More than 300 homologs were found in PanDaTox collection
for query gene Mext_3348 on replicon NC_010172
Organism: Methylobacterium extorquens PA1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010172  Mext_3348  cyclic nucleotide-binding  100 
 
 
254 aa  507  1e-143  Methylobacterium extorquens PA1  Bacteria  normal  0.181039  normal 
 
 
-
 
NC_011757  Mchl_3673  transcriptional regulator, Crp/Fnr family  99.21 
 
 
254 aa  504  9.999999999999999e-143  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.43296  normal 
 
 
-
 
NC_010725  Mpop_4187  transcriptional regulator, Crp/Fnr family  94.88 
 
 
254 aa  485  1e-136  Methylobacterium populi BJ001  Bacteria  normal  0.338954  normal 
 
 
-
 
NC_009485  BBta_4881  putative cyclic-AMP receptor-like protein  60.61 
 
 
281 aa  290  2e-77  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.353478  normal  0.139273 
 
 
-
 
NC_007406  Nwi_0675  cyclic nucleotide-binding protein  59.83 
 
 
240 aa  281  7.000000000000001e-75  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.35129  normal  0.370797 
 
 
-
 
NC_010510  Mrad2831_6152  Crp/FNR family transcriptional regulator  49.33 
 
 
256 aa  222  4e-57  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1475  Crp/FNR family transcriptional regulator  48.57 
 
 
260 aa  217  1e-55  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.796858 
 
 
-
 
NC_011757  Mchl_4199  cyclic nucleotide-binding protein  47.27 
 
 
260 aa  211  1e-53  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010510  Mrad2831_6158  cyclic nucleotide-binding protein  48.2 
 
 
251 aa  210  2e-53  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_2083  CRP/FNR family transcriptional regulator  48.32 
 
 
258 aa  207  1e-52  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.193038 
 
 
-
 
NC_007778  RPB_1486  Crp/FNR family transcriptional regulator  37.21 
 
 
240 aa  112  8.000000000000001e-24  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  27 
 
 
247 aa  104  2e-21  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0860  Crp/FNR family transcriptional regulator  30.29 
 
 
234 aa  100  2e-20  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.693979  n/a   
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  29.63 
 
 
229 aa  95.9  6e-19  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  28.72 
 
 
225 aa  95.1  9e-19  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  30.69 
 
 
225 aa  94  2e-18  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  31.05 
 
 
228 aa  93.6  3e-18  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  25.26 
 
 
227 aa  92  9e-18  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_22000  transcriptional regulator, Crp/Fnr family  30.19 
 
 
235 aa  91.3  1e-17  Azotobacter vinelandii DJ  Bacteria  normal  0.457493  n/a   
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  27.23 
 
 
226 aa  91.3  1e-17  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_013385  Adeg_1955  transcriptional regulator, Crp/Fnr family  31.25 
 
 
229 aa  90.5  2e-17  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  27.98 
 
 
225 aa  89  7e-17  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_009253  Dred_1262  CRP/FNR family transcriptional regulator  28.5 
 
 
222 aa  89  8e-17  Desulfotomaculum reducens MI-1  Bacteria  normal  0.247212  n/a   
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  27.98 
 
 
225 aa  88.6  8e-17  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  25.47 
 
 
229 aa  88.2  1e-16  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_2081  transcriptional regulator, Crp/Fnr family  27.43 
 
 
229 aa  87.4  2e-16  Haliangium ochraceum DSM 14365  Bacteria  normal  0.264181  normal 
 
 
-
 
NC_010816  BLD_0979  cAMP-binding protein  27.75 
 
 
239 aa  87.4  2e-16  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  30.04 
 
 
251 aa  87  3e-16  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  25.29 
 
 
239 aa  85.9  6e-16  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_013132  Cpin_0678  transcriptional regulator, Crp/Fnr family  25.12 
 
 
236 aa  85.9  6e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236133  normal 
 
 
-
 
NC_010424  Daud_0783  CRP/FNR family transcriptional regulator  29.19 
 
 
217 aa  85.9  6e-16  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  24.52 
 
 
225 aa  84.3  0.000000000000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_013093  Amir_0253  transcriptional regulator, Crp/Fnr family  26.89 
 
 
224 aa  84.7  0.000000000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  27.11 
 
 
228 aa  84  0.000000000000002  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  28.04 
 
 
231 aa  84.3  0.000000000000002  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_013235  Namu_0718  transcriptional regulator, Crp/Fnr family  29.11 
 
 
224 aa  84  0.000000000000002  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_1482  CRP/FNR family transcriptional regulator  28.57 
 
 
235 aa  84  0.000000000000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000000238682  n/a   
 
 
-
 
NC_011830  Dhaf_3158  transcriptional regulator, Crp/Fnr family  25.47 
 
 
223 aa  84  0.000000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  25.82 
 
 
225 aa  84  0.000000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_1859  transcriptional regulator, Crp/Fnr family  27.72 
 
 
220 aa  84  0.000000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_4099  Crp/FNR family transcriptional regulator  29.61 
 
 
237 aa  83.6  0.000000000000003  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00000000655046 
 
 
-
 
NC_013721  HMPREF0424_0303  cyclic nucleotide-binding domain protein  28.5 
 
 
236 aa  83.6  0.000000000000003  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.232206 
 
 
-
 
NC_014158  Tpau_3932  transcriptional regulator, Crp/Fnr family  27.7 
 
 
224 aa  83.6  0.000000000000003  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.571672  n/a   
 
 
-
 
NC_010814  Glov_0629  transcriptional regulator, Crp/Fnr family  29.58 
 
 
230 aa  83.2  0.000000000000003  Geobacter lovleyi SZ  Bacteria  decreased coverage  0.0000285446  n/a   
 
 
-
 
NC_010815  Glov_3725  transcriptional regulator, Crp/Fnr family  28.14 
 
 
237 aa  83.6  0.000000000000003  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.0054318  normal  0.342144 
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  26.6 
 
 
226 aa  82.8  0.000000000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  26.98 
 
 
228 aa  82.4  0.000000000000006  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  24.88 
 
 
241 aa  82.4  0.000000000000007  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1944  transcriptional regulator, Crp/Fnr family  29.95 
 
 
227 aa  82  0.000000000000009  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0976  transcriptional regulator, Crp/Fnr family  30.24 
 
 
258 aa  81.3  0.00000000000001  Acidovorax ebreus TPSY  Bacteria  normal  0.859751  n/a   
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  28.37 
 
 
226 aa  81.6  0.00000000000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  23.2 
 
 
225 aa  81.6  0.00000000000001  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_2928  transcriptional regulator, Crp/Fnr family  25.68 
 
 
232 aa  81.6  0.00000000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.39759 
 
 
-
 
NC_008782  Ajs_1058  CRP/FNR family transcriptional regulator  30.24 
 
 
258 aa  81.3  0.00000000000001  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  22.79 
 
 
227 aa  80.5  0.00000000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_008146  Mmcs_4818  Crp/FNR family transcriptional regulator  27.23 
 
 
224 aa  80.5  0.00000000000002  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_5205  Crp/FNR family transcriptional regulator  27.23 
 
 
224 aa  80.5  0.00000000000002  Mycobacterium sp. JLS  Bacteria  normal  0.703662  hitchhiker  0.000819508 
 
 
-
 
NC_008705  Mkms_4904  Crp/FNR family transcriptional regulator  27.23 
 
 
224 aa  80.5  0.00000000000002  Mycobacterium sp. KMS  Bacteria  normal  normal  0.385516 
 
 
-
 
NC_008726  Mvan_5435  CRP/FNR family transcriptional regulator  27.23 
 
 
224 aa  80.5  0.00000000000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.397858 
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  24.87 
 
 
227 aa  80.9  0.00000000000002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  24.87 
 
 
227 aa  80.9  0.00000000000002  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  25.84 
 
 
248 aa  80.1  0.00000000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  28.85 
 
 
226 aa  80.1  0.00000000000003  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  25.58 
 
 
227 aa  80.5  0.00000000000003  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_13707  Cpr/FNR family transcriptional regulator  27.23 
 
 
224 aa  80.1  0.00000000000003  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0333343 
 
 
-
 
NC_008148  Rxyl_1234  Crp/FNR family transcriptional regulator  29.69 
 
 
232 aa  79.7  0.00000000000004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  25 
 
 
228 aa  79.7  0.00000000000004  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  24.23 
 
 
243 aa  79.3  0.00000000000005  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  26.53 
 
 
236 aa  79.3  0.00000000000005  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  25.23 
 
 
224 aa  79.3  0.00000000000006  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_1371  CRP/FNR family transcriptional regulator  27.23 
 
 
224 aa  79  0.00000000000007  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0955358 
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  27.81 
 
 
242 aa  78.6  0.00000000000009  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  23.38 
 
 
225 aa  78.2  0.0000000000001  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_1061  Crp family transcriptional regulator  25.6 
 
 
214 aa  77.4  0.0000000000002  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0336611  n/a   
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  23.04 
 
 
230 aa  77  0.0000000000002  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_008148  Rxyl_1332  Crp/FNR family transcriptional regulator  37.63 
 
 
238 aa  77.4  0.0000000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.407818  n/a   
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  24.08 
 
 
226 aa  77.4  0.0000000000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_013441  Gbro_0505  cyclic nucleotide-binding protein  26.76 
 
 
224 aa  77.8  0.0000000000002  Gordonia bronchialis DSM 43247  Bacteria  normal  0.287437  n/a   
 
 
-
 
NC_009972  Haur_2884  Crp/FNR family transcriptional regulator  28.57 
 
 
218 aa  77  0.0000000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.161359  n/a   
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  23.6 
 
 
236 aa  77  0.0000000000003  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  25.7 
 
 
228 aa  76.6  0.0000000000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  24.73 
 
 
231 aa  76.6  0.0000000000004  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  25.97 
 
 
226 aa  76.6  0.0000000000004  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0292  CRP/FNR family transcriptional regulator  27.83 
 
 
224 aa  76.3  0.0000000000004  Roseiflexus sp. RS-1  Bacteria  normal  0.210312  normal  0.0189188 
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  22.81 
 
 
352 aa  76.3  0.0000000000004  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_009921  Franean1_1101  Crp/FNR family transcriptional regulator  29.76 
 
 
246 aa  76.6  0.0000000000004  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  23.6 
 
 
236 aa  76.3  0.0000000000005  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_013159  Svir_36130  cAMP-binding protein  24.53 
 
 
224 aa  75.9  0.0000000000007  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.758224 
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  28.34 
 
 
234 aa  75.5  0.0000000000007  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_011894  Mnod_4596  transcriptional regulator, Crp/Fnr family  29.58 
 
 
230 aa  75.9  0.0000000000007  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1660  Crp/FNR family transcriptional regulator  24.87 
 
 
261 aa  75.5  0.0000000000007  Nocardioides sp. JS614  Bacteria  normal  0.74426  n/a   
 
 
-
 
NC_009380  Strop_4322  cyclic nucleotide-binding  26.29 
 
 
225 aa  75.5  0.0000000000008  Salinispora tropica CNB-440  Bacteria  normal  normal  0.0230513 
 
 
-
 
NC_008699  Noca_1641  cyclic nucleotide-binding  29.23 
 
 
267 aa  75.5  0.0000000000008  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_8981  putative transcriptional regulator, Crp/Fnr family  29.74 
 
 
222 aa  75.5  0.0000000000009  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_4762  Crp/FNR family transcriptional regulator  26.29 
 
 
225 aa  75.1  0.000000000001  Salinispora arenicola CNS-205  Bacteria  normal  0.900483  hitchhiker  0.0000929699 
 
 
-
 
NC_009485  BBta_6723  putative cyclic-AMP receptor-like protein  26.58 
 
 
235 aa  74.7  0.000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.823634  normal 
 
 
-
 
NC_013530  Xcel_1838  transcriptional regulator, Crp/Fnr family  27.88 
 
 
225 aa  74.7  0.000000000001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0983527  n/a   
 
 
-
 
NC_013216  Dtox_2750  transcriptional regulator, Crp/Fnr family  30.3 
 
 
222 aa  74.7  0.000000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.0000000354449  normal  0.602467 
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  27.12 
 
 
224 aa  74.7  0.000000000001  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_0303  transcriptional regulator, Crp/Fnr family  26.15 
 
 
228 aa  75.1  0.000000000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
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