136 homologs were found in PanDaTox collection
for query gene Mnod_5597 on replicon NC_011894
Organism: Methylobacterium nodulans ORS 2060



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011894  Mnod_5597  putative transcriptional regulator, Crp/Fnr family  100 
 
 
246 aa  503  9.999999999999999e-143  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0675352  n/a   
 
 
-
 
NC_011894  Mnod_6130  putative transcriptional regulator, Crp/Fnr family  41.28 
 
 
244 aa  183  2.0000000000000003e-45  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011893  Mnod_8765  putative transcriptional regulator, Crp/Fnr family  41.28 
 
 
244 aa  182  4.0000000000000006e-45  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.474033  n/a   
 
 
-
 
NC_010725  Mpop_0133  transcriptional regulator, Crp/Fnr family  40.38 
 
 
268 aa  150  1e-35  Methylobacterium populi BJ001  Bacteria  normal  0.564261  normal  0.0379159 
 
 
-
 
NC_011757  Mchl_3788  transcriptional regulator, Crp/Fnr family  39.13 
 
 
249 aa  145  8.000000000000001e-34  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.371562 
 
 
-
 
NC_010172  Mext_3480  cyclic nucleotide-binding  39.13 
 
 
249 aa  145  8.000000000000001e-34  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0073  cyclic nucleotide-binding  36.4 
 
 
255 aa  144  1e-33  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3862  transcriptional regulator, Crp/Fnr family  39.5 
 
 
249 aa  141  8e-33  Methylobacterium populi BJ001  Bacteria  normal  0.582037  normal  0.123136 
 
 
-
 
NC_011757  Mchl_3385  transcriptional regulator, Crp/Fnr family  34.65 
 
 
384 aa  141  9e-33  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0783  cyclic nucleotide-binding  36.4 
 
 
376 aa  140  1.9999999999999998e-32  Methylobacterium extorquens PA1  Bacteria  normal  0.0359827  normal 
 
 
-
 
NC_010505  Mrad2831_1441  Crp/FNR family transcriptional regulator  36.96 
 
 
259 aa  135  5e-31  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.00010652 
 
 
-
 
NC_011757  Mchl_2990  transcriptional regulator, Crp/Fnr family  37.5 
 
 
244 aa  134  9.999999999999999e-31  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2763  cyclic nucleotide-binding  37.5 
 
 
244 aa  134  9.999999999999999e-31  Methylobacterium extorquens PA1  Bacteria  normal  0.746131  normal 
 
 
-
 
NC_011757  Mchl_0060  transcriptional regulator, Crp/Fnr family  33.77 
 
 
384 aa  133  1.9999999999999998e-30  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_2886  transcriptional regulator, Crp/Fnr family  36.96 
 
 
244 aa  132  3e-30  Methylobacterium populi BJ001  Bacteria  normal  0.473656  normal 
 
 
-
 
NC_010172  Mext_0772  cyclic nucleotide-binding  37.43 
 
 
254 aa  130  1.0000000000000001e-29  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_7493  transcriptional regulator, Crp/Fnr family  34.62 
 
 
246 aa  129  5.0000000000000004e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_4876  cyclic nucleotide-binding  39.78 
 
 
317 aa  129  5.0000000000000004e-29  Methylobacterium extorquens PA1  Bacteria  normal  0.155933  normal 
 
 
-
 
NC_011894  Mnod_7477  transcriptional regulator, Crp/Fnr family  34.07 
 
 
246 aa  128  8.000000000000001e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.403111  n/a   
 
 
-
 
NC_009485  BBta_4270  CRP/FNR family transcriptional regulator  35.27 
 
 
225 aa  127  1.0000000000000001e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0893417 
 
 
-
 
NC_011757  Mchl_5361  transcriptional regulator, Crp/Fnr family  39.25 
 
 
299 aa  127  2.0000000000000002e-28  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_2301  transcriptional regulator, Crp/Fnr family  37.43 
 
 
259 aa  126  3e-28  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.161686 
 
 
-
 
NC_010172  Mext_2024  cyclic nucleotide-binding  37.43 
 
 
259 aa  126  3e-28  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.996332 
 
 
-
 
NC_010725  Mpop_1986  transcriptional regulator, Crp/Fnr family  37.97 
 
 
259 aa  125  5e-28  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6209  Crp/FNR family transcriptional regulator  33.7 
 
 
247 aa  125  6e-28  Methylobacterium sp. 4-46  Bacteria  normal  0.0102902  normal  0.673418 
 
 
-
 
NC_010505  Mrad2831_1359  Crp/FNR family transcriptional regulator  37.36 
 
 
236 aa  124  1e-27  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.342582  normal  0.0135439 
 
 
-
 
NC_010725  Mpop_5417  transcriptional regulator, Crp/Fnr family  36.68 
 
 
298 aa  124  1e-27  Methylobacterium populi BJ001  Bacteria  normal  0.36754  normal 
 
 
-
 
NC_010505  Mrad2831_4786  cyclic nucleotide-binding protein  35.32 
 
 
243 aa  122  4e-27  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2367  putative transcriptional regulator, Crp/Fnr family  36.67 
 
 
255 aa  118  7.999999999999999e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0615204  n/a   
 
 
-
 
NC_010505  Mrad2831_1439  Crp/FNR family transcriptional regulator  37 
 
 
243 aa  116  3e-25  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.000118444 
 
 
-
 
NC_010511  M446_6403  Crp/FNR family transcriptional regulator  34.05 
 
 
246 aa  116  3e-25  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1835  cyclic nucleotide-binding protein  35.91 
 
 
281 aa  115  6e-25  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_4497  transcriptional regulator, Crp/Fnr family  32.26 
 
 
255 aa  112  4.0000000000000004e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0140276  n/a   
 
 
-
 
NC_010511  M446_1230  Crp/FNR family transcriptional regulator  34.95 
 
 
263 aa  112  4.0000000000000004e-24  Methylobacterium sp. 4-46  Bacteria  normal  0.583862  normal 
 
 
-
 
NC_011894  Mnod_3167  transcriptional regulator, Crp/Fnr family  31.5 
 
 
307 aa  112  5e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_1991  transcriptional regulator, Crp/Fnr family  36.26 
 
 
249 aa  112  6e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.250977  n/a   
 
 
-
 
NC_010511  M446_4564  Crp/FNR family transcriptional regulator  32.64 
 
 
257 aa  112  8.000000000000001e-24  Methylobacterium sp. 4-46  Bacteria  normal  decreased coverage  0.00106309 
 
 
-
 
NC_010505  Mrad2831_2433  Crp/FNR family transcriptional regulator  34.39 
 
 
247 aa  109  4.0000000000000004e-23  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.168738  normal  0.817452 
 
 
-
 
NC_011894  Mnod_3758  transcriptional regulator, Crp/Fnr family  30.11 
 
 
247 aa  107  2e-22  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_3499  CRP/FNR family transcriptional regulator  32.42 
 
 
286 aa  107  2e-22  Methylobacterium extorquens PA1  Bacteria  normal  0.519814  normal 
 
 
-
 
NC_010510  Mrad2831_6249  Crp/FNR family transcriptional regulator  35.15 
 
 
281 aa  106  3e-22  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.999867 
 
 
-
 
NC_010511  M446_4036  Crp/FNR family transcriptional regulator  31.94 
 
 
315 aa  107  3e-22  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2944  transcriptional regulator, Crp/Fnr family  31.15 
 
 
246 aa  105  9e-22  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0738845  normal 
 
 
-
 
NC_011369  Rleg2_2686  transcriptional regulator, Crp/Fnr family  31.15 
 
 
239 aa  104  1e-21  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.038663  normal 
 
 
-
 
NC_010505  Mrad2831_2950  Crp/FNR family transcriptional regulator  35.48 
 
 
250 aa  103  3e-21  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.908761  normal 
 
 
-
 
NC_008254  Meso_1485  cyclic nucleotide-binding protein  34.97 
 
 
244 aa  102  5e-21  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3389  transcriptional regulator, Crp/Fnr family  34.02 
 
 
248 aa  102  7e-21  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_0953  CRP/FNR family transcriptional regulator  33.5 
 
 
254 aa  93.6  2e-18  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3832  transcriptional regulator, Crp/Fnr family  33.69 
 
 
245 aa  93.2  4e-18  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA0414  Crp/FNR family transcriptional regulator  30.69 
 
 
252 aa  90.9  2e-17  Brucella suis 1330  Bacteria  normal  0.766284  n/a   
 
 
-
 
NC_009504  BOV_A0357  Crp/FNR family transcriptional regulator  30.69 
 
 
252 aa  90.9  2e-17  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2391  CRP/FNR family transcriptional regulator  32.97 
 
 
274 aa  88.6  8e-17  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3367  CRP/FNR family transcriptional regulator  30.32 
 
 
252 aa  87.8  2e-16  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.184948  n/a   
 
 
-
 
NC_009667  Oant_0266  CRP/FNR family transcriptional regulator  31.03 
 
 
253 aa  87  3e-16  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0859  CRP/FNR family transcriptional regulator  32.09 
 
 
234 aa  85.5  7e-16  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0477074 
 
 
-
 
NC_007493  RSP_1953  Crp/FNR family transcriptional regulator  30.19 
 
 
246 aa  84  0.000000000000002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_0955  CRP/FNR family transcriptional regulator  31.1 
 
 
226 aa  84.3  0.000000000000002  Sphingomonas wittichii RW1  Bacteria  normal  0.869769  normal 
 
 
-
 
NC_011004  Rpal_3741  transcriptional regulator, Crp/Fnr family  32.64 
 
 
242 aa  84.3  0.000000000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_0604  cyclic nucleotide-binding protein  30.19 
 
 
246 aa  83.6  0.000000000000003  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_0447  transcriptional regulator  25.79 
 
 
262 aa  83.6  0.000000000000003  Dinoroseobacter shibae DFL 12  Bacteria  decreased coverage  0.00494896  normal 
 
 
-
 
NC_008686  Pden_2108  CRP/FNR family transcriptional regulator  30.43 
 
 
243 aa  83.2  0.000000000000004  Paracoccus denitrificans PD1222  Bacteria  normal  0.819689  normal  0.0771917 
 
 
-
 
NC_011894  Mnod_1427  putative transcriptional regulator, Crp/Fnr family  28.34 
 
 
267 aa  79.7  0.00000000000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6056  Crp/FNR family transcriptional regulator  28.19 
 
 
241 aa  79.3  0.00000000000005  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3805  cyclic nucleotide-binding  30.53 
 
 
263 aa  79  0.00000000000007  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009429  Rsph17025_3486  putative signal transduction histidine kinase  29.9 
 
 
243 aa  78.6  0.00000000000009  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.173486 
 
 
-
 
NC_008254  Meso_2575  Crp/FNR family transcriptional regulator  32.47 
 
 
240 aa  77.4  0.0000000000002  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_2609  Crp/FNR family transcriptional regulator  31.32 
 
 
293 aa  77.4  0.0000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.325512  normal 
 
 
-
 
NC_009620  Smed_4822  cyclic nucleotide-binding protein  29.67 
 
 
243 aa  76.3  0.0000000000004  Sinorhizobium medicae WSM419  Bacteria  normal  0.379105  normal  0.123433 
 
 
-
 
NC_007778  RPB_4068  Crp/FNR family transcriptional regulator  30 
 
 
247 aa  75.9  0.0000000000006  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.936766  normal 
 
 
-
 
NC_007494  RSP_3616  Crp/FNR family transcriptional regulator  29.19 
 
 
243 aa  75.5  0.0000000000008  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0189  Crp/FNR family transcriptional regulator  28.57 
 
 
235 aa  75.1  0.0000000000009  Brucella ovis ATCC 25840  Bacteria  normal  0.338052  n/a   
 
 
-
 
NC_004310  BR0196  Crp/FNR family transcriptional regulator  28.57 
 
 
253 aa  75.1  0.000000000001  Brucella suis 1330  Bacteria  normal  0.0367027  n/a   
 
 
-
 
NC_008254  Meso_3865  Crp/FNR family transcriptional regulator  25.62 
 
 
252 aa  71.2  0.00000000001  Chelativorans sp. BNC1  Bacteria  normal  0.925805  n/a   
 
 
-
 
NC_007947  Mfla_1734  Crp/FNR family transcriptional regulator  27.23 
 
 
241 aa  68.9  0.00000000007  Methylobacillus flagellatus KT  Bacteria  normal  0.79675  hitchhiker  0.000773544 
 
 
-
 
NC_010505  Mrad2831_2447  cyclic nucleotide-binding protein  28.64 
 
 
255 aa  67.8  0.0000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009956  Dshi_3844  cyclic nucleotide-binding protein  25.77 
 
 
242 aa  66.2  0.0000000004  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_1854  CRP/FNR family transcriptional regulator  28.35 
 
 
250 aa  66.2  0.0000000005  Marinobacter aquaeolei VT8  Bacteria  normal  0.191124  n/a   
 
 
-
 
NC_011004  Rpal_1184  transcriptional regulator, Crp/Fnr family  27.18 
 
 
243 aa  66.2  0.0000000005  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_0490  CRP/FNR family transcriptional regulator  26.47 
 
 
256 aa  65.1  0.0000000009  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1377  Crp/FNR family transcriptional regulator  28.65 
 
 
239 aa  64.3  0.000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1357  Crp/Fnr family transcriptional regulator  28.12 
 
 
239 aa  64.3  0.000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2400  CRP/FNR family transcriptional regulator  27.46 
 
 
250 aa  64.3  0.000000002  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0375093 
 
 
-
 
NC_011004  Rpal_4713  transcriptional regulator, Crp/Fnr family  27.92 
 
 
239 aa  64.3  0.000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.557049  n/a   
 
 
-
 
NC_011988  Avi_5989  transcriptional regulator CRP family  27.12 
 
 
257 aa  63.2  0.000000004  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2201  transcriptional regulator  26.29 
 
 
262 aa  62.8  0.000000005  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.586423 
 
 
-
 
NC_013889  TK90_1862  transcriptional regulator, Crp/Fnr family  27.62 
 
 
250 aa  62  0.000000008  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0720375  normal  0.182435 
 
 
-
 
NC_011369  Rleg2_1000  transcriptional regulator, Crp/Fnr family  24.64 
 
 
250 aa  60.8  0.00000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.523077  normal  0.289991 
 
 
-
 
NC_007925  RPC_4039  Crp/FNR family transcriptional regulator  27.41 
 
 
239 aa  60.5  0.00000003  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.70749  normal 
 
 
-
 
NC_012791  Vapar_0997  transcriptional regulator, Crp/Fnr family  31.58 
 
 
230 aa  59.7  0.00000004  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_1153  transcriptional regulator, Crp/Fnr family  23.94 
 
 
250 aa  58.9  0.00000006  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3568  cyclic nucleotide-binding domain-containing protein  24.75 
 
 
242 aa  58.2  0.0000001  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_0660  transcriptional regulator  27.37 
 
 
249 aa  57.8  0.0000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_2705  cyclic nucleotide-binding protein  23.32 
 
 
249 aa  56.2  0.0000004  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_3269  CRP/FNR family transcriptional regulator  26.98 
 
 
230 aa  56.2  0.0000005  Salinispora tropica CNB-440  Bacteria  normal  0.883713  normal 
 
 
-
 
NC_009049  Rsph17029_2934  cyclic nucleotide-binding protein  24.24 
 
 
249 aa  55.8  0.0000006  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1275  Crp/Fnr family transcriptional regulator  24.24 
 
 
249 aa  55.5  0.0000007  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0946  Crp/FNR family transcriptional regulator  25.41 
 
 
253 aa  55.5  0.0000008  Methylobacterium sp. 4-46  Bacteria  normal  0.336903  normal 
 
 
-
 
NC_008752  Aave_4040  Crp/FNR family transcriptional regulator  27.36 
 
 
256 aa  54.7  0.000001  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.858211 
 
 
-
 
NC_009953  Sare_3499  Crp/FNR family transcriptional regulator  27.08 
 
 
230 aa  54.7  0.000001  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00506626 
 
 
-
 
NC_008781  Pnap_0532  cyclic nucleotide-binding protein  25 
 
 
276 aa  53.9  0.000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.053126  normal  0.207643 
 
 
-
 
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