More than 300 homologs were found in PanDaTox collection
for query gene Mnod_3167 on replicon NC_011894
Organism: Methylobacterium nodulans ORS 2060



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011894  Mnod_3167  transcriptional regulator, Crp/Fnr family  100 
 
 
307 aa  631  1e-180  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_4036  Crp/FNR family transcriptional regulator  80.99 
 
 
315 aa  410  1e-113  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_2990  transcriptional regulator, Crp/Fnr family  47.28 
 
 
244 aa  233  3e-60  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2763  cyclic nucleotide-binding  47.28 
 
 
244 aa  233  3e-60  Methylobacterium extorquens PA1  Bacteria  normal  0.746131  normal 
 
 
-
 
NC_010725  Mpop_2886  transcriptional regulator, Crp/Fnr family  46.41 
 
 
244 aa  230  2e-59  Methylobacterium populi BJ001  Bacteria  normal  0.473656  normal 
 
 
-
 
NC_009485  BBta_4270  CRP/FNR family transcriptional regulator  50.48 
 
 
225 aa  216  4e-55  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0893417 
 
 
-
 
NC_011894  Mnod_3758  transcriptional regulator, Crp/Fnr family  46.12 
 
 
247 aa  215  9e-55  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6209  Crp/FNR family transcriptional regulator  47.6 
 
 
247 aa  213  3.9999999999999995e-54  Methylobacterium sp. 4-46  Bacteria  normal  0.0102902  normal  0.673418 
 
 
-
 
NC_011894  Mnod_4497  transcriptional regulator, Crp/Fnr family  49.12 
 
 
255 aa  208  1e-52  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0140276  n/a   
 
 
-
 
NC_010511  M446_4564  Crp/FNR family transcriptional regulator  47.12 
 
 
257 aa  201  9.999999999999999e-51  Methylobacterium sp. 4-46  Bacteria  normal  decreased coverage  0.00106309 
 
 
-
 
NC_011894  Mnod_7477  transcriptional regulator, Crp/Fnr family  43.8 
 
 
246 aa  200  1.9999999999999998e-50  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.403111  n/a   
 
 
-
 
NC_010511  M446_6403  Crp/FNR family transcriptional regulator  47.41 
 
 
246 aa  199  6e-50  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_7493  transcriptional regulator, Crp/Fnr family  44.21 
 
 
246 aa  197  2.0000000000000003e-49  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_1359  Crp/FNR family transcriptional regulator  45.53 
 
 
236 aa  193  4e-48  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.342582  normal  0.0135439 
 
 
-
 
NC_011004  Rpal_2367  putative transcriptional regulator, Crp/Fnr family  41.05 
 
 
255 aa  179  8e-44  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0615204  n/a   
 
 
-
 
NC_011757  Mchl_0060  transcriptional regulator, Crp/Fnr family  40.93 
 
 
384 aa  177  2e-43  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0783  cyclic nucleotide-binding  40.51 
 
 
376 aa  177  3e-43  Methylobacterium extorquens PA1  Bacteria  normal  0.0359827  normal 
 
 
-
 
NC_011757  Mchl_3385  transcriptional regulator, Crp/Fnr family  40.51 
 
 
384 aa  176  4e-43  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1439  Crp/FNR family transcriptional regulator  41.56 
 
 
243 aa  176  5e-43  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.000118444 
 
 
-
 
NC_010172  Mext_0073  cyclic nucleotide-binding  40.53 
 
 
255 aa  172  5e-42  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_0133  transcriptional regulator, Crp/Fnr family  40.52 
 
 
268 aa  171  2e-41  Methylobacterium populi BJ001  Bacteria  normal  0.564261  normal  0.0379159 
 
 
-
 
NC_010725  Mpop_5417  transcriptional regulator, Crp/Fnr family  38.67 
 
 
298 aa  166  2.9999999999999998e-40  Methylobacterium populi BJ001  Bacteria  normal  0.36754  normal 
 
 
-
 
NC_010505  Mrad2831_2433  Crp/FNR family transcriptional regulator  40.25 
 
 
247 aa  166  5.9999999999999996e-40  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.168738  normal  0.817452 
 
 
-
 
NC_011757  Mchl_3389  transcriptional regulator, Crp/Fnr family  39.22 
 
 
248 aa  164  1.0000000000000001e-39  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1986  transcriptional regulator, Crp/Fnr family  38.17 
 
 
259 aa  161  1e-38  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2024  cyclic nucleotide-binding  37.34 
 
 
259 aa  157  2e-37  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.996332 
 
 
-
 
NC_011893  Mnod_8765  putative transcriptional regulator, Crp/Fnr family  37 
 
 
244 aa  157  2e-37  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.474033  n/a   
 
 
-
 
NC_011757  Mchl_2301  transcriptional regulator, Crp/Fnr family  37.34 
 
 
259 aa  157  2e-37  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.161686 
 
 
-
 
NC_011894  Mnod_6130  putative transcriptional regulator, Crp/Fnr family  37 
 
 
244 aa  156  4e-37  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_5361  transcriptional regulator, Crp/Fnr family  37.34 
 
 
299 aa  156  4e-37  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_4876  cyclic nucleotide-binding  37.34 
 
 
317 aa  154  1e-36  Methylobacterium extorquens PA1  Bacteria  normal  0.155933  normal 
 
 
-
 
NC_010725  Mpop_3862  transcriptional regulator, Crp/Fnr family  36.68 
 
 
249 aa  153  2.9999999999999998e-36  Methylobacterium populi BJ001  Bacteria  normal  0.582037  normal  0.123136 
 
 
-
 
NC_010505  Mrad2831_4786  cyclic nucleotide-binding protein  36.68 
 
 
243 aa  152  5.9999999999999996e-36  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010510  Mrad2831_6249  Crp/FNR family transcriptional regulator  37.78 
 
 
281 aa  152  8e-36  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.999867 
 
 
-
 
NC_010511  M446_1835  cyclic nucleotide-binding protein  38.46 
 
 
281 aa  149  6e-35  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3480  cyclic nucleotide-binding  38.61 
 
 
249 aa  145  1e-33  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3788  transcriptional regulator, Crp/Fnr family  38.61 
 
 
249 aa  145  1e-33  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.371562 
 
 
-
 
NC_010505  Mrad2831_2447  cyclic nucleotide-binding protein  38.3 
 
 
255 aa  145  1e-33  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2950  Crp/FNR family transcriptional regulator  34.58 
 
 
250 aa  143  3e-33  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.908761  normal 
 
 
-
 
NC_012850  Rleg_2944  transcriptional regulator, Crp/Fnr family  34.55 
 
 
246 aa  140  1.9999999999999998e-32  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0738845  normal 
 
 
-
 
NC_011894  Mnod_1991  transcriptional regulator, Crp/Fnr family  36 
 
 
249 aa  140  1.9999999999999998e-32  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.250977  n/a   
 
 
-
 
NC_010725  Mpop_3832  transcriptional regulator, Crp/Fnr family  35.96 
 
 
245 aa  140  3e-32  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1230  Crp/FNR family transcriptional regulator  36.89 
 
 
263 aa  140  3e-32  Methylobacterium sp. 4-46  Bacteria  normal  0.583862  normal 
 
 
-
 
NC_009511  Swit_0953  CRP/FNR family transcriptional regulator  34.2 
 
 
254 aa  137  2e-31  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1441  Crp/FNR family transcriptional regulator  35.64 
 
 
259 aa  136  4e-31  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.00010652 
 
 
-
 
NC_010172  Mext_0772  cyclic nucleotide-binding  32.77 
 
 
254 aa  136  5e-31  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_1485  cyclic nucleotide-binding protein  35.05 
 
 
244 aa  135  8e-31  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_2686  transcriptional regulator, Crp/Fnr family  33.33 
 
 
239 aa  134  1.9999999999999998e-30  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.038663  normal 
 
 
-
 
NC_011004  Rpal_3741  transcriptional regulator, Crp/Fnr family  34.04 
 
 
242 aa  126  4.0000000000000003e-28  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0859  CRP/FNR family transcriptional regulator  33.04 
 
 
234 aa  125  7e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0477074 
 
 
-
 
NC_011894  Mnod_1427  putative transcriptional regulator, Crp/Fnr family  31.86 
 
 
267 aa  122  9.999999999999999e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_2609  Crp/FNR family transcriptional regulator  33.9 
 
 
293 aa  121  1.9999999999999998e-26  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.325512  normal 
 
 
-
 
NC_011988  Avi_5989  transcriptional regulator CRP family  35.94 
 
 
257 aa  120  3e-26  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2201  transcriptional regulator  38.46 
 
 
262 aa  115  1.0000000000000001e-24  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.586423 
 
 
-
 
NC_009485  BBta_2391  CRP/FNR family transcriptional regulator  30.13 
 
 
274 aa  115  1.0000000000000001e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_1000  transcriptional regulator, Crp/Fnr family  35.63 
 
 
250 aa  113  5e-24  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.523077  normal  0.289991 
 
 
-
 
NC_008752  Aave_4040  Crp/FNR family transcriptional regulator  38.46 
 
 
256 aa  112  7.000000000000001e-24  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.858211 
 
 
-
 
NC_010172  Mext_3499  CRP/FNR family transcriptional regulator  31.42 
 
 
286 aa  111  1.0000000000000001e-23  Methylobacterium extorquens PA1  Bacteria  normal  0.519814  normal 
 
 
-
 
NC_009667  Oant_0266  CRP/FNR family transcriptional regulator  30.04 
 
 
253 aa  110  2.0000000000000002e-23  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4068  Crp/FNR family transcriptional regulator  30.34 
 
 
247 aa  111  2.0000000000000002e-23  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.936766  normal 
 
 
-
 
NC_008254  Meso_3865  Crp/FNR family transcriptional regulator  35.32 
 
 
252 aa  111  2.0000000000000002e-23  Chelativorans sp. BNC1  Bacteria  normal  0.925805  n/a   
 
 
-
 
NC_007947  Mfla_1734  Crp/FNR family transcriptional regulator  32.37 
 
 
241 aa  110  3e-23  Methylobacillus flagellatus KT  Bacteria  normal  0.79675  hitchhiker  0.000773544 
 
 
-
 
NC_009429  Rsph17025_3486  putative signal transduction histidine kinase  31.93 
 
 
243 aa  110  3e-23  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.173486 
 
 
-
 
NC_012850  Rleg_1153  transcriptional regulator, Crp/Fnr family  34.48 
 
 
250 aa  110  4.0000000000000004e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009956  Dshi_3844  cyclic nucleotide-binding protein  36.51 
 
 
242 aa  108  1e-22  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3805  cyclic nucleotide-binding  29.69 
 
 
263 aa  107  3e-22  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_0955  CRP/FNR family transcriptional regulator  30.36 
 
 
226 aa  107  3e-22  Sphingomonas wittichii RW1  Bacteria  normal  0.869769  normal 
 
 
-
 
NC_009505  BOV_0189  Crp/FNR family transcriptional regulator  31.67 
 
 
235 aa  107  3e-22  Brucella ovis ATCC 25840  Bacteria  normal  0.338052  n/a   
 
 
-
 
NC_007494  RSP_3616  Crp/FNR family transcriptional regulator  30.64 
 
 
243 aa  106  5e-22  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1787  cyclic nucleotide-binding domain-containing protein  31.84 
 
 
263 aa  106  5e-22  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6056  Crp/FNR family transcriptional regulator  29.96 
 
 
241 aa  106  5e-22  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_0532  cyclic nucleotide-binding protein  35.79 
 
 
276 aa  106  5e-22  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.053126  normal  0.207643 
 
 
-
 
NC_011894  Mnod_5597  putative transcriptional regulator, Crp/Fnr family  31.5 
 
 
246 aa  105  7e-22  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0675352  n/a   
 
 
-
 
NC_004310  BR0196  Crp/FNR family transcriptional regulator  31.67 
 
 
253 aa  105  1e-21  Brucella suis 1330  Bacteria  normal  0.0367027  n/a   
 
 
-
 
NC_004311  BRA0414  Crp/FNR family transcriptional regulator  31.77 
 
 
252 aa  105  1e-21  Brucella suis 1330  Bacteria  normal  0.766284  n/a   
 
 
-
 
NC_009504  BOV_A0357  Crp/FNR family transcriptional regulator  31.77 
 
 
252 aa  105  1e-21  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2400  CRP/FNR family transcriptional regulator  34.21 
 
 
250 aa  104  2e-21  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0375093 
 
 
-
 
NC_009049  Rsph17029_0604  cyclic nucleotide-binding protein  30.28 
 
 
246 aa  103  5e-21  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1953  Crp/FNR family transcriptional regulator  31.79 
 
 
246 aa  102  6e-21  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_1184  transcriptional regulator, Crp/Fnr family  29.18 
 
 
243 aa  102  8e-21  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3367  CRP/FNR family transcriptional regulator  29.82 
 
 
252 aa  100  3e-20  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.184948  n/a   
 
 
-
 
NC_007794  Saro_0490  CRP/FNR family transcriptional regulator  35.33 
 
 
256 aa  98.6  1e-19  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0983  Crp/FNR family transcriptional regulator  26.96 
 
 
245 aa  97.4  3e-19  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3858  Crp/FNR family transcriptional regulator  30.13 
 
 
248 aa  96.3  6e-19  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2575  Crp/FNR family transcriptional regulator  35.14 
 
 
240 aa  95.1  1e-18  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_2705  cyclic nucleotide-binding protein  31.77 
 
 
249 aa  93.2  5e-18  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_1854  CRP/FNR family transcriptional regulator  31.4 
 
 
250 aa  93.2  5e-18  Marinobacter aquaeolei VT8  Bacteria  normal  0.191124  n/a   
 
 
-
 
NC_008686  Pden_2108  CRP/FNR family transcriptional regulator  29.47 
 
 
243 aa  92.8  7e-18  Paracoccus denitrificans PD1222  Bacteria  normal  0.819689  normal  0.0771917 
 
 
-
 
NC_012791  Vapar_0997  transcriptional regulator, Crp/Fnr family  33.16 
 
 
230 aa  92.4  9e-18  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4822  cyclic nucleotide-binding protein  29.28 
 
 
243 aa  92  1e-17  Sinorhizobium medicae WSM419  Bacteria  normal  0.379105  normal  0.123433 
 
 
-
 
NC_013889  TK90_1862  transcriptional regulator, Crp/Fnr family  29.34 
 
 
250 aa  90.9  2e-17  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0720375  normal  0.182435 
 
 
-
 
NC_007493  RSP_1275  Crp/Fnr family transcriptional regulator  29.95 
 
 
249 aa  90.1  4e-17  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2934  cyclic nucleotide-binding protein  32.56 
 
 
249 aa  87.4  3e-16  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_0447  transcriptional regulator  32.18 
 
 
262 aa  84.7  0.000000000000002  Dinoroseobacter shibae DFL 12  Bacteria  decreased coverage  0.00494896  normal 
 
 
-
 
NC_007493  RSP_0698  Crp-Fnr regulatory protein (FnrL)  28.77 
 
 
248 aa  83.6  0.000000000000003  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_2581  Crp/FNR family transcriptional regulator  30.14 
 
 
231 aa  84  0.000000000000003  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.658135  n/a   
 
 
-
 
NC_009049  Rsph17029_2353  CRP/FNR family transcriptional regulator  28.77 
 
 
248 aa  83.6  0.000000000000003  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.689366  normal  0.139893 
 
 
-
 
NC_009428  Rsph17025_0532  CRP/FNR family transcriptional regulator  28.77 
 
 
248 aa  83.2  0.000000000000006  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.283437 
 
 
-
 
NC_010172  Mext_1357  cyclic nucleotide-binding  29.02 
 
 
250 aa  81.3  0.00000000000002  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.395788 
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  31.64 
 
 
262 aa  80.1  0.00000000000004  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
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