More than 300 homologs were found in PanDaTox collection
for query gene Mnod_0038 on replicon NC_011894
Organism: Methylobacterium nodulans ORS 2060



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009719  Plav_1625  methylmalonyl-CoA mutase, large subunit  68.06 
 
 
667 aa  877    Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0961  methylmalonyl-CoA mutase  68.46 
 
 
652 aa  846    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A3062  methylmalonyl-CoA mutase  69.25 
 
 
671 aa  916    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_0038  methylmalonyl-CoA mutase, large subunit  100 
 
 
690 aa  1405    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.579469  n/a   
 
 
-
 
NC_007777  Francci3_2169  methylmalonyl-CoA mutase  62.98 
 
 
692 aa  832    Frankia sp. CcI3  Bacteria  normal  0.485789  normal  0.751366 
 
 
-
 
NC_011757  Mchl_0334  methylmalonyl-CoA mutase, large subunit  87.99 
 
 
688 aa  1194    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_1034  methylmalonyl-CoA mutase, large subunit  65.44 
 
 
666 aa  852    Frankia sp. EAN1pec  Bacteria  normal  0.488774  normal  0.762762 
 
 
-
 
NC_007802  Jann_0797  methylmalonyl-CoA mutase  66.72 
 
 
654 aa  873    Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4193  methylmalonyl-CoA mutase, large subunit  60.8 
 
 
670 aa  760    Conexibacter woesei DSM 14684  Bacteria  normal  0.669168  normal  0.90036 
 
 
-
 
NC_009952  Dshi_2855  methylmalonyl-CoA mutase  67.23 
 
 
657 aa  880    Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_0366  methylmalonyl-CoA mutase, large subunit  88.6 
 
 
688 aa  1199    Methylobacterium populi BJ001  Bacteria  normal  0.560359  normal 
 
 
-
 
NC_009720  Xaut_1197  methylmalonyl-CoA mutase, large subunit  71.8 
 
 
657 aa  925    Xanthobacter autotrophicus Py2  Bacteria  normal  0.282186  normal 
 
 
-
 
NC_009953  Sare_4003  methylmalonyl-CoA mutase, large subunit  61.53 
 
 
685 aa  778    Salinispora arenicola CNS-205  Bacteria  normal  0.446619  hitchhiker  0.000372138 
 
 
-
 
NC_009428  Rsph17025_3008  methylmalonyl-CoA mutase, large subunit  68.77 
 
 
652 aa  862    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.842553  normal  0.248307 
 
 
-
 
NC_008043  TM1040_3106  methylmalonyl-CoA mutase  68.36 
 
 
661 aa  895    Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_0836  methylmalonyl-CoA mutase, large subunit  64.71 
 
 
662 aa  838    Caulobacter sp. K31  Bacteria  normal  0.733808  normal  0.66979 
 
 
-
 
NC_013131  Caci_1226  methylmalonyl-CoA mutase, large subunit  64.04 
 
 
672 aa  825    Catenulispora acidiphila DSM 44928  Bacteria  normal  0.6728  normal  0.0673448 
 
 
-
 
NC_010172  Mext_0290  methylmalonyl-CoA mutase, large subunit  88.15 
 
 
688 aa  1195    Methylobacterium extorquens PA1  Bacteria  normal  normal  0.515512 
 
 
-
 
NC_008687  Pden_3875  methylmalonyl-CoA mutase, large subunit  68.05 
 
 
688 aa  858    Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1772  methylmalonyl-CoA mutase  63.41 
 
 
680 aa  833    Nocardioides sp. JS614  Bacteria  normal  0.292142  n/a   
 
 
-
 
NC_013757  Gobs_4128  methylmalonyl-CoA mutase, large subunit  62.88 
 
 
667 aa  799    Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_1106  methylmalonyl-CoA mutase, large subunit  87.43 
 
 
680 aa  1197    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_013124  Afer_0223  methylmalonyl-CoA mutase, large subunit  58.31 
 
 
647 aa  689    Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.784456  n/a   
 
 
-
 
NC_009049  Rsph17029_2621  methylmalonyl-CoA mutase, large subunit  68.31 
 
 
652 aa  845    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0036  methylmalonyl-CoA mutase, large subunit  94.96 
 
 
675 aa  1307    Methylobacterium sp. 4-46  Bacteria  normal  0.0637775  decreased coverage  0.00272797 
 
 
-
 
NC_009380  Strop_3621  methylmalonyl-CoA mutase, large subunit  61.53 
 
 
668 aa  763    Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_1320  methylmalonyl-CoA mutase  39.91 
 
 
722 aa  427  1e-118  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_0079  methylmalonyl-CoA mutase  38.5 
 
 
706 aa  428  1e-118  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.373309  n/a   
 
 
-
 
NC_007512  Plut_1292  methylmalonyl-CoA mutase  38.26 
 
 
714 aa  422  1e-117  Chlorobium luteolum DSM 273  Bacteria  normal  normal  0.816153 
 
 
-
 
NC_010803  Clim_0868  methylmalonyl-CoA mutase  37.21 
 
 
715 aa  412  1e-113  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_1173  methylmalonyl-CoA mutase, large subunit  37.48 
 
 
1106 aa  410  1e-113  Chlorobium phaeobacteroides BS1  Bacteria  normal  decreased coverage  0.00593374 
 
 
-
 
NC_011060  Ppha_1167  methylmalonyl-CoA mutase  36.56 
 
 
712 aa  412  1e-113  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.169366  n/a   
 
 
-
 
NC_009719  Plav_1702  methylmalonyl-CoA mutase  38.17 
 
 
718 aa  408  1.0000000000000001e-112  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.0321557 
 
 
-
 
NC_010571  Oter_3304  methylmalonyl-CoA mutase, large subunit  38.43 
 
 
719 aa  407  1.0000000000000001e-112  Opitutus terrae PB90-1  Bacteria  decreased coverage  0.00679496  normal  0.683271 
 
 
-
 
NC_009667  Oant_2001  methylmalonyl-CoA mutase  36.18 
 
 
714 aa  407  1.0000000000000001e-112  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR1190  methylmalonyl-CoA mutase  36.67 
 
 
712 aa  405  1e-111  Brucella suis 1330  Bacteria  normal  0.942727  n/a   
 
 
-
 
NC_007514  Cag_1223  methylmalonyl-CoA mutase  36.69 
 
 
712 aa  402  1e-111  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_0014  methylmalonyl-CoA mutase  36.33 
 
 
711 aa  403  1e-111  Flavobacterium johnsoniae UW101  Bacteria  normal  0.185174  n/a   
 
 
-
 
NC_007794  Saro_0811  methylmalonyl-CoA mutase  37.54 
 
 
714 aa  404  1e-111  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.251875  n/a   
 
 
-
 
NC_009523  RoseRS_0545  methylmalonyl-CoA mutase  38.8 
 
 
740 aa  402  1e-111  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_3260  methylmalonyl-CoA mutase, large subunit  37.58 
 
 
713 aa  403  1e-111  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_2294  methylmalonyl-CoA mutase  37.74 
 
 
731 aa  403  1e-111  Geobacillus sp. WCH70  Bacteria  normal  0.895743  n/a   
 
 
-
 
NC_009767  Rcas_3872  methylmalonyl-CoA mutase  38.49 
 
 
740 aa  399  9.999999999999999e-111  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.231489  normal  0.125312 
 
 
-
 
NC_007925  RPC_1760  methylmalonyl-CoA mutase  37.36 
 
 
718 aa  402  9.999999999999999e-111  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.226069 
 
 
-
 
NC_008254  Meso_0856  methylmalonyl-CoA mutase  36.38 
 
 
714 aa  400  9.999999999999999e-111  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1164  methylmalonyl-CoA mutase  36.88 
 
 
713 aa  400  9.999999999999999e-111  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.197015  n/a   
 
 
-
 
NC_014230  CA2559_07125  methylmalonyl-CoA mutase  36.59 
 
 
707 aa  402  9.999999999999999e-111  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1920  methylmalonyl-CoA mutase large subunit  37.54 
 
 
720 aa  401  9.999999999999999e-111  Thermobispora bispora DSM 43833  Bacteria  normal  0.0552222  normal  0.617547 
 
 
-
 
NC_013037  Dfer_5804  methylmalonyl-CoA mutase  36.56 
 
 
972 aa  396  1e-109  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.256305  normal  0.17905 
 
 
-
 
NC_007406  Nwi_2238  methylmalonyl-CoA mutase  36.99 
 
 
722 aa  397  1e-109  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_2192  methylmalonyl-CoA mutase  36.19 
 
 
709 aa  396  1e-109  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.172259  n/a   
 
 
-
 
NC_007778  RPB_3538  methylmalonyl-CoA mutase  37.48 
 
 
736 aa  397  1e-109  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.162308  normal  0.256268 
 
 
-
 
NC_009616  Tmel_1860  methylmalonyl-CoA mutase, large subunit  43.2 
 
 
559 aa  397  1e-109  Thermosipho melanesiensis BI429  Bacteria  decreased coverage  0.0000937746  n/a   
 
 
-
 
NC_008347  Mmar10_1119  methylmalonyl-CoA mutase  37.29 
 
 
716 aa  397  1e-109  Maricaulis maris MCS10  Bacteria  normal  normal  0.262731 
 
 
-
 
NC_011992  Dtpsy_1849  methylmalonyl-CoA mutase  37.64 
 
 
720 aa  399  1e-109  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_3021  methylmalonyl-CoA mutase  37.26 
 
 
718 aa  398  1e-109  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.954275 
 
 
-
 
NC_009049  Rsph17029_0867  methylmalonyl-CoA mutase  36.19 
 
 
709 aa  397  1e-109  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.134958  normal 
 
 
-
 
NC_009511  Swit_2891  methylmalonyl-CoA mutase  36.79 
 
 
716 aa  397  1e-109  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.17991 
 
 
-
 
NC_013411  GYMC61_0279  methylmalonyl-CoA mutase  37.48 
 
 
731 aa  398  1e-109  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011059  Paes_0875  methylmalonyl-CoA mutase, large subunit  36.06 
 
 
1081 aa  395  1e-108  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.036821 
 
 
-
 
NC_009801  EcE24377A_3244  methylmalonyl-CoA mutase  37.31 
 
 
714 aa  392  1e-108  Escherichia coli E24377A  Bacteria  normal  0.98625  n/a   
 
 
-
 
NC_010320  Teth514_1855  methylmalonyl-CoA mutase, large subunit  42.48 
 
 
560 aa  393  1e-108  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3188  Methylmalonyl-CoA mutase  38.64 
 
 
725 aa  394  1e-108  Streptosporangium roseum DSM 43021  Bacteria  normal  0.36577  normal  0.670701 
 
 
-
 
NC_011353  ECH74115_4213  methylmalonyl-CoA mutase  37.46 
 
 
714 aa  395  1e-108  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_2638  methylmalonyl-CoA mutase  36.69 
 
 
720 aa  394  1e-108  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_2300  methylmalonyl-CoA mutase  36.91 
 
 
709 aa  395  1e-108  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A3075  methylmalonyl-CoA mutase  37.46 
 
 
714 aa  394  1e-108  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011371  Rleg2_6511  methylmalonyl-CoA mutase  38.32 
 
 
712 aa  394  1e-108  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_2040  methylmalonyl-CoA mutase  37.32 
 
 
720 aa  395  1e-108  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A1014  methylmalonyl-CoA mutase  37.8 
 
 
719 aa  393  1e-108  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.856859 
 
 
-
 
NC_010655  Amuc_1983  methylmalonyl-CoA mutase  38.11 
 
 
714 aa  393  1e-108  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  0.774356  normal  0.0211504 
 
 
-
 
CP001509  ECD_02748  methylmalonyl-CoA mutase  37.31 
 
 
714 aa  392  1e-107  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0776  methylmalonyl-CoA mutase, large subunit  37.16 
 
 
714 aa  390  1e-107  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4237  methylmalonyl-CoA mutase  37.44 
 
 
712 aa  390  1e-107  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_4373  methylmalonyl-CoA mutase, large subunit  37.67 
 
 
735 aa  389  1e-107  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_02711  hypothetical protein  37.31 
 
 
714 aa  392  1e-107  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0793  methylmalonyl-CoA mutase  37.31 
 
 
714 aa  392  1e-107  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_6640  methylmalonyl-CoA mutase, large subunit  35.74 
 
 
724 aa  390  1e-107  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.70273 
 
 
-
 
NC_008752  Aave_2510  methylmalonyl-CoA mutase  37.17 
 
 
722 aa  390  1e-107  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.178476 
 
 
-
 
NC_008781  Pnap_2383  methylmalonyl-CoA mutase  36.44 
 
 
718 aa  390  1e-107  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_05680  methylmalonyl-CoA mutase  37 
 
 
726 aa  390  1e-107  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_3053  methylmalonyl-CoA mutase  37 
 
 
714 aa  390  1e-107  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_22170  methylmalonyl-CoA mutase  37.17 
 
 
754 aa  391  1e-107  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.366718  normal  0.398515 
 
 
-
 
NC_002950  PG1657  methylmalonyl-CoA mutase  36.12 
 
 
715 aa  386  1e-106  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.387473 
 
 
-
 
NC_009675  Anae109_0281  methylmalonyl-CoA mutase, large subunit  43.38 
 
 
549 aa  387  1e-106  Anaeromyxobacter sp. Fw109-5  Bacteria  decreased coverage  0.000219849  normal  0.200381 
 
 
-
 
NC_011666  Msil_3784  methylmalonyl-CoA mutase, large subunit  39.81 
 
 
736 aa  387  1e-106  Methylocella silvestris BL2  Bacteria  n/a    normal  0.362344 
 
 
-
 
NC_011988  Avi_5687  methylmalonyl-CoA mutase  36.85 
 
 
712 aa  387  1e-106  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1927  methylmalonyl-CoA mutase  36.85 
 
 
719 aa  386  1e-106  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.273596  normal  0.727114 
 
 
-
 
NC_013522  Taci_0288  methylmalonyl-CoA mutase, large subunit  43.03 
 
 
559 aa  388  1e-106  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_2127  methylmalonyl-CoA mutase  37.42 
 
 
720 aa  388  1e-106  Variovorax paradoxus S110  Bacteria  normal  0.063815  n/a   
 
 
-
 
NC_013093  Amir_6418  methylmalonyl-CoA mutase  37.95 
 
 
729 aa  388  1e-106  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_2039  methylmalonyl-CoA mutase  36.05 
 
 
719 aa  386  1e-106  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3753  methylmalonyl-CoA mutase  37.32 
 
 
738 aa  383  1e-105  Delftia acidovorans SPH-1  Bacteria  normal  0.801598  normal  0.879758 
 
 
-
 
NC_010511  M446_3042  methylmalonyl-CoA mutase  37.6 
 
 
720 aa  383  1e-105  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.057217 
 
 
-
 
NC_013441  Gbro_2420  methylmalonyl-CoA mutase, large subunit  35.56 
 
 
763 aa  383  1e-105  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_3398  methylmalonyl-CoA mutase  36.78 
 
 
731 aa  385  1e-105  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.526303  normal 
 
 
-
 
NC_009718  Fnod_1752  methylmalonyl-CoA mutase, large subunit  41.72 
 
 
554 aa  383  1e-105  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_4573  methylmalonyl-CoA mutase  38.23 
 
 
720 aa  384  1e-105  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_1865  methylmalonyl-CoA mutase  37.07 
 
 
661 aa  379  1e-104  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1221  methylmalonyl-CoA mutase  38.24 
 
 
715 aa  380  1e-104  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.584735  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>