More than 300 homologs were found in PanDaTox collection
for query gene Mrad2831_5378 on replicon NC_010505
Organism: Methylobacterium radiotolerans JCM 2831



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010505  Mrad2831_5378  cold-shock DNA-binding domain-containing protein  100 
 
 
69 aa  144  4.0000000000000006e-34  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.260469 
 
 
-
 
NC_011757  Mchl_0846  cold-shock DNA-binding domain protein  89.71 
 
 
69 aa  135  1e-31  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.012505 
 
 
-
 
NC_010172  Mext_0886  cold-shock protein DNA-binding  89.71 
 
 
69 aa  135  1e-31  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0757124 
 
 
-
 
NC_010725  Mpop_0812  cold-shock DNA-binding domain protein  88.41 
 
 
69 aa  134  3.0000000000000003e-31  Methylobacterium populi BJ001  Bacteria  normal  0.674883  normal  0.12074 
 
 
-
 
NC_011894  Mnod_1810  cold-shock DNA-binding domain protein  84.06 
 
 
69 aa  126  1.0000000000000001e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.275955  n/a   
 
 
-
 
NC_010511  M446_5491  cold-shock DNA-binding domain-containing protein  82.61 
 
 
69 aa  123  9e-28  Methylobacterium sp. 4-46  Bacteria  normal  0.599855  normal  0.0633447 
 
 
-
 
NC_010172  Mext_1893  cold-shock protein DNA-binding  78.26 
 
 
69 aa  121  3e-27  Methylobacterium extorquens PA1  Bacteria  normal  0.208302  normal 
 
 
-
 
NC_010505  Mrad2831_5022  cold-shock DNA-binding domain-containing protein  79.71 
 
 
69 aa  121  3e-27  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.499823  normal 
 
 
-
 
NC_010510  Mrad2831_6274  cold-shock DNA-binding domain-containing protein  79.41 
 
 
69 aa  119  1.9999999999999998e-26  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.517051  normal 
 
 
-
 
NC_010172  Mext_1185  cold-shock protein DNA-binding  75.36 
 
 
69 aa  117  6e-26  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0202677 
 
 
-
 
NC_011757  Mchl_1345  cold-shock DNA-binding domain protein  75.36 
 
 
69 aa  117  6e-26  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.708004 
 
 
-
 
NC_010172  Mext_1892  cold-shock protein DNA-binding  75.36 
 
 
69 aa  116  9.999999999999999e-26  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_4677  cold-shock DNA-binding domain protein  73.91 
 
 
69 aa  115  1.9999999999999998e-25  Methylobacterium populi BJ001  Bacteria  normal  0.403947  normal 
 
 
-
 
NC_011666  Msil_1798  cold-shock DNA-binding domain protein  75.36 
 
 
69 aa  115  1.9999999999999998e-25  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010510  Mrad2831_6033  cold-shock DNA-binding domain-containing protein  75.36 
 
 
69 aa  115  1.9999999999999998e-25  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.263263  normal  0.0669471 
 
 
-
 
NC_012850  Rleg_0922  cold-shock DNA-binding domain protein  73.91 
 
 
69 aa  113  6.9999999999999995e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.11423  normal  0.220498 
 
 
-
 
NC_010511  M446_2980  cold-shock DNA-binding domain-containing protein  72.46 
 
 
73 aa  113  6.9999999999999995e-25  Methylobacterium sp. 4-46  Bacteria  decreased coverage  0.0073832  normal  0.0936276 
 
 
-
 
NC_011369  Rleg2_0809  cold-shock DNA-binding domain protein  73.91 
 
 
69 aa  113  6.9999999999999995e-25  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.13645 
 
 
-
 
NC_011757  Mchl_4533  cold-shock DNA-binding domain protein  72.46 
 
 
69 aa  113  7.999999999999999e-25  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_4164  cold-shock protein DNA-binding  72.46 
 
 
69 aa  113  7.999999999999999e-25  Methylobacterium extorquens PA1  Bacteria  normal  0.593748  normal 
 
 
-
 
NC_010581  Bind_3098  cold-shock DNA-binding domain-containing protein  72.46 
 
 
69 aa  113  7.999999999999999e-25  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.392301 
 
 
-
 
NC_011004  Rpal_4194  cold-shock DNA-binding domain protein  75.36 
 
 
70 aa  112  1.0000000000000001e-24  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.69443  n/a   
 
 
-
 
NC_007778  RPB_1791  cold-shock DNA-binding domain-containing protein  75.36 
 
 
70 aa  112  1.0000000000000001e-24  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.29852 
 
 
-
 
NC_007958  RPD_3513  cold-shock DNA-binding domain protein  75.36 
 
 
70 aa  112  1.0000000000000001e-24  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_7022  cold-shock DNA-binding protein family protein  75.36 
 
 
70 aa  112  1.0000000000000001e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0599246  normal  0.604228 
 
 
-
 
NC_011366  Rleg2_5655  cold-shock DNA-binding domain protein  73.91 
 
 
69 aa  112  2.0000000000000002e-24  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.313891  normal 
 
 
-
 
NC_011894  Mnod_0841  cold-shock DNA-binding domain protein  72.46 
 
 
69 aa  112  2.0000000000000002e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_012858  Rleg_6591  cold-shock DNA-binding domain protein  73.91 
 
 
69 aa  112  2.0000000000000002e-24  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  hitchhiker  0.00426867 
 
 
-
 
NC_007925  RPC_3705  cold-shock DNA-binding domain-containing protein  73.91 
 
 
70 aa  110  5e-24  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.59949  normal 
 
 
-
 
NC_008254  Meso_1909  cold-shock DNA-binding protein family protein  72.06 
 
 
69 aa  110  6e-24  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_1949  cold-shock DNA-binding domain-containing protein  68.12 
 
 
69 aa  110  7.000000000000001e-24  Sinorhizobium medicae WSM419  Bacteria  normal  0.589262  normal  0.169365 
 
 
-
 
NC_011989  Avi_0142  cold shock protein  72.46 
 
 
74 aa  110  7.000000000000001e-24  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_4422  cold-shock DNA-binding domain protein  72.06 
 
 
69 aa  110  9e-24  Methylobacterium populi BJ001  Bacteria  normal  normal  0.369024 
 
 
-
 
NC_007406  Nwi_0311  cold-shock protein, DNA-binding  77.27 
 
 
68 aa  109  1.0000000000000001e-23  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.656988  normal 
 
 
-
 
NC_011757  Mchl_4315  cold-shock DNA-binding domain protein  69.57 
 
 
69 aa  109  1.0000000000000001e-23  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0374104  normal  0.166197 
 
 
-
 
NC_008254  Meso_3306  cold-shock DNA-binding protein family protein  69.57 
 
 
69 aa  109  1.0000000000000001e-23  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_3947  cold-shock protein DNA-binding  69.57 
 
 
69 aa  109  1.0000000000000001e-23  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.246482 
 
 
-
 
NC_010338  Caul_4283  cold-shock DNA-binding domain-containing protein  76.47 
 
 
68 aa  108  2.0000000000000002e-23  Caulobacter sp. K31  Bacteria  normal  normal  0.331477 
 
 
-
 
NC_011369  Rleg2_0217  cold-shock DNA-binding domain protein  71.01 
 
 
69 aa  108  2.0000000000000002e-23  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_0246  cold-shock DNA-binding domain protein  71.01 
 
 
69 aa  108  2.0000000000000002e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.251668  normal 
 
 
-
 
NC_007964  Nham_0398  cold-shock DNA-binding domain-containing protein  75.76 
 
 
68 aa  108  2.0000000000000002e-23  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_012853  Rleg_5928  cold-shock DNA-binding domain protein  71.01 
 
 
69 aa  108  2.0000000000000002e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4458  cold-shock DNA-binding domain-containing protein  69.57 
 
 
69 aa  109  2.0000000000000002e-23  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008783  BARBAKC583_0977  cold-shock DNA-binding family protein  70.59 
 
 
69 aa  107  4.0000000000000004e-23  Bartonella bacilliformis KC583  Bacteria  normal  0.717834  n/a   
 
 
-
 
NC_008347  Mmar10_1185  cold-shock DNA-binding protein family protein  69.12 
 
 
69 aa  107  5e-23  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR1492  cold-shock family protein  69.57 
 
 
69 aa  106  9.000000000000001e-23  Brucella suis 1330  Bacteria  normal  0.136425  n/a   
 
 
-
 
NC_009667  Oant_1676  cold-shock DNA-binding domain-containing protein  69.57 
 
 
69 aa  106  1e-22  Ochrobactrum anthropi ATCC 49188  Bacteria  decreased coverage  0.00586625  n/a   
 
 
-
 
NC_009621  Smed_5162  cold-shock DNA-binding domain-containing protein  68.12 
 
 
69 aa  106  1e-22  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_0078  cold-shock DNA-binding domain protein  69.57 
 
 
69 aa  106  1e-22  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.19657  normal  0.176991 
 
 
-
 
NC_009505  BOV_0430  cold-shock family protein  66.18 
 
 
69 aa  105  2e-22  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_0093  cold-shock DNA-binding domain protein  69.57 
 
 
69 aa  105  2e-22  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.941798  normal 
 
 
-
 
NC_009621  Smed_5421  cold-shock DNA-binding domain-containing protein  69.12 
 
 
68 aa  105  3e-22  Sinorhizobium medicae WSM419  Bacteria  normal  0.14942  normal  0.64967 
 
 
-
 
NC_010581  Bind_3035  cold-shock DNA-binding domain-containing protein  68.12 
 
 
69 aa  104  4e-22  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.084577  normal 
 
 
-
 
NC_009636  Smed_2005  cold-shock DNA-binding domain-containing protein  66.18 
 
 
69 aa  103  7e-22  Sinorhizobium medicae WSM419  Bacteria  normal  0.745199  normal 
 
 
-
 
NC_009505  BOV_1446  cold-shock family protein  68.75 
 
 
105 aa  101  3e-21  Brucella ovis ATCC 25840  Bacteria  normal  0.215876  n/a   
 
 
-
 
NC_009719  Plav_3161  cold-shock DNA-binding domain-containing protein  69.57 
 
 
69 aa  101  4e-21  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.161902  normal  0.108125 
 
 
-
 
NC_009719  Plav_2199  cold-shock DNA-binding domain-containing protein  69.57 
 
 
67 aa  99.8  1e-20  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.735899 
 
 
-
 
NC_010338  Caul_3723  cold-shock DNA-binding domain-containing protein  69.84 
 
 
179 aa  100  1e-20  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_2750  cold-shock DNA-binding domain-containing protein  66.67 
 
 
69 aa  98.6  2e-20  Nitrobacter hamburgensis X14  Bacteria  normal  0.33157  n/a   
 
 
-
 
NC_011004  Rpal_3878  cold-shock DNA-binding domain protein  65.22 
 
 
69 aa  98.2  3e-20  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_2842  cold-shock DNA-binding domain-containing protein  69.57 
 
 
68 aa  97.8  5e-20  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_1056  cold-shock DNA-binding domain protein  64.18 
 
 
70 aa  97.8  5e-20  Methylocella silvestris BL2  Bacteria  n/a    normal  0.102694 
 
 
-
 
NC_007406  Nwi_2375  cold-shock protein, DNA-binding  66.67 
 
 
69 aa  97.1  6e-20  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.583398  normal 
 
 
-
 
NC_009720  Xaut_1556  cold-shock DNA-binding domain-containing protein  64.18 
 
 
70 aa  97.1  7e-20  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0810  cold-shock DNA-binding domain-containing protein  64.18 
 
 
69 aa  96.3  1e-19  Nitrobacter hamburgensis X14  Bacteria  normal  0.509144  n/a   
 
 
-
 
NC_007964  Nham_3436  cold-shock DNA-binding domain-containing protein  66.67 
 
 
69 aa  95.9  1e-19  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_2176  cold-shock DNA-binding domain-containing protein  65.67 
 
 
69 aa  95.5  2e-19  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.141033  normal  0.0176419 
 
 
-
 
NC_007958  RPD_3257  cold-shock protein, DNA-binding  65.67 
 
 
69 aa  95.5  2e-19  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0261895 
 
 
-
 
NC_009049  Rsph17029_2040  cold-shock DNA-binding domain-containing protein  67.16 
 
 
68 aa  95.1  3e-19  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0386  cold-shock DNA-binding protein family protein  67.16 
 
 
68 aa  95.1  3e-19  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.654168  n/a   
 
 
-
 
NC_007964  Nham_2846  cold-shock DNA-binding domain-containing protein  66.15 
 
 
73 aa  95.1  3e-19  Nitrobacter hamburgensis X14  Bacteria  normal  0.495681  n/a   
 
 
-
 
NC_009428  Rsph17025_0850  cold-shock DNA-binding domain-containing protein  67.16 
 
 
68 aa  95.1  3e-19  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_3209  cold-shock DNA-binding domain-containing protein  68.66 
 
 
67 aa  94.7  4e-19  Caulobacter sp. K31  Bacteria  normal  normal  0.522557 
 
 
-
 
NC_007964  Nham_2034  cold-shock DNA-binding domain-containing protein  67.16 
 
 
67 aa  94.7  4e-19  Nitrobacter hamburgensis X14  Bacteria  normal  0.465881  n/a   
 
 
-
 
NC_007964  Nham_2533  cold-shock DNA-binding domain-containing protein  62.69 
 
 
69 aa  94.4  4e-19  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_0954  cold-shock DNA-binding domain-containing protein  68.66 
 
 
68 aa  94.4  5e-19  Paracoccus denitrificans PD1222  Bacteria  normal  0.631034  normal  0.812615 
 
 
-
 
NC_011365  Gdia_0270  cold-shock DNA-binding domain protein  64.18 
 
 
67 aa  94  6e-19  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_2681  cold-shock DNA-binding domain protein  67.65 
 
 
68 aa  93.6  8e-19  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.741556  normal 
 
 
-
 
NC_007643  Rru_A1521  cold-shock DNA-binding protein family protein  67.16 
 
 
68 aa  93.6  8e-19  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.490356  n/a   
 
 
-
 
NC_009484  Acry_0003  cold-shock DNA-binding domain-containing protein  66.18 
 
 
67 aa  92.8  1e-18  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1179  cold-shock DNA-binding domain-containing protein  64.62 
 
 
70 aa  93.2  1e-18  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.810409  normal  0.131975 
 
 
-
 
NC_007925  RPC_0899  cold-shock DNA-binding domain-containing protein  65.62 
 
 
70 aa  92.8  1e-18  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0367  cold-shock DNA-binding domain-containing protein  64.62 
 
 
73 aa  93.2  1e-18  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_1727  cold-shock DNA-binding protein family protein  61.76 
 
 
68 aa  92  2e-18  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_7552  cold-shock DNA-binding protein family protein  63.77 
 
 
69 aa  92.4  2e-18  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.229595  normal 
 
 
-
 
NC_009719  Plav_0932  cold-shock DNA-binding domain-containing protein  66.67 
 
 
68 aa  91.3  4e-18  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1364  cold-shock DNA-binding domain protein  64.06 
 
 
71 aa  91.3  4e-18  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.185476  n/a   
 
 
-
 
NC_007958  RPD_1283  cold-shock DNA-binding domain protein  64.06 
 
 
70 aa  90.9  5e-18  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.165738 
 
 
-
 
NC_009485  BBta_1730  cold-shock DNA-binding protein family protein  64.06 
 
 
71 aa  90.5  6e-18  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.244991 
 
 
-
 
NC_009511  Swit_4644  cold-shock DNA-binding protein family protein  66.18 
 
 
68 aa  90.1  1e-17  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1914  cold-shock DNA-binding protein family protein  62.32 
 
 
68 aa  89.4  1e-17  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0769  cold-shock DNA-binding domain protein  64.18 
 
 
69 aa  88.6  3e-17  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.218929 
 
 
-
 
NC_010581  Bind_0662  cold-shock DNA-binding domain-containing protein  61.54 
 
 
70 aa  87.8  5e-17  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.662229 
 
 
-
 
NC_007406  Nwi_3054  cold-shock protein, DNA-binding  64.18 
 
 
66 aa  87.4  5e-17  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.0480379 
 
 
-
 
NC_008254  Meso_2134  cold-shock DNA-binding protein family protein  58.21 
 
 
70 aa  87.4  6e-17  Chelativorans sp. BNC1  Bacteria  normal  0.895111  n/a   
 
 
-
 
NC_007925  RPC_4272  cold-shock DNA-binding domain-containing protein  61.19 
 
 
66 aa  87  7e-17  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.217345  normal  0.672054 
 
 
-
 
NC_007958  RPD_2957  cold-shock DNA-binding domain protein  60.87 
 
 
67 aa  87  7e-17  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.200644  normal 
 
 
-
 
NC_009507  Swit_5339  cold-shock DNA-binding protein family protein  64.62 
 
 
71 aa  87  7e-17  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_2065  cold-shock DNA-binding domain-containing protein  57.97 
 
 
68 aa  86.7  9e-17  Paracoccus denitrificans PD1222  Bacteria  normal  hitchhiker  0.00142025 
 
 
-
 
NC_011894  Mnod_3853  cold-shock DNA-binding domain protein  53.62 
 
 
69 aa  86.3  1e-16  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
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