95 homologs were found in PanDaTox collection
for query gene Mext_1239 on replicon NC_010172
Organism: Methylobacterium extorquens PA1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010172  Mext_1239  pyridoxamine 5'-phosphate oxidase-related FMN-binding  100 
 
 
271 aa  526  1e-148  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1401  pyridoxamine 5'-phosphate oxidase-related FMN-binding  98.89 
 
 
271 aa  519  1e-146  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.509564  normal  0.321093 
 
 
-
 
NC_010725  Mpop_1180  pyridoxamine 5'-phosphate oxidase-related FMN-binding  92.08 
 
 
270 aa  432  1e-120  Methylobacterium populi BJ001  Bacteria  normal  normal  0.171584 
 
 
-
 
NC_010505  Mrad2831_3090  pyridoxamine 5'-phosphate oxidase-related FMN-binding  81.38 
 
 
261 aa  348  4e-95  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.853398  normal 
 
 
-
 
NC_011894  Mnod_5432  pyridoxamine 5'-phosphate oxidase-related FMN-binding  73.11 
 
 
260 aa  319  2e-86  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.932188  n/a   
 
 
-
 
NC_010511  M446_0224  pyridoxamine 5'-phosphate oxidase-related FMN-binding  72.96 
 
 
260 aa  303  2e-81  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.011733 
 
 
-
 
NC_008254  Meso_2207  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  50.21 
 
 
251 aa  209  3e-53  Chelativorans sp. BNC1  Bacteria  normal  0.359427  n/a   
 
 
-
 
NC_011666  Msil_1374  pyridoxamine 5'-phosphate oxidase-related FMN-binding  50.85 
 
 
256 aa  198  6e-50  Methylocella silvestris BL2  Bacteria  n/a    normal  0.694327 
 
 
-
 
NC_010581  Bind_2742  pyridoxamine 5'-phosphate oxidase-related FMN-binding  45.99 
 
 
260 aa  197  1e-49  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.615645 
 
 
-
 
NC_009636  Smed_2308  pyridoxamine 5'-phosphate oxidase-related FMN-binding  49.17 
 
 
247 aa  197  2e-49  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.547637 
 
 
-
 
NC_009485  BBta_7366  hypothetical protein  45.81 
 
 
242 aa  193  3e-48  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.708194  normal 
 
 
-
 
NC_009720  Xaut_2844  pyridoxamine 5'-phosphate oxidase-related FMN-binding  45.61 
 
 
238 aa  191  1e-47  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.907911 
 
 
-
 
NC_011004  Rpal_0362  pyridoxamine 5'-phosphate oxidase-related FMN-binding  47.26 
 
 
244 aa  190  2e-47  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.34488  n/a   
 
 
-
 
NC_007925  RPC_0598  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  43.98 
 
 
247 aa  189  5e-47  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0366  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  44.58 
 
 
244 aa  186  5e-46  Rhodopseudomonas palustris BisB5  Bacteria  normal  hitchhiker  0.0042233 
 
 
-
 
NC_007778  RPB_0462  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  45.57 
 
 
244 aa  185  6e-46  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.45404 
 
 
-
 
NC_007406  Nwi_0349  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  44.4 
 
 
245 aa  185  7e-46  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.334445  normal  0.250597 
 
 
-
 
NC_007964  Nham_0444  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  43.57 
 
 
247 aa  184  1e-45  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_3095  pyridoxamine 5'-phosphate oxidase-related FMN-binding  48.66 
 
 
249 aa  184  1e-45  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_2826  pyridoxamine 5'-phosphate oxidase-related FMN-binding  47.77 
 
 
249 aa  178  8e-44  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.171612  normal  0.204589 
 
 
-
 
NC_009719  Plav_3592  pyridoxamine 5'-phosphate oxidase-related FMN-binding  43.51 
 
 
255 aa  177  2e-43  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_1581  pyridoxamine 5'-phosphate oxidase-related FMN-binding  43.32 
 
 
245 aa  156  4e-37  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0647071  n/a   
 
 
-
 
NC_011989  Avi_3284  hypothetical protein  41.59 
 
 
243 aa  135  6e-31  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A3420  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  38.1 
 
 
270 aa  133  4e-30  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.331043  n/a   
 
 
-
 
NC_009439  Pmen_3685  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  35.44 
 
 
244 aa  117  2e-25  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_57040  hypothetical protein  35.24 
 
 
244 aa  115  7e-25  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4366  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  35.04 
 
 
243 aa  112  7e-24  Pseudomonas putida F1  Bacteria  normal  0.809108  normal  0.082398 
 
 
-
 
NC_009656  PSPA7_4959  hypothetical protein  35.06 
 
 
244 aa  112  8e-24  Pseudomonas aeruginosa PA7  Bacteria  normal  0.112474  n/a   
 
 
-
 
NC_010501  PputW619_0965  pyridoxamine 5'-phosphate oxidase-related FMN-binding  33.61 
 
 
243 aa  111  1e-23  Pseudomonas putida W619  Bacteria  normal  0.499992  normal  0.821374 
 
 
-
 
NC_012560  Avin_13440  pyridoxamine 5-phosphate oxidase  35.81 
 
 
245 aa  110  3e-23  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA0309  hypothetical protein  33.05 
 
 
238 aa  109  4e-23  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_4491  pyridoxamine 5'-phosphate oxidase-related FMN-binding  33.76 
 
 
276 aa  107  2e-22  Pseudomonas putida GB-1  Bacteria  normal  0.0201918  normal 
 
 
-
 
NC_009952  Dshi_2212  hypothetical protein  42.5 
 
 
164 aa  107  2e-22  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_1358  hypothetical protein  33.76 
 
 
289 aa  106  4e-22  Pseudomonas putida KT2440  Bacteria  hitchhiker  0.0010611  normal  0.192229 
 
 
-
 
NC_009428  Rsph17025_0512  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  42.5 
 
 
165 aa  105  8e-22  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.0680495 
 
 
-
 
NC_007492  Pfl01_4504  pyridoxamine 5'-phosphate oxidase-like, FMN-binding  33.62 
 
 
243 aa  103  2e-21  Pseudomonas fluorescens Pf0-1  Bacteria  normal  decreased coverage  0.000287779 
 
 
-
 
NC_007493  RSP_0581  hypothetical protein  47.3 
 
 
164 aa  103  3e-21  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2234  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  46.62 
 
 
164 aa  103  4e-21  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.957515 
 
 
-
 
NC_008686  Pden_1323  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  44.44 
 
 
161 aa  102  5e-21  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_1574  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  44.44 
 
 
161 aa  102  5e-21  Paracoccus denitrificans PD1222  Bacteria  normal  0.588617  normal  0.0203021 
 
 
-
 
NC_007802  Jann_3613  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  44.44 
 
 
184 aa  101  1e-20  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_1491  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  29.69 
 
 
244 aa  99.8  5e-20  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_2264  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  43.24 
 
 
171 aa  97.8  2e-19  Ruegeria sp. TM1040  Bacteria  normal  0.159731  normal 
 
 
-
 
NC_009338  Mflv_1085  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  34.43 
 
 
276 aa  97.1  3e-19  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.429706  normal  0.50341 
 
 
-
 
NC_008726  Mvan_5737  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  34.47 
 
 
270 aa  92.4  8e-18  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.602445 
 
 
-
 
NC_008542  Bcen2424_0280  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  33.04 
 
 
219 aa  89.4  6e-17  Burkholderia cenocepacia HI2424  Bacteria  normal  0.450879  n/a   
 
 
-
 
NC_008060  Bcen_2826  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  33.04 
 
 
219 aa  89.4  6e-17  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0262  pyridoxamine 5'-phosphate oxidase-related FMN-binding  33.04 
 
 
219 aa  89  8e-17  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.854509 
 
 
-
 
NC_013739  Cwoe_3456  pyridoxamine 5'-phosphate oxidase-related FMN- binding protein  33.21 
 
 
268 aa  86.3  5e-16  Conexibacter woesei DSM 14684  Bacteria  normal  0.0456393  normal  0.068579 
 
 
-
 
NC_011891  A2cp1_0907  pyridoxamine 5'-phosphate oxidase-related FMN-binding  40 
 
 
169 aa  86.3  5e-16  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  unclonable  6.20808e-10  n/a   
 
 
-
 
NC_011138  MADE_01539  uncharacterized metal-binding protein  26.41 
 
 
243 aa  85.9  6e-16  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.504021  n/a   
 
 
-
 
NC_007510  Bcep18194_A3383  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  33.33 
 
 
219 aa  84.7  1e-15  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_0857  pyridoxamine 5'-phosphate oxidase-related FMN- binding protein  34.93 
 
 
267 aa  84  2e-15  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.579175  n/a   
 
 
-
 
NC_008390  Bamb_0194  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  33.63 
 
 
248 aa  84  2e-15  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0903  pyridoxamine 5'-phosphate oxidase-related FMN-binding  41.5 
 
 
167 aa  82  1e-14  Anaeromyxobacter sp. K  Bacteria  decreased coverage  0.00546716  n/a   
 
 
-
 
NC_010551  BamMC406_0208  pyridoxamine 5'-phosphate oxidase-related FMN-binding  33.19 
 
 
219 aa  80.9  2e-14  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.996634 
 
 
-
 
NC_010524  Lcho_1064  pyridoxamine 5'-phosphate oxidase-related FMN-binding  38.1 
 
 
171 aa  80.5  3e-14  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010622  Bphy_0115  pyridoxamine 5'-phosphate oxidase-related FMN-binding  30.88 
 
 
221 aa  80.5  3e-14  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_0188  pyridoxamine 5'-phosphate oxidase-related FMN-binding  33.33 
 
 
254 aa  80.5  3e-14  Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  5.40256e-05 
 
 
-
 
NC_008705  Mkms_5211  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  35.45 
 
 
266 aa  80.1  4e-14  Mycobacterium sp. KMS  Bacteria  normal  0.733021  normal 
 
 
-
 
NC_008146  Mmcs_5122  pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein  35.45 
 
 
266 aa  80.1  4e-14  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_5502  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  35.45 
 
 
266 aa  79.3  6e-14  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_0397  pyridoxamine 5'-phosphate oxidase-related FMN-binding  30.73 
 
 
220 aa  79  8e-14  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I3156  pyridoxamine 5'-phosphate oxidase family protein  31.22 
 
 
240 aa  78.6  1e-13  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A4323  hypothetical protein  32.72 
 
 
217 aa  78.2  1e-13  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_0688  hypothetical protein  35.76 
 
 
194 aa  77.8  2e-13  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.365581 
 
 
-
 
NC_011677  PHATRDRAFT_4413  predicted protein  28.07 
 
 
259 aa  77.4  2e-13  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  0.748295  n/a   
 
 
-
 
NC_007434  BURPS1710b_0049  pyridoxamine 5'-phosphate oxidase family protein  34.38 
 
 
288 aa  76.6  4e-13  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2903  hypothetical protein  34.38 
 
 
226 aa  76.6  4e-13  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3405  pyridoxamine 5'-phosphate oxidase family protein  34.38 
 
 
226 aa  76.6  4e-13  Burkholderia mallei SAVP1  Bacteria  normal  0.0603808  n/a   
 
 
-
 
NC_009074  BURPS668_3829  pyridoxamine 5'-phosphate oxidase family protein  34.38 
 
 
226 aa  76.6  4e-13  Burkholderia pseudomallei 668  Bacteria  normal  0.841691  n/a   
 
 
-
 
NC_008836  BMA10229_A1637  pyridoxamine 5'-phosphate oxidase family protein  34.38 
 
 
291 aa  76.6  4e-13  Burkholderia mallei NCTC 10229  Bacteria  normal  0.600964  n/a   
 
 
-
 
NC_009076  BURPS1106A_3910  pyridoxamine 5'-phosphate oxidase family protein  34.38 
 
 
226 aa  76.6  4e-13  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2964  pyridoxamine 5'-phosphate oxidase family protein  34.38 
 
 
226 aa  76.6  4e-13  Burkholderia mallei NCTC 10247  Bacteria  normal  0.920476  n/a   
 
 
-
 
NC_009767  Rcas_3461  pyridoxamine 5'-phosphate oxidase-related FMN-binding  38.1 
 
 
170 aa  75.9  6e-13  Roseiflexus castenholzii DSM 13941  Bacteria  normal  hitchhiker  0.00895829 
 
 
-
 
NC_009523  RoseRS_2721  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  38.06 
 
 
171 aa  75.1  1e-12  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_0916  pyridoxamine 5'-phosphate oxidase-related FMN-binding  39.84 
 
 
172 aa  72  1e-11  Anaeromyxobacter sp. Fw109-5  Bacteria  hitchhiker  0.00374077  normal 
 
 
-
 
NC_011831  Cagg_1695  pyridoxamine 5'-phosphate oxidase-related FMN-binding  35.37 
 
 
167 aa  66.2  5e-10  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_0858  FMN-binding pyridoxamine 5'-phosphate oxidase-related protein protein  37.9 
 
 
171 aa  65.9  7e-10  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  hitchhiker  0.00651728  n/a   
 
 
-
 
NC_007974  Rmet_5353  hypothetical protein  35.38 
 
 
217 aa  63.5  4e-09  Cupriavidus metallidurans CH34  Bacteria  normal  0.513248  normal 
 
 
-
 
NC_007908  Rfer_1441  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  31.76 
 
 
162 aa  59.7  6e-08  Rhodoferax ferrireducens T118  Bacteria  decreased coverage  0.00418233  n/a   
 
 
-
 
NC_011687  PHATRDRAFT_54952  predicted protein  26.86 
 
 
415 aa  58.9  8e-08  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  0.417126  n/a   
 
 
-
 
NC_008781  Pnap_2042  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  32.64 
 
 
199 aa  57.4  2e-07  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0340627  normal 
 
 
-
 
NC_009365  OSTLU_13022  predicted protein  28.45 
 
 
276 aa  57.4  2e-07  Ostreococcus lucimarinus CCE9901  Eukaryota  normal  0.197262  normal  0.0448827 
 
 
-
 
NC_011992  Dtpsy_1547  pyridoxamine 5'-phosphate oxidase-related FMN-binding  31.69 
 
 
166 aa  53.5  3e-06  Acidovorax ebreus TPSY  Bacteria  normal  0.610229  n/a   
 
 
-
 
NC_008782  Ajs_2312  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  31.69 
 
 
166 aa  53.5  4e-06  Acidovorax sp. JS42  Bacteria  normal  normal  0.885603 
 
 
-
 
NC_009371  OSTLU_41998  predicted protein  29.57 
 
 
314 aa  51.2  2e-05  Ostreococcus lucimarinus CCE9901  Eukaryota  normal  normal 
 
 
-
 
NC_013422  Hneap_0671  pyridoxamine 5'-phosphate oxidase-related FMN-binding protein  31.94 
 
 
167 aa  50.4  3e-05  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_4069  hypothetical protein  31.65 
 
 
92 aa  46.6  0.0004  Cyanothece sp. PCC 8802  Bacteria  normal  0.114085  normal 
 
 
-
 
NC_011726  PCC8801_4031  hypothetical protein  32.05 
 
 
92 aa  47  0.0004  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008599  CFF8240_1758  pyridoxamine 5'-phosphate oxidase family protein  31.75 
 
 
248 aa  45.4  0.0009  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3233  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  31.14 
 
 
185 aa  45.1  0.001  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0067733  normal  0.916764 
 
 
-
 
NC_007413  Ava_3307  hypothetical protein  33.33 
 
 
94 aa  44.7  0.002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.309408  normal  0.996531 
 
 
-
 
NC_011312  VSAL_I1748  heme uptake and utilization protein HuvZ  28.17 
 
 
176 aa  42.4  0.008  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_3667  hypothetical protein  31.16 
 
 
185 aa  42.4  0.008  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
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