 
 
 
245 aa  103  3e-21  Psychrobacter cryohalolentis K5  Bacteria  decreased coverage  0.00978147  normal 
 
 
-
 
NC_007404  Tbd_2785  short chain dehydrogenase  32.24 
 
 
254 aa  103  4e-21  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.73728  normal  0.939169 
 
 
-
 
NC_012856  Rpic12D_0142  short chain dehydrogenase  31.54 
 
 
266 aa  102  4e-21  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0134  short chain dehydrogenase  31.54 
 
 
266 aa  102  5e-21  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1537  short-chain dehydrogenase/reductase SDR  31.58 
 
 
255 aa  102  8e-21  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1167  short-chain dehydrogenase/reductase SDR  29.25 
 
 
266 aa  102  8e-21  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A6265  short chain dehydrogenase  32.52 
 
 
257 aa  101  9e-21  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2539  short-chain dehydrogenase/reductase SDR  33.91 
 
 
275 aa  101  1e-20  Methylobacterium extorquens PA1  Bacteria  normal  0.0247795  normal 
 
 
-
 
NC_009524  PsycPRwf_1175  short-chain dehydrogenase/reductase SDR  28.27 
 
 
254 aa  101  1e-20  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_3381  short-chain dehydrogenase/reductase SDR  37.91 
 
 
257 aa  101  1e-20  Nocardioides sp. JS614  Bacteria  normal  0.804468  n/a   
 
 
-
 
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